RNA–Protein interactions for RNA: ENST00000618902.1

SHMT1-211, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 5 BASIC

Gene SHMT1, Length 378 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-211ENST00000618902 TRPM1Q7Z4N2 1603 aa7.51□□□□□ -1.21
SHMT1-211ENST00000618902 SCAF1Q9H7N4 1312 aaKnown RBP7.51□□□□□ -1.21
SHMT1-211ENST00000618902 SIPA1L2Q9P2F8 1722 aaPredicted RBP7.5□□□□□ -1.21
SHMT1-211ENST00000618902 KIAA1210Q9ULL0 1709 aa7.5□□□□□ -1.21
SHMT1-211ENST00000618902 GPRASP1Q5JY77 1395 aa7.5□□□□□ -1.21
SHMT1-211ENST00000618902 SPATA31A6Q5VVP1 1343 aa7.5□□□□□ -1.21
SHMT1-211ENST00000618902 KNDC1Q76NI1 1749 aa7.49□□□□□ -1.21
SHMT1-211ENST00000618902 RALGAPBQ86X10 1494 aa7.49□□□□□ -1.21
SHMT1-211ENST00000618902 EIF3AQ14152 1382 aaKnown RBP7.49□□□□□ -1.21
SHMT1-211ENST00000618902 JCADQ9P266 1359 aa7.49□□□□□ -1.21
SHMT1-211ENST00000618902 DLC1Q96QB1 1528 aa7.49□□□□□ -1.21
SHMT1-211ENST00000618902 SLC24A1O60721 1099 aa7.49□□□□□ -1.21
SHMT1-211ENST00000618902 SAFB2Q14151 953 aaKnown RBP eCLIP7.49□□□□□ -1.21
SHMT1-211ENST00000618902 LRRC59Q96AG4 307 aaKnown RBP7.49□□□□□ -1.21
SHMT1-211ENST00000618902 PRAM1Q96QH2 718 aa7.49□□□□□ -1.21
SHMT1-211ENST00000618902 NALCNQ8IZF0 1738 aa7.49□□□□□ -1.21
SHMT1-211ENST00000618902 TIMELESSQ9UNS1 1208 aa7.48□□□□□ -1.21
SHMT1-211ENST00000618902 AHDC1Q5TGY3 1603 aaPredicted RBP7.48□□□□□ -1.21
SHMT1-211ENST00000618902 ROCK2O75116 1388 aaKnown RBP7.47□□□□□ -1.21
SHMT1-211ENST00000618902 ARHGEF28Q8N1W1 1705 aaKnown RBP7.47□□□□□ -1.21
SHMT1-211ENST00000618902 CDC42BPGQ6DT37 1551 aa7.47□□□□□ -1.21
SHMT1-211ENST00000618902 MST1RQ04912 1400 aa7.47□□□□□ -1.21
SHMT1-211ENST00000618902 BRINP3Q76B58 766 aa7.47□□□□□ -1.21
SHMT1-211ENST00000618902 ROBO1Q9Y6N7 1651 aa7.47□□□□□ -1.21
SHMT1-211ENST00000618902 DISP3Q9P2K9 1392 aa7.46□□□□□ -1.21
SHMT1-211ENST00000618902 HIRIP3Q9BW71 556 aaPredicted RBP7.46□□□□□ -1.22
SHMT1-211ENST00000618902 NPHP3Q7Z494 1330 aa7.46□□□□□ -1.22
SHMT1-211ENST00000618902 MINK1Q8N4C8 1332 aaPredicted RBP7.46□□□□□ -1.22
SHMT1-211ENST00000618902 C1orf167Q5SNV9 1468 aa7.45□□□□□ -1.22
SHMT1-211ENST00000618902 CARD11Q9BXL7 1154 aa7.45□□□□□ -1.22
SHMT1-211ENST00000618902 POGKQ9P215 609 aa7.45□□□□□ -1.22
SHMT1-211ENST00000618902 PRR36Q9H6K5 1346 aa7.45□□□□□ -1.22
SHMT1-211ENST00000618902 ANKARQ7Z5J8 1434 aa7.44□□□□□ -1.22
SHMT1-211ENST00000618902 NUTM2FA1L443 756 aa7.44□□□□□ -1.22
SHMT1-211ENST00000618902 SOS2Q07890 1332 aaPredicted RBP7.44□□□□□ -1.22
SHMT1-211ENST00000618902 CENPJQ9HC77 1338 aaPredicted RBP7.44□□□□□ -1.22
SHMT1-211ENST00000618902 ADGRB2O60241 1585 aa7.43□□□□□ -1.22
SHMT1-211ENST00000618902 PSME1Q06323 249 aa7.43□□□□□ -1.22
SHMT1-211ENST00000618902 ZNF772Q68DY9 489 aaPredicted RBP7.43□□□□□ -1.22
SHMT1-211ENST00000618902 DDX17Q92841 729 aaKnown RBP7.43□□□□□ -1.22
SHMT1-211ENST00000618902 TESK2Q96S53 571 aa7.43□□□□□ -1.22
SHMT1-211ENST00000618902 ORAI2Q96SN7 254 aa7.43□□□□□ -1.22
SHMT1-211ENST00000618902 FMN2Q9NZ56 1722 aa7.43□□□□□ -1.22
SHMT1-211ENST00000618902 BRD4O60885 1362 aaPredicted RBP7.43□□□□□ -1.22
SHMT1-211ENST00000618902 TULP4Q9NRJ4 1543 aa7.42□□□□□ -1.22
SHMT1-211ENST00000618902 USP32Q8NFA0 1604 aa7.42□□□□□ -1.22
SHMT1-211ENST00000618902 PHLPP1O60346 1717 aa7.42□□□□□ -1.22
SHMT1-211ENST00000618902 ST20-MTHFSA0A0A6YYL1 179 aa7.42□□□□□ -1.22
SHMT1-211ENST00000618902 WASLO00401 505 aaPredicted RBP7.42□□□□□ -1.22
SHMT1-211ENST00000618902 CDK19Q9BWU1 502 aa7.42□□□□□ -1.22
SHMT1-211ENST00000618902 USP47Q96K76 1375 aa7.42□□□□□ -1.22
SHMT1-211ENST00000618902 MED1Q15648 1581 aaPredicted RBP7.42□□□□□ -1.22
SHMT1-211ENST00000618902 COL16A1Q07092 1604 aaPredicted RBP7.41□□□□□ -1.22
SHMT1-211ENST00000618902 NHSL1Q5SYE7 1610 aa7.41□□□□□ -1.22
SHMT1-211ENST00000618902 SHPRHQ149N8 1683 aa7.41□□□□□ -1.22
SHMT1-211ENST00000618902 PELP1Q8IZL8 1130 aaKnown RBP7.41□□□□□ -1.22
SHMT1-211ENST00000618902 QRICH2Q9H0J4 1663 aa7.41□□□□□ -1.22
SHMT1-211ENST00000618902 RGPD8O14715 1765 aaPredicted RBP7.41□□□□□ -1.22
SHMT1-211ENST00000618902 SOCS7O14512 581 aa7.4□□□□□ -1.22
SHMT1-211ENST00000618902 ESCO1Q5FWF5 840 aa7.4□□□□□ -1.22
SHMT1-211ENST00000618902 PUS7Q96PZ0 661 aaKnown RBP7.4□□□□□ -1.22
SHMT1-211ENST00000618902 CABP2Q9NPB3 220 aa7.4□□□□□ -1.22
SHMT1-211ENST00000618902 ATP7BP35670 1465 aa7.4□□□□□ -1.22
SHMT1-211ENST00000618902 KIF1AQ12756 1690 aa7.4□□□□□ -1.23
SHMT1-211ENST00000618902 SBNO1A3KN83 1393 aa7.39□□□□□ -1.23
SHMT1-211ENST00000618902 ARHGEF10O15013 1369 aa7.39□□□□□ -1.23
SHMT1-211ENST00000618902 SBNO2Q9Y2G9 1366 aa7.39□□□□□ -1.23
SHMT1-211ENST00000618902 HSPA5P11021 654 aaKnown RBP7.39□□□□□ -1.23
SHMT1-211ENST00000618902 NUDT16Q96DE0 195 aaKnown RBP7.39□□□□□ -1.23
SHMT1-211ENST00000618902 XPCQ01831 940 aaPredicted RBP7.38□□□□□ -1.23
SHMT1-211ENST00000618902 PMFBP1Q8TBY8 1022 aa7.38□□□□□ -1.23
SHMT1-211ENST00000618902 PHF8Q9UPP1 1060 aa7.38□□□□□ -1.23
SHMT1-211ENST00000618902 CCDC61Q9Y6R9 512 aa7.38□□□□□ -1.23
SHMT1-211ENST00000618902 EP400Q96L91 3159 aa7.38□□□□□ -1.23
SHMT1-211ENST00000618902 PNPLA6Q8IY17 1366 aa7.37□□□□□ -1.23
SHMT1-211ENST00000618902 C11orf95C9JLR9 678 aaPredicted RBP7.37□□□□□ -1.23
SHMT1-211ENST00000618902 FOXO3O43524 673 aa7.37□□□□□ -1.23
SHMT1-211ENST00000618902 MEX3CQ5U5Q3 659 aaKnown RBP7.37□□□□□ -1.23
SHMT1-211ENST00000618902 PXDNQ92626 1479 aa7.36□□□□□ -1.23
SHMT1-211ENST00000618902 CDK12Q9NYV4 1490 aaPredicted RBP7.36□□□□□ -1.23
SHMT1-211ENST00000618902 SPATA31A3Q5VYP0 1347 aa7.36□□□□□ -1.23
SHMT1-211ENST00000618902 EVC2Q86UK5 1308 aa7.36□□□□□ -1.23
SHMT1-211ENST00000618902 TOPAZ1Q8N9V7 1692 aa7.36□□□□□ -1.23
SHMT1-211ENST00000618902 PLEKHG3A1L390 1219 aa7.36□□□□□ -1.23
SHMT1-211ENST00000618902 SRPK2P78362 688 aaKnown RBP7.36□□□□□ -1.23
SHMT1-211ENST00000618902 FNBP4Q8N3X1 1017 aaPredicted RBP7.36□□□□□ -1.23
SHMT1-211ENST00000618902 NGLY1Q96IV0 654 aa7.36□□□□□ -1.23
SHMT1-211ENST00000618902 ZNF692Q9BU19 519 aaPredicted RBP7.36□□□□□ -1.23
SHMT1-211ENST00000618902 COL22A1Q8NFW1 1626 aaPredicted RBP7.36□□□□□ -1.23
SHMT1-211ENST00000618902 SRCAPQ6ZRS2 3230 aa7.36□□□□□ -1.23
SHMT1-211ENST00000618902 EIF4G2P78344 907 aaKnown RBP eCLIP7.35□□□□□ -1.23
SHMT1-211ENST00000618902 KRT28Q7Z3Y7 464 aa7.35□□□□□ -1.23
SHMT1-211ENST00000618902 CABP1Q9NZU7 370 aa7.35□□□□□ -1.23
SHMT1-211ENST00000618902 CD163L1Q9NR16 1453 aa7.35□□□□□ -1.23
SHMT1-211ENST00000618902 PPIP5K1Q6PFW1 1433 aa7.35□□□□□ -1.23
SHMT1-211ENST00000618902 POLR3AO14802 1390 aaPredicted RBP7.34□□□□□ -1.23
SHMT1-211ENST00000618902 ACEP12821 1306 aa7.34□□□□□ -1.23
SHMT1-211ENST00000618902 SLC12A5Q9H2X9 1139 aa7.34□□□□□ -1.23
SHMT1-211ENST00000618902 TNS3Q68CZ2 1445 aa7.34□□□□□ -1.23
SHMT1-211ENST00000618902 ATAD2Q6PL18 1390 aa7.33□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms