RNA–Protein interactions for RNA: ENST00000594806.5

TRIM28-204, Transcript of tripartite motif containing 28, humanhuman

TSL 5

Gene TRIM28, Length 861 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-204ENST00000594806 NBPF1Q3BBV0 1214 aa36.87■■■■□ 3.49
TRIM28-204ENST00000594806 POGKQ9P215 609 aa36.87■■■■□ 3.49
TRIM28-204ENST00000594806 PLEKHH1Q9ULM0 1364 aa36.87■■■■□ 3.49
TRIM28-204ENST00000594806 PRAM1Q96QH2 718 aa36.86■■■■□ 3.49
TRIM28-204ENST00000594806 CDC42BPGQ6DT37 1551 aa36.83■■■■□ 3.49
TRIM28-204ENST00000594806 MST1RQ04912 1400 aa36.82■■■■□ 3.48
TRIM28-204ENST00000594806 ROBO1Q9Y6N7 1651 aa36.81■■■■□ 3.48
TRIM28-204ENST00000594806 NBPF8Q3BBV2 869 aa36.81■■■■□ 3.48
TRIM28-204ENST00000594806 ARHGEF28Q8N1W1 1705 aaKnown RBP36.8■■■■□ 3.48
TRIM28-204ENST00000594806 ROCK2O75116 1388 aaKnown RBP36.78■■■■□ 3.48
TRIM28-204ENST00000594806 GPRASP1Q5JY77 1395 aa36.75■■■■□ 3.47
TRIM28-204ENST00000594806 HSPA1LP34931 641 aa36.73■■■■□ 3.47
TRIM28-204ENST00000594806 SAFB2Q14151 953 aaKnown RBP eCLIP36.73■■■■□ 3.47
TRIM28-204ENST00000594806 ADGRB2O60241 1585 aa36.72■■■■□ 3.47
TRIM28-204ENST00000594806 C1orf167Q5SNV9 1468 aa36.72■■■■□ 3.47
TRIM28-204ENST00000594806 RALGAPBQ86X10 1494 aa36.72■■■■□ 3.47
TRIM28-204ENST00000594806 BRINP3Q76B58 766 aa36.69■■■■□ 3.46
TRIM28-204ENST00000594806 FMN2Q9NZ56 1722 aa36.68■■■■□ 3.46
TRIM28-204ENST00000594806 EIF3AQ14152 1382 aaKnown RBP36.65■■■■□ 3.46
TRIM28-204ENST00000594806 CENPJQ9HC77 1338 aaPredicted RBP36.64■■■■□ 3.46
TRIM28-204ENST00000594806 MINK1Q8N4C8 1332 aaPredicted RBP36.63■■■■□ 3.45
TRIM28-204ENST00000594806 CARD11Q9BXL7 1154 aa36.63■■■■□ 3.45
TRIM28-204ENST00000594806 AHDC1Q5TGY3 1603 aaPredicted RBP36.62■■■■□ 3.45
TRIM28-204ENST00000594806 WASLO00401 505 aaPredicted RBP36.59■■■■□ 3.45
TRIM28-204ENST00000594806 PHLPP1O60346 1717 aa36.59■■■■□ 3.45
TRIM28-204ENST00000594806 HIRIP3Q9BW71 556 aaPredicted RBP36.58■■■■□ 3.45
TRIM28-204ENST00000594806 ANKARQ7Z5J8 1434 aa36.58■■■■□ 3.45
TRIM28-204ENST00000594806 ORAI2Q96SN7 254 aa36.57■■■■□ 3.44
TRIM28-204ENST00000594806 ESCO1Q5FWF5 840 aa36.56■■■■□ 3.44
TRIM28-204ENST00000594806 NHSL1Q5SYE7 1610 aa36.56■■■■□ 3.44
TRIM28-204ENST00000594806 QRICH2Q9H0J4 1663 aa36.54■■■■□ 3.44
TRIM28-204ENST00000594806 NUTM2FA1L443 756 aa36.53■■■■□ 3.44
TRIM28-204ENST00000594806 TULP4Q9NRJ4 1543 aa36.52■■■■□ 3.44
TRIM28-204ENST00000594806 COL16A1Q07092 1604 aaPredicted RBP36.5■■■■□ 3.43
TRIM28-204ENST00000594806 KIF1AQ12756 1690 aa36.5■■■■□ 3.43
TRIM28-204ENST00000594806 RGPD8O14715 1765 aaPredicted RBP36.5■■■■□ 3.43
TRIM28-204ENST00000594806 CDK19Q9BWU1 502 aa36.48■■■■□ 3.43
TRIM28-204ENST00000594806 NPHP3Q7Z494 1330 aa36.47■■■■□ 3.43
TRIM28-204ENST00000594806 USP32Q8NFA0 1604 aa36.46■■■■□ 3.43
TRIM28-204ENST00000594806 SBNO2Q9Y2G9 1366 aa36.46■■■■□ 3.43
TRIM28-204ENST00000594806 PHF8Q9UPP1 1060 aa36.44■■■■□ 3.42
TRIM28-204ENST00000594806 JCADQ9P266 1359 aa36.42■■■■□ 3.42
TRIM28-204ENST00000594806 SOS2Q07890 1332 aaPredicted RBP36.42■■■■□ 3.42
TRIM28-204ENST00000594806 LRRC59Q96AG4 307 aaKnown RBP36.42■■■■□ 3.42
TRIM28-204ENST00000594806 EVC2Q86UK5 1308 aa36.41■■■■□ 3.42
TRIM28-204ENST00000594806 ITSN1Q15811 1721 aa36.41■■■■□ 3.42
TRIM28-204ENST00000594806 PRR36Q9H6K5 1346 aa36.4■■■■□ 3.42
TRIM28-204ENST00000594806 SLC24A1O60721 1099 aa36.4■■■■□ 3.42
TRIM28-204ENST00000594806 NUDT16Q96DE0 195 aaKnown RBP36.4■■■■□ 3.42
TRIM28-204ENST00000594806 FOXO3O43524 673 aa36.39■■■■□ 3.42
TRIM28-204ENST00000594806 ATP7BP35670 1465 aa36.38■■■■□ 3.41
TRIM28-204ENST00000594806 DDX17Q92841 729 aaKnown RBP36.38■■■■□ 3.41
TRIM28-204ENST00000594806 SRPK2P78362 688 aaKnown RBP36.37■■■■□ 3.41
TRIM28-204ENST00000594806 CCDC61Q9Y6R9 512 aa36.37■■■■□ 3.41
TRIM28-204ENST00000594806 SHPRHQ149N8 1683 aa36.33■■■■□ 3.41
TRIM28-204ENST00000594806 PXDNQ92626 1479 aa36.32■■■■□ 3.41
TRIM28-204ENST00000594806 USP47Q96K76 1375 aa36.32■■■■□ 3.4
TRIM28-204ENST00000594806 PSME1Q06323 249 aa36.31■■■■□ 3.4
TRIM28-204ENST00000594806 ST20-MTHFSA0A0A6YYL1 179 aa36.3■■■■□ 3.4
TRIM28-204ENST00000594806 PMFBP1Q8TBY8 1022 aa36.3■■■■□ 3.4
TRIM28-204ENST00000594806 CABP2Q9NPB3 220 aa36.3■■■■□ 3.4
TRIM28-204ENST00000594806 SPATA31A6Q5VVP1 1343 aa36.3■■■■□ 3.4
TRIM28-204ENST00000594806 TOPAZ1Q8N9V7 1692 aa36.29■■■■□ 3.4
TRIM28-204ENST00000594806 PLEKHG3A1L390 1219 aa36.28■■■■□ 3.4
TRIM28-204ENST00000594806 KRT28Q7Z3Y7 464 aa36.28■■■■□ 3.4
TRIM28-204ENST00000594806 NGDNQ8NEJ9 315 aaKnown RBP36.26■■■■□ 3.4
TRIM28-204ENST00000594806 PUS7Q96PZ0 661 aaKnown RBP36.25■■■■□ 3.39
TRIM28-204ENST00000594806 TESK2Q96S53 571 aa36.24■■■■□ 3.39
TRIM28-204ENST00000594806 ATAD2Q6PL18 1390 aa36.24■■■■□ 3.39
TRIM28-204ENST00000594806 XPCQ01831 940 aaPredicted RBP36.23■■■■□ 3.39
TRIM28-204ENST00000594806 SBNO1A3KN83 1393 aa36.23■■■■□ 3.39
TRIM28-204ENST00000594806 PNPLA6Q8IY17 1366 aa36.23■■■■□ 3.39
TRIM28-204ENST00000594806 POLR3AO14802 1390 aaPredicted RBP36.22■■■■□ 3.39
TRIM28-204ENST00000594806 PPIP5K1Q6PFW1 1433 aa36.21■■■■□ 3.39
TRIM28-204ENST00000594806 MED1Q15648 1581 aaPredicted RBP36.2■■■■□ 3.39
TRIM28-204ENST00000594806 SPATA31A3Q5VYP0 1347 aa36.19■■■■□ 3.38
TRIM28-204ENST00000594806 ACEP12821 1306 aa36.16■■■■□ 3.38
TRIM28-204ENST00000594806 COL22A1Q8NFW1 1626 aaPredicted RBP36.16■■■■□ 3.38
TRIM28-204ENST00000594806 TNS3Q68CZ2 1445 aa36.15■■■■□ 3.38
TRIM28-204ENST00000594806 EIF4G2P78344 907 aaKnown RBP eCLIP36.14■■■■□ 3.38
TRIM28-204ENST00000594806 TMF1P82094 1093 aa36.14■■■■□ 3.38
TRIM28-204ENST00000594806 CABP1Q9NZU7 370 aa36.14■■■■□ 3.38
TRIM28-204ENST00000594806 ARHGEF10O15013 1369 aa36.13■■■■□ 3.37
TRIM28-204ENST00000594806 TRPM3Q9HCF6 1732 aaPredicted RBP36.12■■■■□ 3.37
TRIM28-204ENST00000594806 BRD4O60885 1362 aaPredicted RBP36.12■■■■□ 3.37
TRIM28-204ENST00000594806 CDCA8Q53HL2 280 aa36.1■■■■□ 3.37
TRIM28-204ENST00000594806 ZNF692Q9BU19 519 aaPredicted RBP36.08■■■■□ 3.37
TRIM28-204ENST00000594806 LRP6O75581 1613 aa36.05■■■■□ 3.36
TRIM28-204ENST00000594806 DISP3Q9P2K9 1392 aa36.04■■■■□ 3.36
TRIM28-204ENST00000594806 NINLQ9Y2I6 1382 aa36.04■■■■□ 3.36
TRIM28-204ENST00000594806 ALS2Q96Q42 1657 aa36.04■■■■□ 3.36
TRIM28-204ENST00000594806 NUTM2BA6NNL0 878 aaPredicted RBP36.04■■■■□ 3.36
TRIM28-204ENST00000594806 NUTM2EB1AL46 878 aaPredicted RBP36.04■■■■□ 3.36
TRIM28-204ENST00000594806 NUTM2AQ8IVF1 878 aaPredicted RBP36.04■■■■□ 3.36
TRIM28-204ENST00000594806 PAK3O75914 559 aaPredicted RBP36.02■■■■□ 3.36
TRIM28-204ENST00000594806 LMOD2Q6P5Q4 547 aa36.02■■■■□ 3.36
TRIM28-204ENST00000594806 HSPA5P11021 654 aaKnown RBP36.01■■■■□ 3.36
TRIM28-204ENST00000594806 MEX3CQ5U5Q3 659 aaKnown RBP36.01■■■■□ 3.36
TRIM28-204ENST00000594806 PHF23Q9BUL5 403 aaPredicted RBP36.01■■■■□ 3.36
TRIM28-204ENST00000594806 USP6P35125 1406 aa36■■■■□ 3.35
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms