RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 NBPF8Q3BBV2 869 aa28.16■■■□□ 2.1
SHKBP1-221ENST00000599833 ATF3P18847 181 aa28.13■■■□□ 2.09
SHKBP1-221ENST00000599833 HSPA1LP34931 641 aa28.13■■■□□ 2.09
SHKBP1-221ENST00000599833 SCAF1Q9H7N4 1312 aaKnown RBP28.13■■■□□ 2.09
SHKBP1-221ENST00000599833 TONSLQ96HA7 1378 aa28.12■■■□□ 2.09
SHKBP1-221ENST00000599833 ADGRB2O60241 1585 aa28.12■■■□□ 2.09
SHKBP1-221ENST00000599833 TRAK1Q9UPV9 953 aa28.12■■■□□ 2.09
SHKBP1-221ENST00000599833 FMN2Q9NZ56 1722 aa28.12■■■□□ 2.09
SHKBP1-221ENST00000599833 PRAM1Q96QH2 718 aa28.11■■■□□ 2.09
SHKBP1-221ENST00000599833 C1orf167Q5SNV9 1468 aa28.09■■■□□ 2.09
SHKBP1-221ENST00000599833 GPRASP1Q5JY77 1395 aa28.07■■■□□ 2.08
SHKBP1-221ENST00000599833 AHDC1Q5TGY3 1603 aaPredicted RBP28.07■■■□□ 2.08
SHKBP1-221ENST00000599833 BRINP3Q76B58 766 aa28.06■■■□□ 2.08
SHKBP1-221ENST00000599833 RALGAPBQ86X10 1494 aa28.06■■■□□ 2.08
SHKBP1-221ENST00000599833 NHSL1Q5SYE7 1610 aa28.06■■■□□ 2.08
SHKBP1-221ENST00000599833 COL16A1Q07092 1604 aaPredicted RBP28.04■■■□□ 2.08
SHKBP1-221ENST00000599833 USP32Q8NFA0 1604 aa28.03■■■□□ 2.08
SHKBP1-221ENST00000599833 PHLPP1O60346 1717 aa28.02■■■□□ 2.08
SHKBP1-221ENST00000599833 SAFB2Q14151 953 aaKnown RBP eCLIP28.02■■■□□ 2.08
SHKBP1-221ENST00000599833 RGPD8O14715 1765 aaPredicted RBP28.01■■■□□ 2.08
SHKBP1-221ENST00000599833 POGKQ9P215 609 aa27.99■■■□□ 2.07
SHKBP1-221ENST00000599833 ROCK2O75116 1388 aaKnown RBP27.99■■■□□ 2.07
SHKBP1-221ENST00000599833 CCER1Q8TC90 406 aaPredicted RBP27.97■■■□□ 2.07
SHKBP1-221ENST00000599833 ORAI2Q96SN7 254 aa27.97■■■□□ 2.07
SHKBP1-221ENST00000599833 QRICH2Q9H0J4 1663 aa27.97■■■□□ 2.07
SHKBP1-221ENST00000599833 TIMELESSQ9UNS1 1208 aa27.96■■■□□ 2.07
SHKBP1-221ENST00000599833 MINK1Q8N4C8 1332 aaPredicted RBP27.94■■■□□ 2.06
SHKBP1-221ENST00000599833 HIRIP3Q9BW71 556 aaPredicted RBP27.93■■■□□ 2.06
SHKBP1-221ENST00000599833 TULP4Q9NRJ4 1543 aa27.92■■■□□ 2.06
SHKBP1-221ENST00000599833 DDX17Q92841 729 aaKnown RBP27.91■■■□□ 2.06
SHKBP1-221ENST00000599833 ANKARQ7Z5J8 1434 aa27.91■■■□□ 2.06
SHKBP1-221ENST00000599833 PRR36Q9H6K5 1346 aa27.91■■■□□ 2.06
SHKBP1-221ENST00000599833 NUTM2FA1L443 756 aa27.9■■■□□ 2.06
SHKBP1-221ENST00000599833 WASLO00401 505 aaPredicted RBP27.89■■■□□ 2.06
SHKBP1-221ENST00000599833 CENPJQ9HC77 1338 aaPredicted RBP27.89■■■□□ 2.05
SHKBP1-221ENST00000599833 KIF1AQ12756 1690 aa27.88■■■□□ 2.05
SHKBP1-221ENST00000599833 ATP7BP35670 1465 aa27.88■■■□□ 2.05
SHKBP1-221ENST00000599833 TOPAZ1Q8N9V7 1692 aa27.87■■■□□ 2.05
SHKBP1-221ENST00000599833 PXDNQ92626 1479 aa27.86■■■□□ 2.05
SHKBP1-221ENST00000599833 SHPRHQ149N8 1683 aa27.85■■■□□ 2.05
SHKBP1-221ENST00000599833 ESCO1Q5FWF5 840 aa27.84■■■□□ 2.05
SHKBP1-221ENST00000599833 CARD11Q9BXL7 1154 aa27.84■■■□□ 2.05
SHKBP1-221ENST00000599833 SOS2Q07890 1332 aaPredicted RBP27.84■■■□□ 2.05
SHKBP1-221ENST00000599833 MED1Q15648 1581 aaPredicted RBP27.81■■■□□ 2.04
SHKBP1-221ENST00000599833 CDK19Q9BWU1 502 aa27.8■■■□□ 2.04
SHKBP1-221ENST00000599833 SBNO2Q9Y2G9 1366 aa27.8■■■□□ 2.04
SHKBP1-221ENST00000599833 ITSN1Q15811 1721 aa27.8■■■□□ 2.04
SHKBP1-221ENST00000599833 EIF3AQ14152 1382 aaKnown RBP27.79■■■□□ 2.04
SHKBP1-221ENST00000599833 JCADQ9P266 1359 aa27.79■■■□□ 2.04
SHKBP1-221ENST00000599833 FOXO3O43524 673 aa27.76■■■□□ 2.03
SHKBP1-221ENST00000599833 PHF8Q9UPP1 1060 aa27.76■■■□□ 2.03
SHKBP1-221ENST00000599833 TRPM3Q9HCF6 1732 aaPredicted RBP27.75■■■□□ 2.03
SHKBP1-221ENST00000599833 NPHP3Q7Z494 1330 aa27.74■■■□□ 2.03
SHKBP1-221ENST00000599833 NUDT16Q96DE0 195 aaKnown RBP27.74■■■□□ 2.03
SHKBP1-221ENST00000599833 COL22A1Q8NFW1 1626 aaPredicted RBP27.74■■■□□ 2.03
SHKBP1-221ENST00000599833 PNPLA6Q8IY17 1366 aa27.73■■■□□ 2.03
SHKBP1-221ENST00000599833 LRP6O75581 1613 aa27.73■■■□□ 2.03
SHKBP1-221ENST00000599833 TESK2Q96S53 571 aa27.71■■■□□ 2.03
SHKBP1-221ENST00000599833 XPCQ01831 940 aaPredicted RBP27.7■■■□□ 2.02
SHKBP1-221ENST00000599833 PMFBP1Q8TBY8 1022 aa27.7■■■□□ 2.02
SHKBP1-221ENST00000599833 LRRC59Q96AG4 307 aaKnown RBP27.7■■■□□ 2.02
SHKBP1-221ENST00000599833 CABP2Q9NPB3 220 aa27.69■■■□□ 2.02
SHKBP1-221ENST00000599833 POLR3AO14802 1390 aaPredicted RBP27.68■■■□□ 2.02
SHKBP1-221ENST00000599833 USP47Q96K76 1375 aa27.68■■■□□ 2.02
SHKBP1-221ENST00000599833 ALS2Q96Q42 1657 aa27.66■■■□□ 2.02
SHKBP1-221ENST00000599833 ST20-MTHFSA0A0A6YYL1 179 aa27.66■■■□□ 2.02
