RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, human

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHKBP1-221	ENST00000599833	NBPF8	Q3BBV2	869 aa		28.16	■■■□□ 2.1
SHKBP1-221	ENST00000599833	ATF3	P18847	181 aa		28.13	■■■□□ 2.09
SHKBP1-221	ENST00000599833	HSPA1L	P34931	641 aa		28.13	■■■□□ 2.09
SHKBP1-221	ENST00000599833	SCAF1	Q9H7N4	1312 aa	Known RBP	28.13	■■■□□ 2.09
SHKBP1-221	ENST00000599833	TONSL	Q96HA7	1378 aa		28.12	■■■□□ 2.09
SHKBP1-221	ENST00000599833	ADGRB2	O60241	1585 aa		28.12	■■■□□ 2.09
SHKBP1-221	ENST00000599833	TRAK1	Q9UPV9	953 aa		28.12	■■■□□ 2.09
SHKBP1-221	ENST00000599833	FMN2	Q9NZ56	1722 aa		28.12	■■■□□ 2.09
SHKBP1-221	ENST00000599833	PRAM1	Q96QH2	718 aa		28.11	■■■□□ 2.09
SHKBP1-221	ENST00000599833	C1orf167	Q5SNV9	1468 aa		28.09	■■■□□ 2.09
SHKBP1-221	ENST00000599833	GPRASP1	Q5JY77	1395 aa		28.07	■■■□□ 2.08
SHKBP1-221	ENST00000599833	AHDC1	Q5TGY3	1603 aa	Predicted RBP	28.07	■■■□□ 2.08
SHKBP1-221	ENST00000599833	BRINP3	Q76B58	766 aa		28.06	■■■□□ 2.08
SHKBP1-221	ENST00000599833	RALGAPB	Q86X10	1494 aa		28.06	■■■□□ 2.08
SHKBP1-221	ENST00000599833	NHSL1	Q5SYE7	1610 aa		28.06	■■■□□ 2.08
SHKBP1-221	ENST00000599833	COL16A1	Q07092	1604 aa	Predicted RBP	28.04	■■■□□ 2.08
SHKBP1-221	ENST00000599833	USP32	Q8NFA0	1604 aa		28.03	■■■□□ 2.08
SHKBP1-221	ENST00000599833	PHLPP1	O60346	1717 aa		28.02	■■■□□ 2.08
SHKBP1-221	ENST00000599833	SAFB2	Q14151	953 aa	Known RBP eCLIP	28.02	■■■□□ 2.08
SHKBP1-221	ENST00000599833	RGPD8	O14715	1765 aa	Predicted RBP	28.01	■■■□□ 2.08
SHKBP1-221	ENST00000599833	POGK	Q9P215	609 aa		27.99	■■■□□ 2.07
SHKBP1-221	ENST00000599833	ROCK2	O75116	1388 aa	Known RBP	27.99	■■■□□ 2.07
SHKBP1-221	ENST00000599833	CCER1	Q8TC90	406 aa	Predicted RBP	27.97	■■■□□ 2.07
SHKBP1-221	ENST00000599833	ORAI2	Q96SN7	254 aa		27.97	■■■□□ 2.07
SHKBP1-221	ENST00000599833	QRICH2	Q9H0J4	1663 aa		27.97	■■■□□ 2.07
SHKBP1-221	ENST00000599833	TIMELESS	Q9UNS1	1208 aa		27.96	■■■□□ 2.07
SHKBP1-221	ENST00000599833	MINK1	Q8N4C8	1332 aa	Predicted RBP	27.94	■■■□□ 2.06
SHKBP1-221	ENST00000599833	HIRIP3	Q9BW71	556 aa	Predicted RBP	27.93	■■■□□ 2.06
SHKBP1-221	ENST00000599833	TULP4	Q9NRJ4	1543 aa		27.92	■■■□□ 2.06
SHKBP1-221	ENST00000599833	DDX17	Q92841	729 aa	Known RBP	27.91	■■■□□ 2.06
SHKBP1-221	ENST00000599833	ANKAR	Q7Z5J8	1434 aa		27.91	■■■□□ 2.06
SHKBP1-221	ENST00000599833	PRR36	Q9H6K5	1346 aa		27.91	■■■□□ 2.06
