RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 GDF11O95390 407 aa2.61□□□□□ -1.99
VPS35-212ENST00000640313 OATP04181 439 aa2.61□□□□□ -1.99
VPS35-212ENST00000640313 ATP6V1AP38606 617 aa2.61□□□□□ -1.99
VPS35-212ENST00000640313 RASSF7Q02833 373 aa2.61□□□□□ -1.99
VPS35-212ENST00000640313 TRIM46Q7Z4K8 759 aa2.61□□□□□ -1.99
VPS35-212ENST00000640313 SLC27A5Q9Y2P5 690 aa2.61□□□□□ -1.99
VPS35-212ENST00000640313 IGHA1P01876 353 aa2.6□□□□□ -1.99
VPS35-212ENST00000640313 MMP16P51512 607 aa2.6□□□□□ -1.99
VPS35-212ENST00000640313 WNT7BP56706 349 aa2.6□□□□□ -1.99
VPS35-212ENST00000640313 XP32Q5T750 250 aa2.6□□□□□ -1.99
VPS35-212ENST00000640313 RC3H1Q5TC82 1133 aaKnown RBP2.6□□□□□ -1.99
VPS35-212ENST00000640313 KRTAP4-8Q9BYQ9 185 aa2.6□□□□□ -1.99
VPS35-212ENST00000640313 PRDM9Q9NQV7 894 aa2.6□□□□□ -1.99
VPS35-212ENST00000640313 RNF225M0QZC1 329 aaPredicted RBP2.59□□□□□ -1.99
VPS35-212ENST00000640313 CAPN5O15484 640 aaPredicted RBP2.59□□□□□ -1.99
VPS35-212ENST00000640313 FECHP22830 423 aa2.59□□□□□ -1.99
VPS35-212ENST00000640313 SKOR1P84550 965 aa2.59□□□□□ -1.99
VPS35-212ENST00000640313 FUT2Q10981 343 aa2.59□□□□□ -1.99
VPS35-212ENST00000640313 FAM161AQ3B820 660 aa2.59□□□□□ -1.99
VPS35-212ENST00000640313 PXYLP1Q8TE99 480 aa2.59□□□□□ -1.99
VPS35-212ENST00000640313 WDR70Q9NW82 654 aa2.59□□□□□ -1.99
VPS35-212ENST00000640313 SIAH2O43255 324 aa2.58□□□□□ -2
VPS35-212ENST00000640313 ALDH1A1P00352 501 aa2.58□□□□□ -2
VPS35-212ENST00000640313 BMP1P13497 986 aa2.58□□□□□ -2
VPS35-212ENST00000640313 GCGRP47871 477 aa2.58□□□□□ -2
VPS35-212ENST00000640313 ZFP42Q96MM3 310 aa2.58□□□□□ -2
VPS35-212ENST00000640313 DAXXQ9UER7 740 aaPredicted RBP2.58□□□□□ -2
VPS35-212ENST00000640313 DXOO77932 396 aaKnown RBP2.57□□□□□ -2
VPS35-212ENST00000640313 FOXK2Q01167 660 aa2.57□□□□□ -2
VPS35-212ENST00000640313 GRIPAP1Q4V328 841 aa2.57□□□□□ -2
VPS35-212ENST00000640313 RNF19BQ6ZMZ0 732 aa2.57□□□□□ -2
VPS35-212ENST00000640313 METTL3Q86U44 580 aaKnown RBP2.57□□□□□ -2
VPS35-212ENST00000640313 ADAMTS8Q9UP79 889 aa2.57□□□□□ -2
VPS35-212ENST00000640313 DNMT3AQ9Y6K1 912 aaPredicted RBP2.57□□□□□ -2
VPS35-212ENST00000640313 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.56□□□□□ -2
VPS35-212ENST00000640313 FCHSD2O94868 740 aa2.56□□□□□ -2
VPS35-212ENST00000640313 MLLT3P42568 568 aaPredicted RBP2.56□□□□□ -2
VPS35-212ENST00000640313 Q3C1V9 767 aa2.56□□□□□ -2
VPS35-212ENST00000640313 RDH13Q8NBN7 331 aa2.56□□□□□ -2
VPS35-212ENST00000640313 WASF2Q9Y6W5 498 aa2.56□□□□□ -2
VPS35-212ENST00000640313 NUTM2FA1L443 756 aa2.55□□□□□ -2
VPS35-212ENST00000640313 GPAT2Q6NUI2 795 aa2.55□□□□□ -2
VPS35-212ENST00000640313 KANK3Q6NY19 840 aa2.55□□□□□ -2
VPS35-212ENST00000640313 MRPL14Q6P1L8 145 aaKnown RBP2.55□□□□□ -2
VPS35-212ENST00000640313 SULF1Q8IWU6 871 aa2.55□□□□□ -2
VPS35-212ENST00000640313 BBXQ8WY36 941 aaPredicted RBP2.55□□□□□ -2
VPS35-212ENST00000640313 USB1Q9BQ65 265 aaKnown RBP2.55□□□□□ -2
VPS35-212ENST00000640313 KRTAP9-2Q9BYQ4 174 aa2.55□□□□□ -2
VPS35-212ENST00000640313 DDX11L8A8MPP1 907 aa2.54□□□□□ -2
VPS35-212ENST00000640313 ADAM23O75077 832 aa2.54□□□□□ -2
VPS35-212ENST00000640313 PPFIA3O75145 1194 aa2.54□□□□□ -2
VPS35-212ENST00000640313 SCARF1Q14162 830 aa2.54□□□□□ -2
VPS35-212ENST00000640313 MPNDQ8N594 471 aa2.54□□□□□ -2
VPS35-212ENST00000640313 EHBP1Q8NDI1 1231 aa2.54□□□□□ -2
VPS35-212ENST00000640313 ARHGEF1Q92888 912 aaKnown RBP2.54□□□□□ -2
VPS35-212ENST00000640313 KRTAP9-6A0A140TA67 174 aa2.53□□□□□ -2
VPS35-212ENST00000640313 DCAF8L2P0C7V8 631 aa2.53□□□□□ -2
VPS35-212ENST00000640313 KRT76Q01546 638 aa2.53□□□□□ -2
VPS35-212ENST00000640313 HIC1Q14526 733 aa2.53□□□□□ -2
VPS35-212ENST00000640313 ZNF385CQ66K41 422 aaPredicted RBP2.53□□□□□ -2
VPS35-212ENST00000640313 CCDC24Q8N4L8 307 aa2.53□□□□□ -2
VPS35-212ENST00000640313 SPRYD3Q8NCJ5 442 aa2.53□□□□□ -2
VPS35-212ENST00000640313 PSMG3-AS1Q96PY0 264 aa2.53□□□□□ -2
VPS35-212ENST00000640313 PLEKHG3A1L390 1219 aa2.52□□□□□ -2.01
VPS35-212ENST00000640313 SOBPA7XYQ1 873 aa2.52□□□□□ -2.01
VPS35-212ENST00000640313 ARHGEF15O94989 841 aa2.52□□□□□ -2.01
VPS35-212ENST00000640313 IRS1P35568 1242 aa2.52□□□□□ -2.01
VPS35-212ENST00000640313 SH3BP2P78314 561 aa2.52□□□□□ -2.01
VPS35-212ENST00000640313 GPR161Q8N6U8 529 aaKnown RBP2.52□□□□□ -2.01
VPS35-212ENST00000640313 CNTNAP3BQ96NU0 1288 aa2.52□□□□□ -2.01
VPS35-212ENST00000640313 PURBQ96QR8 312 aaKnown RBP2.52□□□□□ -2.01
VPS35-212ENST00000640313 KLF16Q9BXK1 252 aaPredicted RBP2.52□□□□□ -2.01
VPS35-212ENST00000640313 CNTNAP3Q9BZ76 1288 aa2.52□□□□□ -2.01
VPS35-212ENST00000640313 MAN1A2O60476 641 aa2.51□□□□□ -2.01
VPS35-212ENST00000640313 SLURP2P0DP57 97 aa2.51□□□□□ -2.01
VPS35-212ENST00000640313 TIMP2P16035 220 aa2.51□□□□□ -2.01
VPS35-212ENST00000640313 NNTQ13423 1086 aa2.51□□□□□ -2.01
VPS35-212ENST00000640313 PTCRAQ6ISU1 281 aaPredicted RBP2.51□□□□□ -2.01
VPS35-212ENST00000640313 NANOS1Q8WY41 292 aaKnown RBP2.51□□□□□ -2.01
VPS35-212ENST00000640313 SCARF2Q96GP6 870 aaPredicted RBP2.51□□□□□ -2.01
VPS35-212ENST00000640313 MSTNO14793 375 aa2.5□□□□□ -2.01
VPS35-212ENST00000640313 ADH1CP00326 375 aa2.5□□□□□ -2.01
VPS35-212ENST00000640313 JUNDP17535 347 aa2.5□□□□□ -2.01
VPS35-212ENST00000640313 VARSP26640 1264 aaKnown RBP2.5□□□□□ -2.01
VPS35-212ENST00000640313 MARSP56192 900 aaKnown RBP2.5□□□□□ -2.01
VPS35-212ENST00000640313 WDR4P57081 412 aaKnown RBP2.5□□□□□ -2.01
VPS35-212ENST00000640313 KRTAP1-3Q8IUG1 177 aa2.5□□□□□ -2.01
VPS35-212ENST00000640313 GNPATO15228 680 aa2.49□□□□□ -2.01
VPS35-212ENST00000640313 KDM4AO75164 1064 aa2.49□□□□□ -2.01
VPS35-212ENST00000640313 CD46P15529 392 aa2.49□□□□□ -2.01
VPS35-212ENST00000640313 USP46P62068 366 aa2.49□□□□□ -2.01
VPS35-212ENST00000640313 SVOPQ8N4V2 548 aa2.49□□□□□ -2.01
VPS35-212ENST00000640313 PHOX2BQ99453 314 aa2.49□□□□□ -2.01
VPS35-212ENST00000640313 NUDT12Q9BQG2 462 aa2.49□□□□□ -2.01
VPS35-212ENST00000640313 COL25A1Q9BXS0 654 aaPredicted RBP2.49□□□□□ -2.01
VPS35-212ENST00000640313 TLL2Q9Y6L7 1015 aa2.49□□□□□ -2.01
VPS35-212ENST00000640313 SOS2Q07890 1332 aaPredicted RBP2.48□□□□□ -2.01
VPS35-212ENST00000640313 ITGB2P05107 769 aa2.48□□□□□ -2.01
VPS35-212ENST00000640313 PLA2G4EQ3MJ16 856 aa2.48□□□□□ -2.01
VPS35-212ENST00000640313 RNFT1Q5M7Z0 435 aa2.48□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 89.1 ms