RNA–Protein interactions for RNA: YOR098C

NUP1, Transcript of FG-nucleoporin component of central core of the nuclear pore complex, yeast

Gene NUP1, Length 3,231 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP1	YOR098C	AQY2	P0CD90	149 aa		3.25	□□□□□ -1.89
NUP1	YOR098C	RPL43A	P0CX25	92 aa	Known RBP	3.24	□□□□□ -1.89
NUP1	YOR098C	RPL43B	P0CX26	92 aa		3.24	□□□□□ -1.89
NUP1	YOR098C	YCR095W-A	Q3E787	52 aa		3.23	□□□□□ -1.89
NUP1	YOR098C	YBL039W-B	P0C268	59 aa		3.23	□□□□□ -1.89
NUP1	YOR098C	RPC10	P40422	70 aa		3.23	□□□□□ -1.89
NUP1	YOR098C	YOL013W-A	P0C272	63 aa	Predicted RBP	3.21	□□□□□ -1.89
NUP1	YOR098C	YGR240C-A	Q3E786	66 aa		3.21	□□□□□ -1.9
NUP1	YOR098C	YHR212W-A	P0CX91	67 aa		3.21	□□□□□ -1.9
NUP1	YOR098C	YLR307C-A	Q3E825	87 aa		3.2	□□□□□ -1.9
NUP1	YOR098C	YIL156W-B	Q2V2P4	73 aa		3.19	□□□□□ -1.9
NUP1	YOR098C	YNL042W-B	Q3E7Z2	85 aa		3.18	□□□□□ -1.9
NUP1	YOR098C	YLR157W-D	P0CE99	70 aa		3.17	□□□□□ -1.9
NUP1	YOR098C	Q0297	Q9ZZV8	51 aa		3.17	□□□□□ -1.9
NUP1	YOR098C	BSC4	P53841	131 aa		3.16	□□□□□ -1.9
NUP1	YOR098C	YMR001C-A	Q8TGS9	76 aa		3.15	□□□□□ -1.9
NUP1	YOR098C	Q0032	Q9ZZX7	96 aa		3.15	□□□□□ -1.9
NUP1	YOR098C	AUA1	P32450	94 aa		3.15	□□□□□ -1.91
NUP1	YOR098C	YAR064W	P39563	99 aa		3.15	□□□□□ -1.91
NUP1	YOR098C	HUB1	Q6Q546	73 aa		3.15	□□□□□ -1.91
NUP1	YOR098C	GIS2	P53849	153 aa	Known RBP RIP-Chip data	3.15	□□□□□ -1.91	not detected
NUP1	YOR098C	SDH6	Q3E785	79 aa		3.15	□□□□□ -1.91
NUP1	YOR098C	SNA2	P56508	79 aa		3.14	□□□□□ -1.91
NUP1	YOR098C	LCL2	Q08045	131 aa		3.13	□□□□□ -1.91
NUP1	YOR098C	YOR072W	Q08486	104 aa		3.12	□□□□□ -1.91
NUP1	YOR098C	YLL066W-B	Q8TGJ7	56 aa		3.12	□□□□□ -1.91
NUP1	YOR098C	YDR210W	Q03482	75 aa		3.12	□□□□□ -1.91
NUP1	YOR098C	DDR2	P89113	61 aa		3.12	□□□□□ -1.91
NUP1	YOR098C	YGL041C-B	Q3E750	60 aa		3.11	□□□□□ -1.91
NUP1	YOR098C	SGF11	Q03067	99 aa		3.09	□□□□□ -1.91
NUP1	YOR098C	MRX7	P53869	86 aa		3.08	□□□□□ -1.92
NUP1	YOR098C	YNL122C	P53921	115 aa	Predicted RBP	3.08	□□□□□ -1.92
NUP1	YOR098C	ATP17	Q06405	101 aa		3.07	□□□□□ -1.92
NUP1	YOR098C	YLR255C	O13574	117 aa		3.02	□□□□□ -1.93
NUP1	YOR098C	YJR128W	P47162	119 aa		3.02	□□□□□ -1.93
NUP1	YOR098C	YJL009W	P47078	108 aa		3.01	□□□□□ -1.93
NUP1	YOR098C	DYN1	P36022	4092 aa		2.99	□□□□□ -1.93
NUP1	YOR098C	LCL1	Q02786	101 aa		2.96	□□□□□ -1.94
NUP1	YOR098C	YBR201C-A	Q2V2Q3	67 aa		2.96	□□□□□ -1.94
NUP1	YOR098C	YOL097W-A	Q3E7Y9	61 aa		2.95	□□□□□ -1.94
NUP1	YOR098C	YGR146C-A	Q8TGT9	53 aa		2.95	□□□□□ -1.94
NUP1	YOR098C	YOR316C-A	Q3E806	69 aa		2.91	□□□□□ -1.94
NUP1	YOR098C	YDR034C-A	P0C289	58 aa		2.9	□□□□□ -1.94
NUP1	YOR098C	YHR073W-A	P0C5N7	58 aa		2.87	□□□□□ -1.95
NUP1	YOR098C	RPL37B	P51402	88 aa	Known RBP	2.84	□□□□□ -1.95
NUP1	YOR098C	OLI1	P61829	76 aa		2.84	□□□□□ -1.96
NUP1	YOR098C	YBR016W	P38216	128 aa		2.83	□□□□□ -1.96
NUP1	YOR098C	YCR108C	Q3E819	63 aa		2.81	□□□□□ -1.96
NUP1	YOR098C	YBL044W	P38194	122 aa		2.77	□□□□□ -1.97
NUP1	YOR098C	MDN1	Q12019	4910 aa	Known RBP	2.77	□□□□□ -1.97
NUP1	YOR098C	YOR394C-A	Q8TGJ0	55 aa		2.76	□□□□□ -1.97
NUP1	YOR098C	HHY1	P39982	102 aa		2.72	□□□□□ -1.97
NUP1	YOR098C	COX7	P10174	60 aa		2.65	□□□□□ -1.98
NUP1	YOR098C	RPL37A	P49166	88 aa	Known RBP	2.56	□□□□□ -2
NUP1	YOR098C	YBR072C-A	Q3E794	53 aa		2.55	□□□□□ -2
NUP1	YOR098C	YOR072W-B	Q3E832	53 aa		2.46	□□□□□ -2.02
NUP1	YOR098C	YLR157W-E	P0CF00	54 aa		2.36	□□□□□ -2.03
NUP1	YOR098C	YML054C-A	Q3E809	52 aa		2.34	□□□□□ -2.03
NUP1	YOR098C	Q0017	Q9ZZX8	53 aa		2.3	□□□□□ -2.04
NUP1	YOR098C	YOL164W-A	Q3E7A5	60 aa		2.3	□□□□□ -2.04
NUP1	YOR098C	YHR050W-A	Q05451	56 aa		1.92	□□□□□ -2.1
NUP1	YOR098C	RPS29B	P41058	56 aa	Known RBP	1.88	□□□□□ -2.11
NUP1	YOR098C	RPS29A	P41057	56 aa	Known RBP	1.83	□□□□□ -2.12

Retrieved 63 of 5,963 RNA–protein pairs in 9.9 ms