SHKBP1-221	ENST00000599833	NUTM2F	A1L443	756 aa		27.9	■■■□□ 2.06
SHKBP1-221	ENST00000599833	WASL	O00401	505 aa	Predicted RBP	27.89	■■■□□ 2.06
SHKBP1-221	ENST00000599833	CENPJ	Q9HC77	1338 aa	Predicted RBP	27.89	■■■□□ 2.05
SHKBP1-221	ENST00000599833	KIF1A	Q12756	1690 aa		27.88	■■■□□ 2.05
SHKBP1-221	ENST00000599833	ATP7B	P35670	1465 aa		27.88	■■■□□ 2.05
SHKBP1-221	ENST00000599833	TOPAZ1	Q8N9V7	1692 aa		27.87	■■■□□ 2.05
SHKBP1-221	ENST00000599833	PXDN	Q92626	1479 aa		27.86	■■■□□ 2.05
SHKBP1-221	ENST00000599833	SHPRH	Q149N8	1683 aa		27.85	■■■□□ 2.05
SHKBP1-221	ENST00000599833	ESCO1	Q5FWF5	840 aa		27.84	■■■□□ 2.05
SHKBP1-221	ENST00000599833	CARD11	Q9BXL7	1154 aa		27.84	■■■□□ 2.05
SHKBP1-221	ENST00000599833	SOS2	Q07890	1332 aa	Predicted RBP	27.84	■■■□□ 2.05
SHKBP1-221	ENST00000599833	MED1	Q15648	1581 aa	Predicted RBP	27.81	■■■□□ 2.04
SHKBP1-221	ENST00000599833	CDK19	Q9BWU1	502 aa		27.8	■■■□□ 2.04
SHKBP1-221	ENST00000599833	SBNO2	Q9Y2G9	1366 aa		27.8	■■■□□ 2.04
SHKBP1-221	ENST00000599833	ITSN1	Q15811	1721 aa		27.8	■■■□□ 2.04
SHKBP1-221	ENST00000599833	EIF3A	Q14152	1382 aa	Known RBP	27.79	■■■□□ 2.04
SHKBP1-221	ENST00000599833	JCAD	Q9P266	1359 aa		27.79	■■■□□ 2.04
SHKBP1-221	ENST00000599833	FOXO3	O43524	673 aa		27.76	■■■□□ 2.03
SHKBP1-221	ENST00000599833	PHF8	Q9UPP1	1060 aa		27.76	■■■□□ 2.03
SHKBP1-221	ENST00000599833	TRPM3	Q9HCF6	1732 aa	Predicted RBP	27.75	■■■□□ 2.03
SHKBP1-221	ENST00000599833	NPHP3	Q7Z494	1330 aa		27.74	■■■□□ 2.03
SHKBP1-221	ENST00000599833	NUDT16	Q96DE0	195 aa	Known RBP	27.74	■■■□□ 2.03
SHKBP1-221	ENST00000599833	COL22A1	Q8NFW1	1626 aa	Predicted RBP	27.74	■■■□□ 2.03
SHKBP1-221	ENST00000599833	PNPLA6	Q8IY17	1366 aa		27.73	■■■□□ 2.03
SHKBP1-221	ENST00000599833	LRP6	O75581	1613 aa		27.73	■■■□□ 2.03
SHKBP1-221	ENST00000599833	TESK2	Q96S53	571 aa		27.71	■■■□□ 2.03
SHKBP1-221	ENST00000599833	XPC	Q01831	940 aa	Predicted RBP	27.7	■■■□□ 2.02
SHKBP1-221	ENST00000599833	PMFBP1	Q8TBY8	1022 aa		27.7	■■■□□ 2.02
SHKBP1-221	ENST00000599833	LRRC59	Q96AG4	307 aa	Known RBP	27.7	■■■□□ 2.02
SHKBP1-221	ENST00000599833	CABP2	Q9NPB3	220 aa		27.69	■■■□□ 2.02
SHKBP1-221	ENST00000599833	POLR3A	O14802	1390 aa	Predicted RBP	27.68	■■■□□ 2.02
SHKBP1-221	ENST00000599833	USP47	Q96K76	1375 aa		27.68	■■■□□ 2.02
SHKBP1-221	ENST00000599833	ALS2	Q96Q42	1657 aa		27.66	■■■□□ 2.02
SHKBP1-221	ENST00000599833	ST20-MTHFS	A0A0A6YYL1	179 aa		27.66	■■■□□ 2.02
SHKBP1-221	ENST00000599833	CCDC61	Q9Y6R9	512 aa		27.66	■■■□□ 2.02
SHKBP1-221	ENST00000599833	EVC2	Q86UK5	1308 aa		27.66	■■■□□ 2.02
SHKBP1-221	ENST00000599833	PLEKHG3	A1L390	1219 aa		27.65	■■■□□ 2.02
SHKBP1-221	ENST00000599833	KRT28	Q7Z3Y7	464 aa		27.65	■■■□□ 2.02
SHKBP1-221	ENST00000599833	SPATA31A6	Q5VVP1	1343 aa		27.65	■■■□□ 2.02
SHKBP1-221	ENST00000599833	SPATA31A3	Q5VYP0	1347 aa		27.64	■■■□□ 2.01
SHKBP1-221	ENST00000599833	SBNO1	A3KN83	1393 aa		27.63	■■■□□ 2.01
SHKBP1-221	ENST00000599833	PPIP5K1	Q6PFW1	1433 aa		27.63	■■■□□ 2.01
SHKBP1-221	ENST00000599833	SRPK2	P78362	688 aa	Known RBP	27.62	■■■□□ 2.01
SHKBP1-221	ENST00000599833	TNS3	Q68CZ2	1445 aa		27.61	■■■□□ 2.01
SHKBP1-221	ENST00000599833	ABCA3	Q99758	1704 aa		27.59	■■■□□ 2.01
SHKBP1-221	ENST00000599833	ACE	P12821	1306 aa		27.59	■■■□□ 2.01
SHKBP1-221	ENST00000599833	CRYBG1	Q9Y4K1	1723 aa		27.58	■■■□□ 2.01
SHKBP1-221	ENST00000599833	AKAP12	Q02952	1782 aa		27.58	■■■□□ 2.01
SHKBP1-221	ENST00000599833	PSME1	Q06323	249 aa		27.56	■■■□□ 2
SHKBP1-221	ENST00000599833	DISP3	Q9P2K9	1392 aa		27.56	■■■□□ 2
SHKBP1-221	ENST00000599833	CABP1	Q9NZU7	370 aa		27.55	■■■□□ 2
SHKBP1-221	ENST00000599833	RGS17	Q9UGC6	210 aa	Predicted RBP	27.55	■■■□□ 2
SHKBP1-221	ENST00000599833	ATAD2	Q6PL18	1390 aa		27.55	■■■□□ 2
SHKBP1-221	ENST00000599833	CD163L1	Q9NR16	1453 aa		27.55	■■■□□ 2
SHKBP1-221	ENST00000599833	SSH2	Q76I76	1423 aa		27.54	■■■□□ 2
SHKBP1-221	ENST00000599833	NGDN	Q8NEJ9	315 aa	Known RBP	27.54	■■■□□ 2
SHKBP1-221	ENST00000599833	PUS7	Q96PZ0	661 aa	Known RBP	27.53	■■■□□ 2
SHKBP1-221	ENST00000599833	MARF1	Q9Y4F3	1742 aa	Known RBP	27.53	■■■□□ 2
SHKBP1-221	ENST00000599833	NRK	Q7Z2Y5	1582 aa		27.52	■■■□□ 2
SHKBP1-221	ENST00000599833	CPSF1	Q10570	1443 aa	Known RBP	27.52	■■■□□ 2
SHKBP1-221	ENST00000599833	USP6	P35125	1406 aa		27.5	■■□□□ 1.99
SHKBP1-221	ENST00000599833	MON2	Q7Z3U7	1717 aa		27.5	■■□□□ 1.99
SHKBP1-221	ENST00000599833	ARHGEF10	O15013	1369 aa		27.48	■■□□□ 1.99
SHKBP1-221	ENST00000599833	NUTM2B	A6NNL0	878 aa	Predicted RBP	27.48	■■□□□ 1.99
SHKBP1-221	ENST00000599833	NUTM2E	B1AL46	878 aa	Predicted RBP	27.48	■■□□□ 1.99
SHKBP1-221	ENST00000599833	NUTM2A	Q8IVF1	878 aa	Predicted RBP	27.48	■■□□□ 1.99
SHKBP1-221	ENST00000599833	PIK3C2A	O00443	1686 aa		27.45	■■□□□ 1.98
SHKBP1-221	ENST00000599833	MYOM1	P52179	1685 aa		27.45	■■□□□ 1.98

Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms