RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 RAPGEF5Q92565 580 aa19.44■□□□□ 0.7
CLN3-206ENST00000360019 EDEM1Q92611 657 aa19.44■□□□□ 0.7
CLN3-206ENST00000360019 RNF25Q96BH1 459 aaPredicted RBP19.44■□□□□ 0.7
CLN3-206ENST00000360019 SPATA17Q96L03 361 aa19.44■□□□□ 0.7
CLN3-206ENST00000360019 HERPUD2Q9BSE4 406 aa19.44■□□□□ 0.7
CLN3-206ENST00000360019 IL37Q9NZH6 218 aa19.44■□□□□ 0.7
CLN3-206ENST00000360019 NR2E1Q9Y466 385 aa19.44■□□□□ 0.7
CLN3-206ENST00000360019 NR2E3Q9Y5X4 410 aa19.44■□□□□ 0.7
CLN3-206ENST00000360019 TCRBV7S2A1N4TA0A589 114 aa19.43■□□□□ 0.7
CLN3-206ENST00000360019 CAPN9O14815 690 aa19.43■□□□□ 0.7
CLN3-206ENST00000360019 PRPSAP2O60256 369 aa19.43■□□□□ 0.7
CLN3-206ENST00000360019 RARAP10276 462 aa19.43■□□□□ 0.7
CLN3-206ENST00000360019 NCAM1P13591 858 aa19.43■□□□□ 0.7
CLN3-206ENST00000360019 ATF2P15336 505 aa19.43■□□□□ 0.7
CLN3-206ENST00000360019 DESP17661 470 aa19.43■□□□□ 0.7
CLN3-206ENST00000360019 TPGS2Q68CL5 300 aa19.43■□□□□ 0.7
CLN3-206ENST00000360019 SCYL2Q6P3W7 929 aa19.43■□□□□ 0.7
CLN3-206ENST00000360019 ADAT2Q7Z6V5 191 aaKnown RBP19.43■□□□□ 0.7
CLN3-206ENST00000360019 SCD5Q86SK9 330 aa19.43■□□□□ 0.7
CLN3-206ENST00000360019 SLC13A5Q86YT5 568 aaPredicted RBP19.43■□□□□ 0.7
CLN3-206ENST00000360019 CCDC50Q8IVM0 306 aa19.43■□□□□ 0.7
CLN3-206ENST00000360019 SLITRK1Q96PX8 696 aa19.43■□□□□ 0.7
CLN3-206ENST00000360019 C17orf80Q9BSJ5 609 aa19.43■□□□□ 0.7
CLN3-206ENST00000360019 PLVAPQ9BX97 442 aa19.43■□□□□ 0.7
CLN3-206ENST00000360019 RXFP1Q9HBX9 757 aa19.43■□□□□ 0.7
CLN3-206ENST00000360019 DDX56Q9NY93 547 aaKnown RBP19.43■□□□□ 0.7
CLN3-206ENST00000360019 FNIP2Q9P278 1114 aa19.43■□□□□ 0.7
CLN3-206ENST00000360019 STAP1Q9ULZ2 295 aa19.43■□□□□ 0.7
CLN3-206ENST00000360019 SCML2Q9UQR0 700 aa19.43■□□□□ 0.7
CLN3-206ENST00000360019 FAM92AA1XBS5 289 aa19.42■□□□□ 0.7
CLN3-206ENST00000360019 TEX28O15482 410 aa19.42■□□□□ 0.7
CLN3-206ENST00000360019 ENDOD1O94919 500 aa19.42■□□□□ 0.7
CLN3-206ENST00000360019 YWHAGP61981 247 aaKnown RBP eCLIP19.42■□□□□ 0.7
CLN3-206ENST00000360019 MTMR3Q13615 1198 aa19.42■□□□□ 0.7
CLN3-206ENST00000360019 ZFYVE27Q5T4F4 411 aa19.42■□□□□ 0.7
CLN3-206ENST00000360019 RCOR2Q8IZ40 523 aa19.42■□□□□ 0.7
CLN3-206ENST00000360019 UBXN4Q92575 508 aa19.42■□□□□ 0.7
CLN3-206ENST00000360019 RBM41Q96IZ5 413 aaKnown RBP19.42■□□□□ 0.7
CLN3-206ENST00000360019 NCAPGQ9BPX3 1015 aa19.42■□□□□ 0.7
CLN3-206ENST00000360019 FBXO44Q9H4M3 255 aa19.42■□□□□ 0.7
CLN3-206ENST00000360019 NMUR1Q9HB89 426 aa19.42■□□□□ 0.7
CLN3-206ENST00000360019 ALG13Q9NP73 1137 aaKnown RBP19.42■□□□□ 0.7
CLN3-206ENST00000360019 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP19.42■□□□□ 0.7
CLN3-206ENST00000360019 PLXNA3P51805 1871 aa19.42■□□□□ 0.7
CLN3-206ENST00000360019 MYO16Q9Y6X6 1858 aa19.42■□□□□ 0.7
CLN3-206ENST00000360019 LRRD1A4D1F6 860 aa19.41■□□□□ 0.7
CLN3-206ENST00000360019 C3orf70A6NLC5 250 aaPredicted RBP19.41■□□□□ 0.7
CLN3-206ENST00000360019 M0QYT0 321 aa19.41■□□□□ 0.7
CLN3-206ENST00000360019 KRIT1O00522 736 aa19.41■□□□□ 0.7
CLN3-206ENST00000360019 RPL10AP62906 217 aaKnown RBP19.41■□□□□ 0.7
CLN3-206ENST00000360019 SMC1AQ14683 1233 aaKnown RBP19.41■□□□□ 0.7
CLN3-206ENST00000360019 MFSD7Q6UXD7 560 aa19.41■□□□□ 0.7
CLN3-206ENST00000360019 BEND5Q7L4P6 421 aa19.41■□□□□ 0.7
CLN3-206ENST00000360019 CMASQ8NFW8 434 aaPredicted RBP19.41■□□□□ 0.7
CLN3-206ENST00000360019 ADAM32Q8TC27 787 aa19.41■□□□□ 0.7
CLN3-206ENST00000360019 HSPH1Q92598 858 aa19.41■□□□□ 0.7
CLN3-206ENST00000360019 NAP1L3Q99457 506 aaPredicted RBP19.41■□□□□ 0.7
CLN3-206ENST00000360019 CD48P09326 243 aa19.41■□□□□ 0.7
CLN3-206ENST00000360019 CNPP09543 421 aaKnown RBP19.41■□□□□ 0.7
CLN3-206ENST00000360019 RALAP11233 206 aa19.41■□□□□ 0.7
CLN3-206ENST00000360019 TUFMP49411 452 aaKnown RBP19.41■□□□□ 0.7
CLN3-206ENST00000360019 MMGT1Q8N4V1 131 aa19.41■□□□□ 0.7
CLN3-206ENST00000360019 SLC7A14Q8TBB6 771 aa19.41■□□□□ 0.7
CLN3-206ENST00000360019 GIPC2Q8TF65 315 aa19.41■□□□□ 0.7
CLN3-206ENST00000360019 OSBPL8Q9BZF1 889 aa19.41■□□□□ 0.7
CLN3-206ENST00000360019 EPC1Q9H2F5 836 aa19.41■□□□□ 0.7
CLN3-206ENST00000360019 OSER1Q9NX31 292 aa19.41■□□□□ 0.7
CLN3-206ENST00000360019 HSFX1Q9UBD0 423 aa19.41■□□□□ 0.7
CLN3-206ENST00000360019 GREB1Q4ZG55 1949 aa19.41■□□□□ 0.7
CLN3-206ENST00000360019 A0A1W2PQH9 124 aa19.4■□□□□ 0.7
CLN3-206ENST00000360019 FSCN2O14926 492 aa19.4■□□□□ 0.7
CLN3-206ENST00000360019 RTN3O95197 1032 aaPredicted RBP19.4■□□□□ 0.7
CLN3-206ENST00000360019 DNAJB1P25685 340 aa19.4■□□□□ 0.7
CLN3-206ENST00000360019 YWHAQP27348 245 aa19.4■□□□□ 0.7
CLN3-206ENST00000360019 RDXP35241 583 aaKnown RBP19.4■□□□□ 0.7
CLN3-206ENST00000360019 ERVFC1P60507 584 aa19.4■□□□□ 0.7
CLN3-206ENST00000360019 SIX1Q15475 284 aaPredicted RBP19.4■□□□□ 0.7
CLN3-206ENST00000360019 ELF2Q15723 593 aa19.4■□□□□ 0.7
CLN3-206ENST00000360019 CLUL1Q15846 466 aa19.4■□□□□ 0.7
CLN3-206ENST00000360019 SPOCD1Q6ZMY3 1216 aa19.4■□□□□ 0.7
CLN3-206ENST00000360019 TMC7Q7Z402 723 aa19.4■□□□□ 0.7
CLN3-206ENST00000360019 FAM131BQ86XD5 332 aa19.4■□□□□ 0.7
CLN3-206ENST00000360019 SNRNP25Q9BV90 132 aaKnown RBP19.4■□□□□ 0.7
CLN3-206ENST00000360019 HEMGNQ9BXL5 484 aa19.4■□□□□ 0.7
CLN3-206ENST00000360019 CYP4F11Q9HBI6 524 aa19.4■□□□□ 0.7
CLN3-206ENST00000360019 ABCC13Q9NSE7 274 aa19.4■□□□□ 0.7
CLN3-206ENST00000360019 PIGVQ9NUD9 493 aa19.4■□□□□ 0.7
CLN3-206ENST00000360019 GPATCH2LQ9NWQ4 482 aa19.4■□□□□ 0.7
CLN3-206ENST00000360019 GMIPQ9P107 970 aa19.4■□□□□ 0.7
CLN3-206ENST00000360019 LZTS1Q9Y250 596 aa19.4■□□□□ 0.7
CLN3-206ENST00000360019 SSX2IPQ9Y2D8 614 aa19.4■□□□□ 0.7
CLN3-206ENST00000360019 RWDD3Q9Y3V2 267 aa19.4■□□□□ 0.7
CLN3-206ENST00000360019 SYNJ2BP-COX16A0A087WUM0 186 aa19.39■□□□□ 0.7
CLN3-206ENST00000360019 SLC38A8A6NNN8 435 aa19.39■□□□□ 0.7
CLN3-206ENST00000360019 C5orf67F2Z3F1 127 aa19.39■□□□□ 0.7
CLN3-206ENST00000360019 CA3P07451 260 aa19.39■□□□□ 0.7
CLN3-206ENST00000360019 KDELR1P24390 212 aa19.39■□□□□ 0.7
CLN3-206ENST00000360019 CA8P35219 290 aa19.39■□□□□ 0.7
CLN3-206ENST00000360019 CDKN2BP42772 138 aa19.39■□□□□ 0.7
CLN3-206ENST00000360019 ARSEP51690 589 aa19.39■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 1141.2 ms