RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 SKA1Q96BD8 255 aa14.33□□□□□ -0.12
CCDC88A-201ENST00000263630 SEPT5Q99719 369 aaPredicted RBP14.33□□□□□ -0.12
CCDC88A-201ENST00000263630 KBTBD13C9JR72 458 aa14.33□□□□□ -0.12
CCDC88A-201ENST00000263630 ZCCHC18P0CG32 403 aa14.33□□□□□ -0.12
CCDC88A-201ENST00000263630 DCP1BQ8IZD4 617 aaKnown RBP14.33□□□□□ -0.12
CCDC88A-201ENST00000263630 NT5C1AQ9BXI3 368 aa14.33□□□□□ -0.12
CCDC88A-201ENST00000263630 NCKIPSDQ9NZQ3 722 aa14.33□□□□□ -0.12
CCDC88A-201ENST00000263630 VPS4BO75351 444 aa14.33□□□□□ -0.12
CCDC88A-201ENST00000263630 KRT33AO76009 404 aa14.33□□□□□ -0.12
CCDC88A-201ENST00000263630 TTKP33981 857 aa14.33□□□□□ -0.12
CCDC88A-201ENST00000263630 SWSAP1Q6NVH7 229 aa14.33□□□□□ -0.12
CCDC88A-201ENST00000263630 GUF1Q8N442 669 aaKnown RBP14.33□□□□□ -0.12
CCDC88A-201ENST00000263630 WBP11Q9Y2W2 641 aaKnown RBP14.33□□□□□ -0.12
CCDC88A-201ENST00000263630 RPS6KA3P51812 740 aa14.33□□□□□ -0.12
CCDC88A-201ENST00000263630 SLC18A3Q16572 532 aa14.33□□□□□ -0.12
CCDC88A-201ENST00000263630 PEX5LQ8IYB4 626 aa14.33□□□□□ -0.12
CCDC88A-201ENST00000263630 GANQ9H2C0 597 aa14.33□□□□□ -0.12
CCDC88A-201ENST00000263630 MCUBQ9NWR8 336 aa14.33□□□□□ -0.12
CCDC88A-201ENST00000263630 POTECB2RU33 542 aa14.33□□□□□ -0.12
CCDC88A-201ENST00000263630 LRG1P02750 347 aa14.33□□□□□ -0.12
CCDC88A-201ENST00000263630 NCAM1P13591 858 aa14.33□□□□□ -0.12
CCDC88A-201ENST00000263630 TOP3AQ13472 1001 aaPredicted RBP14.33□□□□□ -0.12
CCDC88A-201ENST00000263630 SLC29A2Q14542 456 aa14.33□□□□□ -0.12
CCDC88A-201ENST00000263630 DCAF6Q58WW2 860 aa14.33□□□□□ -0.12
CCDC88A-201ENST00000263630 MROH9Q5TGP6 573 aa14.33□□□□□ -0.12
CCDC88A-201ENST00000263630 USPL1Q5W0Q7 1092 aa14.33□□□□□ -0.12
CCDC88A-201ENST00000263630 TSHZ1Q6ZSZ6 1077 aa14.33□□□□□ -0.12
CCDC88A-201ENST00000263630 R3HCC1LQ7Z5L2 792 aaKnown RBP14.33□□□□□ -0.12
CCDC88A-201ENST00000263630 NECAB2Q7Z6G3 386 aa14.33□□□□□ -0.12
CCDC88A-201ENST00000263630 PSMA8Q8TAA3 256 aa14.33□□□□□ -0.12
CCDC88A-201ENST00000263630 NEUROD4Q9HD90 331 aa14.33□□□□□ -0.12
CCDC88A-201ENST00000263630 JPH1Q9HDC5 661 aaPredicted RBP14.33□□□□□ -0.12
CCDC88A-201ENST00000263630 EHD3Q9NZN3 535 aa14.33□□□□□ -0.12
CCDC88A-201ENST00000263630 PCDHB7Q9Y5E2 793 aa14.33□□□□□ -0.12
CCDC88A-201ENST00000263630 H7C1W4 665 aa14.33□□□□□ -0.12
CCDC88A-201ENST00000263630 SNRNP48Q6IEG0 339 aaKnown RBP14.33□□□□□ -0.12
CCDC88A-201ENST00000263630 EIF3MQ7L2H7 374 aaKnown RBP14.33□□□□□ -0.12
CCDC88A-201ENST00000263630 GAL3ST3Q96A11 431 aa14.33□□□□□ -0.12
CCDC88A-201ENST00000263630 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP14.32□□□□□ -0.12
CCDC88A-201ENST00000263630 MAGEA2P43356 314 aa14.32□□□□□ -0.12
CCDC88A-201ENST00000263630 COPZ1P61923 177 aa14.32□□□□□ -0.12
CCDC88A-201ENST00000263630 PRKAA1Q13131 559 aa14.32□□□□□ -0.12
CCDC88A-201ENST00000263630 ZNF177Q13360 481 aaPredicted RBP14.32□□□□□ -0.12
CCDC88A-201ENST00000263630 RP9Q8TA86 221 aaKnown RBP14.32□□□□□ -0.12
CCDC88A-201ENST00000263630 SLC4A9Q96Q91 983 aa14.32□□□□□ -0.12
CCDC88A-201ENST00000263630 OSBPL5Q9H0X9 879 aaPredicted RBP14.32□□□□□ -0.12
CCDC88A-201ENST00000263630 ABATP80404 500 aa14.32□□□□□ -0.12
CCDC88A-201ENST00000263630 ATP2C1P98194 919 aaPredicted RBP14.32□□□□□ -0.12
CCDC88A-201ENST00000263630 TOMM20Q15388 145 aa14.32□□□□□ -0.12
CCDC88A-201ENST00000263630 BICRALQ6AI39 1079 aa14.32□□□□□ -0.12
CCDC88A-201ENST00000263630 ARID3BQ8IVW6 561 aaPredicted RBP14.32□□□□□ -0.12
CCDC88A-201ENST00000263630 OTUD5Q96G74 571 aa14.32□□□□□ -0.12
CCDC88A-201ENST00000263630 UBP1Q9NZI7 540 aa14.32□□□□□ -0.12
CCDC88A-201ENST00000263630 MYH9P35579 1960 aaKnown RBP14.32□□□□□ -0.12
CCDC88A-201ENST00000263630 AKR1B1P15121 316 aa14.32□□□□□ -0.12
CCDC88A-201ENST00000263630 ADARP55265 1226 aaKnown RBP14.32□□□□□ -0.12
CCDC88A-201ENST00000263630 LRRC4BQ9NT99 713 aa14.32□□□□□ -0.12
CCDC88A-201ENST00000263630 AHCYL1O43865 530 aa14.32□□□□□ -0.12
CCDC88A-201ENST00000263630 SKAP2O75563 359 aaPredicted RBP14.32□□□□□ -0.12
CCDC88A-201ENST00000263630 NQO1P15559 274 aaKnown RBP14.32□□□□□ -0.12
CCDC88A-201ENST00000263630 CLK3P49761 638 aaKnown RBP14.32□□□□□ -0.12
CCDC88A-201ENST00000263630 WDR72Q3MJ13 1102 aa14.32□□□□□ -0.12
CCDC88A-201ENST00000263630 CXXC5Q7LFL8 322 aaKnown RBP14.32□□□□□ -0.12
CCDC88A-201ENST00000263630 ZNF669Q96BR6 464 aaPredicted RBP14.32□□□□□ -0.12
CCDC88A-201ENST00000263630 ZSWIM5Q9P217 1185 aa14.32□□□□□ -0.12
CCDC88A-201ENST00000263630 MAGEB3O15480 346 aa14.32□□□□□ -0.12
CCDC88A-201ENST00000263630 PRKAR2AP13861 404 aaKnown RBP14.32□□□□□ -0.12
CCDC88A-201ENST00000263630 INO80DQ53TQ3 878 aaPredicted RBP14.32□□□□□ -0.12
CCDC88A-201ENST00000263630 TBCELQ5QJ74 424 aa14.32□□□□□ -0.12
CCDC88A-201ENST00000263630 NANOGNBQ7Z5D8 188 aa14.32□□□□□ -0.12
CCDC88A-201ENST00000263630 PIK3C3Q8NEB9 887 aa14.32□□□□□ -0.12
CCDC88A-201ENST00000263630 SPPL2AQ8TCT8 520 aa14.32□□□□□ -0.12
CCDC88A-201ENST00000263630 CAPSLQ8WWF8 208 aa14.32□□□□□ -0.12
CCDC88A-201ENST00000263630 COX4I2Q96KJ9 171 aa14.32□□□□□ -0.12
CCDC88A-201ENST00000263630 EPB41L4AQ9HCS5 686 aaPredicted RBP14.32□□□□□ -0.12
CCDC88A-201ENST00000263630 HAT1O14929 419 aa14.32□□□□□ -0.12
CCDC88A-201ENST00000263630 OMPP47874 163 aa14.32□□□□□ -0.12
CCDC88A-201ENST00000263630 DALRD3Q5D0E6 543 aaKnown RBP14.32□□□□□ -0.12
CCDC88A-201ENST00000263630 S100ZQ8WXG8 99 aa14.32□□□□□ -0.12
CCDC88A-201ENST00000263630 SNRPFP62306 86 aaKnown RBP14.32□□□□□ -0.12
CCDC88A-201ENST00000263630 KCNB1Q14721 858 aa14.32□□□□□ -0.12
CCDC88A-201ENST00000263630 AMER2Q8N7J2 671 aa14.32□□□□□ -0.12
CCDC88A-201ENST00000263630 G3V2T6 193 aa14.32□□□□□ -0.12
CCDC88A-201ENST00000263630 ASS1P00966 412 aaKnown RBP14.32□□□□□ -0.12
CCDC88A-201ENST00000263630 CYP2A7P20853 494 aa14.32□□□□□ -0.12
CCDC88A-201ENST00000263630 GEMP55040 296 aa14.32□□□□□ -0.12
CCDC88A-201ENST00000263630 RGS1Q08116 209 aa14.32□□□□□ -0.12
CCDC88A-201ENST00000263630 KCND2Q9NZV8 630 aa14.32□□□□□ -0.12
CCDC88A-201ENST00000263630 MTA1Q13330 715 aa14.31□□□□□ -0.12
CCDC88A-201ENST00000263630 EAF2Q96CJ1 260 aaPredicted RBP14.31□□□□□ -0.12
CCDC88A-201ENST00000263630 SMNDC1O75940 238 aaKnown RBP eCLIP14.31□□□□□ -0.12
CCDC88A-201ENST00000263630 TTC27Q6P3X3 843 aa14.31□□□□□ -0.12
CCDC88A-201ENST00000263630 TDRD5Q8NAT2 981 aaKnown RBP14.31□□□□□ -0.12
CCDC88A-201ENST00000263630 FNIP1Q8TF40 1166 aa14.31□□□□□ -0.12
CCDC88A-201ENST00000263630 TAGLN3Q9UI15 199 aa14.31□□□□□ -0.12
CCDC88A-201ENST00000263630 CCDC154A6NI56 674 aa14.31□□□□□ -0.12
CCDC88A-201ENST00000263630 TMEM63BQ5T3F8 832 aa14.31□□□□□ -0.12
CCDC88A-201ENST00000263630 ZDHHC13Q8IUH4 622 aa14.31□□□□□ -0.12
CCDC88A-201ENST00000263630 ARHGEF19Q8IW93 802 aa14.31□□□□□ -0.12
CCDC88A-201ENST00000263630 CDK5RAP1Q96SZ6 601 aaKnown RBP14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 86.8 ms