SHKBP1-221ENST00000599833 CCDC61Q9Y6R9 512 aa27.66■■■□□ 2.02
SHKBP1-221ENST00000599833 EVC2Q86UK5 1308 aa27.66■■■□□ 2.02
SHKBP1-221ENST00000599833 PLEKHG3A1L390 1219 aa27.65■■■□□ 2.02
SHKBP1-221ENST00000599833 KRT28Q7Z3Y7 464 aa27.65■■■□□ 2.02
SHKBP1-221ENST00000599833 SPATA31A6Q5VVP1 1343 aa27.65■■■□□ 2.02
SHKBP1-221ENST00000599833 SPATA31A3Q5VYP0 1347 aa27.64■■■□□ 2.01
SHKBP1-221ENST00000599833 SBNO1A3KN83 1393 aa27.63■■■□□ 2.01
SHKBP1-221ENST00000599833 PPIP5K1Q6PFW1 1433 aa27.63■■■□□ 2.01
SHKBP1-221ENST00000599833 SRPK2P78362 688 aaKnown RBP27.62■■■□□ 2.01
SHKBP1-221ENST00000599833 TNS3Q68CZ2 1445 aa27.61■■■□□ 2.01
SHKBP1-221ENST00000599833 ABCA3Q99758 1704 aa27.59■■■□□ 2.01
SHKBP1-221ENST00000599833 ACEP12821 1306 aa27.59■■■□□ 2.01
SHKBP1-221ENST00000599833 CRYBG1Q9Y4K1 1723 aa27.58■■■□□ 2.01
SHKBP1-221ENST00000599833 AKAP12Q02952 1782 aa27.58■■■□□ 2.01
SHKBP1-221ENST00000599833 PSME1Q06323 249 aa27.56■■■□□ 2
SHKBP1-221ENST00000599833 DISP3Q9P2K9 1392 aa27.56■■■□□ 2
SHKBP1-221ENST00000599833 CABP1Q9NZU7 370 aa27.55■■■□□ 2
SHKBP1-221ENST00000599833 RGS17Q9UGC6 210 aaPredicted RBP27.55■■■□□ 2
SHKBP1-221ENST00000599833 ATAD2Q6PL18 1390 aa27.55■■■□□ 2
SHKBP1-221ENST00000599833 CD163L1Q9NR16 1453 aa27.55■■■□□ 2
SHKBP1-221ENST00000599833 SSH2Q76I76 1423 aa27.54■■■□□ 2
SHKBP1-221ENST00000599833 NGDNQ8NEJ9 315 aaKnown RBP27.54■■■□□ 2
SHKBP1-221ENST00000599833 PUS7Q96PZ0 661 aaKnown RBP27.53■■■□□ 2
SHKBP1-221ENST00000599833 MARF1Q9Y4F3 1742 aaKnown RBP27.53■■■□□ 2
SHKBP1-221ENST00000599833 NRKQ7Z2Y5 1582 aa27.52■■■□□ 2
SHKBP1-221ENST00000599833 CPSF1Q10570 1443 aaKnown RBP27.52■■■□□ 2
SHKBP1-221ENST00000599833 USP6P35125 1406 aa27.5■■□□□ 1.99
SHKBP1-221ENST00000599833 MON2Q7Z3U7 1717 aa27.5■■□□□ 1.99
SHKBP1-221ENST00000599833 ARHGEF10O15013 1369 aa27.48■■□□□ 1.99
SHKBP1-221ENST00000599833 NUTM2BA6NNL0 878 aaPredicted RBP27.48■■□□□ 1.99
SHKBP1-221ENST00000599833 NUTM2EB1AL46 878 aaPredicted RBP27.48■■□□□ 1.99
SHKBP1-221ENST00000599833 NUTM2AQ8IVF1 878 aaPredicted RBP27.48■■□□□ 1.99
SHKBP1-221ENST00000599833 PIK3C2AO00443 1686 aa27.45■■□□□ 1.98
SHKBP1-221ENST00000599833 MYOM1P52179 1685 aa27.45■■□□□ 1.98
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms