RNA–Protein interactions for RNA: YCR093W

CDC39, Transcript of Component of the CCR4-NOT1 core complex, yeastyeast

Gene CDC39, Length 6,327 nt, Biotype protein coding.

RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC39YCR093W PUP1P25043 261 aa1.66□□□□□ -2.14
CDC39YCR093W AIM46P38885 310 aa1.66□□□□□ -2.14
CDC39YCR093W NOC3Q07896 663 aaPredicted RBP1.66□□□□□ -2.14
CDC39YCR093W RPP2AP05319 106 aaKnown RBP1.66□□□□□ -2.14
CDC39YCR093W SWI5P08153 709 aa1.66□□□□□ -2.14
CDC39YCR093W PAC1P39946 494 aaKnown RBP1.66□□□□□ -2.14
CDC39YCR093W MTC5Q03897 1148 aa1.66□□□□□ -2.14
CDC39YCR093W GIP1P38229 639 aa1.65□□□□□ -2.14
CDC39YCR093W ACS2P52910 683 aaKnown RBP1.65□□□□□ -2.14
CDC39YCR093W SUT1P53032 299 aaKnown RBP1.65□□□□□ -2.14
CDC39YCR093W SCW11P53189 542 aa1.65□□□□□ -2.14
CDC39YCR093W DSE4P53753 1117 aa1.65□□□□□ -2.14
CDC39YCR093W PMT7Q06644 662 aa1.65□□□□□ -2.14
CDC39YCR093W FPS1P23900 669 aa1.65□□□□□ -2.15
CDC39YCR093W PEP12P32854 288 aa1.65□□□□□ -2.15
CDC39YCR093W RVS167P39743 482 aaKnown RBP1.65□□□□□ -2.15
CDC39YCR093W NUP85P46673 744 aa1.65□□□□□ -2.15
CDC39YCR093W VTC4P47075 721 aa1.65□□□□□ -2.15
CDC39YCR093W FOL2P51601 243 aaKnown RBP1.65□□□□□ -2.15
CDC39YCR093W MTO1P53070 669 aa1.65□□□□□ -2.15
CDC39YCR093W NOP8Q08287 484 aaPredicted RBP1.65□□□□□ -2.15
CDC39YCR093W YOR296WQ08748 1289 aa1.65□□□□□ -2.15
CDC39YCR093W YBL086CP38177 466 aa1.65□□□□□ -2.15
CDC39YCR093W LYS5P50113 272 aa1.65□□□□□ -2.15
CDC39YCR093W IRE1P32361 1115 aa1.65□□□□□ -2.15
CDC39YCR093W APM2P38700 605 aa1.65□□□□□ -2.15
CDC39YCR093W RSM26P47141 266 aa1.65□□□□□ -2.15
CDC39YCR093W ATG36P46983 293 aa1.64□□□□□ -2.15
CDC39YCR093W PUS5Q06244 254 aa1.64□□□□□ -2.15
CDC39YCR093W HDA3Q06623 655 aa1.64□□□□□ -2.15
CDC39YCR093W DPH6Q12429 685 aa1.64□□□□□ -2.15
CDC39YCR093W AGE1Q04412 482 aa1.64□□□□□ -2.15
CDC39YCR093W STE6P12866 1290 aa1.64□□□□□ -2.15
CDC39YCR093W YHL008CP38750 627 aa1.64□□□□□ -2.15
CDC39YCR093W FPR3P38911 411 aaKnown RBP1.64□□□□□ -2.15
CDC39YCR093W AAD14P42884 376 aa1.64□□□□□ -2.15
CDC39YCR093W ENT3P47160 408 aa1.64□□□□□ -2.15
CDC39YCR093W YGL081WP53156 320 aa1.64□□□□□ -2.15
CDC39YCR093W DNF1P32660 1571 aa1.64□□□□□ -2.15
CDC39YCR093W VMA3P25515 160 aa1.64□□□□□ -2.15
CDC39YCR093W ASH1P34233 588 aa1.64□□□□□ -2.15
CDC39YCR093W CCZ1P38273 704 aa1.64□□□□□ -2.15
CDC39YCR093W ERF2Q06551 359 aa1.64□□□□□ -2.15
CDC39YCR093W INP54Q08227 384 aaKnown RBP1.64□□□□□ -2.15
CDC39YCR093W SLP1Q12232 587 aa1.64□□□□□ -2.15
CDC39YCR093W RPT1P33299 467 aaKnown RBP1.64□□□□□ -2.15
CDC39YCR093W ARL1P38116 183 aaKnown RBP1.64□□□□□ -2.15
CDC39YCR093W GGA2P38817 585 aaKnown RBP1.64□□□□□ -2.15
CDC39YCR093W GUP1P53154 560 aa1.64□□□□□ -2.15
CDC39YCR093W NBA1Q08229 501 aaKnown RBP1.64□□□□□ -2.15
CDC39YCR093W YOR059CQ08448 450 aaKnown RBP1.64□□□□□ -2.15
CDC39YCR093W LSO1Q3E827 93 aa1.64□□□□□ -2.15
CDC39YCR093W TY1A-DR4O74302 440 aa1.63□□□□□ -2.15
CDC39YCR093W TY1A-HP0C2I4 478 aaKnown RBP1.63□□□□□ -2.15
CDC39YCR093W TY1A-AP0CX57 440 aa1.63□□□□□ -2.15
CDC39YCR093W TY1A-PR1P0CX58 440 aa1.63□□□□□ -2.15
CDC39YCR093W TY1A-ORP0CX59 440 aa1.63□□□□□ -2.15
CDC39YCR093W TY1A-PR2P0CX60 440 aa1.63□□□□□ -2.15
CDC39YCR093W TY1A-DR5P0CX65 440 aa1.63□□□□□ -2.15
CDC39YCR093W TY1A-ER2P0CX66 440 aa1.63□□□□□ -2.15
CDC39YCR093W TY1A-GR3P0CX67 440 aa1.63□□□□□ -2.15
CDC39YCR093W TY1A-LR1P0CX68 440 aa1.63□□□□□ -2.15
CDC39YCR093W TY1A-MR2P0CX69 440 aa1.63□□□□□ -2.15
CDC39YCR093W MRPL33P20084 86 aa1.63□□□□□ -2.15
CDC39YCR093W GSY1P23337 708 aa1.63□□□□□ -2.15
CDC39YCR093W IPL1P38991 367 aa1.63□□□□□ -2.15
CDC39YCR093W CHZ1P40019 153 aaPredicted RBP1.63□□□□□ -2.15
CDC39YCR093W TY1A-JR2P47099 440 aa1.63□□□□□ -2.15
CDC39YCR093W BFA1P47113 574 aa1.63□□□□□ -2.15
CDC39YCR093W ROM1P53046 1155 aa1.63□□□□□ -2.15
CDC39YCR093W TY1A-DR1Q03856 440 aa1.63□□□□□ -2.15
CDC39YCR093W TY1A-ML1Q04706 440 aaKnown RBP1.63□□□□□ -2.15
CDC39YCR093W YMR074CQ04773 145 aa1.63□□□□□ -2.15
CDC39YCR093W TY1A-BRQ12217 440 aa1.63□□□□□ -2.15
CDC39YCR093W OSH2Q12451 1283 aa1.63□□□□□ -2.15
CDC39YCR093W TCB1Q12466 1186 aa1.63□□□□□ -2.15
CDC39YCR093W TY1A-NL2Q12470 440 aa1.63□□□□□ -2.15
CDC39YCR093W TY1A-GR2Q12485 440 aa1.63□□□□□ -2.15
CDC39YCR093W KAP122P32767 1081 aa1.63□□□□□ -2.15
CDC39YCR093W CEM1P39525 442 aa1.63□□□□□ -2.15
CDC39YCR093W NEO1P40527 1151 aa1.63□□□□□ -2.15
CDC39YCR093W YMR265CQ03508 461 aaKnown RBP1.63□□□□□ -2.15
CDC39YCR093W SPO20Q04359 397 aa1.63□□□□□ -2.15
CDC39YCR093W YPR084WQ06821 456 aa1.63□□□□□ -2.15
CDC39YCR093W Q0182Q9ZZW1 134 aa1.63□□□□□ -2.15
CDC39YCR093W QDR2P40474 542 aa1.63□□□□□ -2.15
CDC39YCR093W PTK2P47116 818 aaKnown RBP1.63□□□□□ -2.15
CDC39YCR093W YGR122WP53272 402 aa1.63□□□□□ -2.15
CDC39YCR093W AVO1Q08236 1176 aa1.63□□□□□ -2.15
CDC39YCR093W SAC7P17121 654 aa1.63□□□□□ -2.15
CDC39YCR093W JJJ2P46997 583 aa1.63□□□□□ -2.15
CDC39YCR093W VPS53P47061 822 aa1.63□□□□□ -2.15
CDC39YCR093W CDC11P32458 415 aa1.63□□□□□ -2.15
CDC39YCR093W BRN1P38170 754 aa1.63□□□□□ -2.15
CDC39YCR093W GEM1P39722 662 aa1.63□□□□□ -2.15
CDC39YCR093W DAL4Q04895 635 aa1.63□□□□□ -2.15
CDC39YCR093W SEC23P15303 768 aaKnown RBP1.62□□□□□ -2.15
CDC39YCR093W ERP5P38819 212 aa1.62□□□□□ -2.15
CDC39YCR093W SPO71Q03868 1245 aa1.62□□□□□ -2.15
CDC39YCR093W RGP1P16664 663 aa1.62□□□□□ -2.15
Retrieved 100 of 5,963 RNA–protein pairs in 12.6 ms