RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 EXOC5O00471 708 aa8.36□□□□□ -1.07
NUP54-215ENST00000514313 TBX18O95935 607 aa8.36□□□□□ -1.07
NUP54-215ENST00000514313 CAPN3P20807 821 aa8.36□□□□□ -1.07
NUP54-215ENST00000514313 HNRNPMP52272 730 aaKnown RBP eCLIP8.36□□□□□ -1.07
NUP54-215ENST00000514313 VAMP2P63027 116 aa8.36□□□□□ -1.07
NUP54-215ENST00000514313 MTAPQ13126 283 aa8.36□□□□□ -1.07
NUP54-215ENST00000514313 RESTQ13127 1097 aa8.36□□□□□ -1.07
NUP54-215ENST00000514313 EIF2B5Q13144 721 aaKnown RBP8.36□□□□□ -1.07
NUP54-215ENST00000514313 PDCLQ13371 301 aa8.36□□□□□ -1.07
NUP54-215ENST00000514313 TOB2Q14106 344 aaPredicted RBP8.36□□□□□ -1.07
NUP54-215ENST00000514313 ICAM4Q14773 271 aa8.36□□□□□ -1.07
NUP54-215ENST00000514313 BEAN1Q3B7T3 259 aa8.36□□□□□ -1.07
NUP54-215ENST00000514313 BBS12Q6ZW61 710 aa8.36□□□□□ -1.07
NUP54-215ENST00000514313 SIAH1Q8IUQ4 282 aa8.36□□□□□ -1.07
NUP54-215ENST00000514313 SUPT20HQ8NEM7 779 aa8.36□□□□□ -1.07
NUP54-215ENST00000514313 SLC22A17Q8WUG5 538 aa8.36□□□□□ -1.07
NUP54-215ENST00000514313 GLG1Q92896 1179 aa8.36□□□□□ -1.07
NUP54-215ENST00000514313 RRP36Q96EU6 259 aaKnown RBP8.36□□□□□ -1.07
NUP54-215ENST00000514313 STEAP1Q9UHE8 339 aa8.36□□□□□ -1.07
NUP54-215ENST00000514313 NFU1Q9UMS0 254 aa8.36□□□□□ -1.07
NUP54-215ENST00000514313 DERAQ9Y315 318 aa8.36□□□□□ -1.07
NUP54-215ENST00000514313 RRP7AQ9Y3A4 280 aaKnown RBP8.36□□□□□ -1.07
NUP54-215ENST00000514313 GAGE12BA1L429 117 aa8.35□□□□□ -1.07
NUP54-215ENST00000514313 GAGE12HA6NDE8 117 aa8.35□□□□□ -1.07
NUP54-215ENST00000514313 B4E171 279 aa8.35□□□□□ -1.07
NUP54-215ENST00000514313 FAM20BO75063 409 aa8.35□□□□□ -1.07
NUP54-215ENST00000514313 LDHCP07864 332 aa8.35□□□□□ -1.07
NUP54-215ENST00000514313 CYP21A2P08686 494 aa8.35□□□□□ -1.07
NUP54-215ENST00000514313 CNPP09543 421 aaKnown RBP8.35□□□□□ -1.07
NUP54-215ENST00000514313 IFIT1P09914 478 aaKnown RBP8.35□□□□□ -1.07
NUP54-215ENST00000514313 DRD1P21728 446 aa8.35□□□□□ -1.07
NUP54-215ENST00000514313 TSPAN7P41732 249 aa8.35□□□□□ -1.07
NUP54-215ENST00000514313 DGAT2L7PQ6IED9 249 aa8.35□□□□□ -1.07
NUP54-215ENST00000514313 CPEB3Q8NE35 698 aaKnown RBP8.35□□□□□ -1.07
NUP54-215ENST00000514313 EDAQ92838 391 aa8.35□□□□□ -1.07
NUP54-215ENST00000514313 FMNL2Q96PY5 1086 aa8.35□□□□□ -1.07
NUP54-215ENST00000514313 ADOQ96SZ5 270 aa8.35□□□□□ -1.07
NUP54-215ENST00000514313 ADAM2Q99965 735 aa8.35□□□□□ -1.07
NUP54-215ENST00000514313 GPR63Q9BZJ6 419 aa8.35□□□□□ -1.07
NUP54-215ENST00000514313 GXYLT2A0PJZ3 443 aa8.34□□□□□ -1.07
NUP54-215ENST00000514313 SLC38A8A6NNN8 435 aa8.34□□□□□ -1.07
NUP54-215ENST00000514313 STX16-NPEPL1H3BU86 382 aa8.34□□□□□ -1.07
NUP54-215ENST00000514313 STX16O14662 325 aa8.34□□□□□ -1.07
NUP54-215ENST00000514313 CDKL5O76039 1030 aa8.34□□□□□ -1.07
NUP54-215ENST00000514313 TFRCP02786 760 aaKnown RBP8.34□□□□□ -1.07
NUP54-215ENST00000514313 CDK7P50613 346 aa8.34□□□□□ -1.07
NUP54-215ENST00000514313 RBM5P52756 815 aaKnown RBP eCLIP8.34□□□□□ -1.07
NUP54-215ENST00000514313 HS1BP3Q53T59 392 aa8.34□□□□□ -1.07
NUP54-215ENST00000514313 MAVSQ7Z434 540 aa8.34□□□□□ -1.07
NUP54-215ENST00000514313 B3GALNT2Q8NCR0 500 aa8.34□□□□□ -1.07
NUP54-215ENST00000514313 HVCN1Q96D96 273 aa8.34□□□□□ -1.07
NUP54-215ENST00000514313 PAAF1Q9BRP4 392 aa8.34□□□□□ -1.07
NUP54-215ENST00000514313 ABHD16BQ9H3Z7 469 aa8.34□□□□□ -1.07
NUP54-215ENST00000514313 NOD2Q9HC29 1040 aa8.34□□□□□ -1.07
NUP54-215ENST00000514313 GLOD4Q9HC38 313 aa8.34□□□□□ -1.07
NUP54-215ENST00000514313 ALG13Q9NP73 1137 aaKnown RBP8.34□□□□□ -1.07
NUP54-215ENST00000514313 PI4KBQ9UBF8 816 aa8.34□□□□□ -1.07
NUP54-215ENST00000514313 DNAJC16Q9Y2G8 782 aa8.34□□□□□ -1.07
NUP54-215ENST00000514313 PCDHB7Q9Y5E2 793 aa8.34□□□□□ -1.07
NUP54-215ENST00000514313 CTIFO43310 598 aaKnown RBP8.33□□□□□ -1.08
NUP54-215ENST00000514313 NDUFA10O95299 355 aa8.33□□□□□ -1.08
NUP54-215ENST00000514313 LARGE1O95461 756 aa8.33□□□□□ -1.08
NUP54-215ENST00000514313 RHOP08100 348 aa8.33□□□□□ -1.08
NUP54-215ENST00000514313 HNRNPA1P09651 372 aaKnown RBP eCLIP8.33□□□□□ -1.08
NUP54-215ENST00000514313 ACRV1P26436 265 aa8.33□□□□□ -1.08
NUP54-215ENST00000514313 ZFP36P26651 326 aaKnown RBP8.33□□□□□ -1.08
NUP54-215ENST00000514313 GSTM5P46439 218 aa8.33□□□□□ -1.08
NUP54-215ENST00000514313 MCM2P49736 904 aa8.33□□□□□ -1.08
NUP54-215ENST00000514313 CLCN2P51788 898 aa8.33□□□□□ -1.08
NUP54-215ENST00000514313 EIF4A1P60842 406 aaKnown RBP8.33□□□□□ -1.08
NUP54-215ENST00000514313 CAND1Q86VP6 1230 aaKnown RBP8.33□□□□□ -1.08
NUP54-215ENST00000514313 LRRC71Q8N4P6 559 aa8.33□□□□□ -1.08
NUP54-215ENST00000514313 SOCS4Q8WXH5 440 aa8.33□□□□□ -1.08
NUP54-215ENST00000514313 LPIN2Q92539 896 aa8.33□□□□□ -1.08
NUP54-215ENST00000514313 HDAC2Q92769 488 aaKnown RBP8.33□□□□□ -1.08
NUP54-215ENST00000514313 WDYHV1Q96HA8 205 aa8.33□□□□□ -1.08
NUP54-215ENST00000514313 REEP2Q9BRK0 252 aa8.33□□□□□ -1.08
NUP54-215ENST00000514313 AGXT2Q9BYV1 514 aa8.33□□□□□ -1.08
NUP54-215ENST00000514313 OSBPL5Q9H0X9 879 aaPredicted RBP8.33□□□□□ -1.08
NUP54-215ENST00000514313 CCDC134Q9H6E4 229 aa8.33□□□□□ -1.08
NUP54-215ENST00000514313 JMJD4Q9H9V9 463 aa8.33□□□□□ -1.08
NUP54-215ENST00000514313 CD248Q9HCU0 757 aa8.33□□□□□ -1.08
NUP54-215ENST00000514313 LOC105369274A0A096LPK9 316 aa8.32□□□□□ -1.08
NUP54-215ENST00000514313 LOC102723532A0A0G2JNH3 316 aa8.32□□□□□ -1.08
NUP54-215ENST00000514313 M0QYT0 321 aa8.32□□□□□ -1.08
NUP54-215ENST00000514313 TMEM225BP0DP42 221 aa8.32□□□□□ -1.08
NUP54-215ENST00000514313 DDX6P26196 483 aaKnown RBP eCLIP8.32□□□□□ -1.08
NUP54-215ENST00000514313 EIF5P55010 431 aaKnown RBP8.32□□□□□ -1.08
NUP54-215ENST00000514313 FAM3BP58499 235 aaPredicted RBP8.32□□□□□ -1.08
NUP54-215ENST00000514313 ANKRD1Q15327 319 aa8.32□□□□□ -1.08
NUP54-215ENST00000514313 AASDHQ4L235 1098 aaPredicted RBP8.32□□□□□ -1.08
NUP54-215ENST00000514313 FAM90A2PQ658T7 463 aa8.32□□□□□ -1.08
NUP54-215ENST00000514313 ATG16L1Q676U5 607 aa8.32□□□□□ -1.08
NUP54-215ENST00000514313 CCDC144NLQ6NUI1 221 aa8.32□□□□□ -1.08
NUP54-215ENST00000514313 SYNE3Q6ZMZ3 975 aa8.32□□□□□ -1.08
NUP54-215ENST00000514313 DTX2Q86UW9 622 aa8.32□□□□□ -1.08
NUP54-215ENST00000514313 TMPRSS6Q8IU80 811 aa8.32□□□□□ -1.08
NUP54-215ENST00000514313 OR4N4Q8N0Y3 316 aa8.32□□□□□ -1.08
NUP54-215ENST00000514313 MYCBPAPQ8TBZ2 947 aa8.32□□□□□ -1.08
NUP54-215ENST00000514313 SSH3Q8TE77 659 aa8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms