RNA–Protein interactions for RNA: ENST00000590339.5

VPS25-205, Transcript of vacuolar protein sorting 25 homolog, humanhuman

TSL 2

Gene VPS25, Length 668 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS25-205ENST00000590339 NBPF1Q3BBV0 1214 aa13.08□□□□□ -0.32
VPS25-205ENST00000590339 TMEM132EQ6IEE7 984 aa13.08□□□□□ -0.32
VPS25-205ENST00000590339 BRINP3Q76B58 766 aa13.07□□□□□ -0.32
VPS25-205ENST00000590339 ADGRB1O14514 1584 aa13.07□□□□□ -0.32
VPS25-205ENST00000590339 NRXN3Q9Y4C0 1643 aa13.06□□□□□ -0.32
VPS25-205ENST00000590339 ST20-MTHFSA0A0A6YYL1 179 aa13.06□□□□□ -0.32
VPS25-205ENST00000590339 SOCS7O14512 581 aa13.06□□□□□ -0.32
VPS25-205ENST00000590339 ANP32CO43423 234 aa13.06□□□□□ -0.32
VPS25-205ENST00000590339 ROBO2Q9HCK4 1378 aa13.06□□□□□ -0.32
VPS25-205ENST00000590339 CENPBP07199 599 aaPredicted RBP13.05□□□□□ -0.32
VPS25-205ENST00000590339 WAPLQ7Z5K2 1190 aa13.05□□□□□ -0.32
VPS25-205ENST00000590339 DDX17Q92841 729 aaKnown RBP13.05□□□□□ -0.32
VPS25-205ENST00000590339 MED1Q15648 1581 aaPredicted RBP13.05□□□□□ -0.32
VPS25-205ENST00000590339 ROBO1Q9Y6N7 1651 aa13.05□□□□□ -0.32
VPS25-205ENST00000590339 TESK2Q96S53 571 aa13.04□□□□□ -0.32
VPS25-205ENST00000590339 MYOM1P52179 1685 aa13.04□□□□□ -0.32
VPS25-205ENST00000590339 CFAP70Q5T0N1 1121 aa13.03□□□□□ -0.32
VPS25-205ENST00000590339 RGS17Q9UGC6 210 aaPredicted RBP13.03□□□□□ -0.32
VPS25-205ENST00000590339 NUTM2FA1L443 756 aa13.02□□□□□ -0.33
VPS25-205ENST00000590339 NUTM2BA6NNL0 878 aaPredicted RBP13.02□□□□□ -0.33
VPS25-205ENST00000590339 NUTM2EB1AL46 878 aaPredicted RBP13.02□□□□□ -0.33
VPS25-205ENST00000590339 NUTM2AQ8IVF1 878 aaPredicted RBP13.02□□□□□ -0.33
VPS25-205ENST00000590339 ORAI2Q96SN7 254 aa13.02□□□□□ -0.33
VPS25-205ENST00000590339 JCADQ9P266 1359 aa13.02□□□□□ -0.33
VPS25-205ENST00000590339 ARHGEF28Q8N1W1 1705 aaKnown RBP13.02□□□□□ -0.33
VPS25-205ENST00000590339 EIF3AQ14152 1382 aaKnown RBP13.01□□□□□ -0.33
VPS25-205ENST00000590339 ASXL1Q8IXJ9 1541 aa13.01□□□□□ -0.33
VPS25-205ENST00000590339 SIPA1L2Q9P2F8 1722 aaPredicted RBP13.01□□□□□ -0.33
VPS25-205ENST00000590339 QRICH2Q9H0J4 1663 aa13□□□□□ -0.33
VPS25-205ENST00000590339 MST1RQ04912 1400 aa13□□□□□ -0.33
VPS25-205ENST00000590339 ADGRL3Q9HAR2 1447 aa13□□□□□ -0.33
VPS25-205ENST00000590339 SBNO2Q9Y2G9 1366 aa13□□□□□ -0.33
VPS25-205ENST00000590339 MEX3CQ5U5Q3 659 aaKnown RBP13□□□□□ -0.33
VPS25-205ENST00000590339 C14orf93Q9H972 538 aaKnown RBP13□□□□□ -0.33
VPS25-205ENST00000590339 SETD1AO15047 1707 aaKnown RBP12.99□□□□□ -0.33
VPS25-205ENST00000590339 XRN1Q8IZH2 1706 aaKnown RBP12.99□□□□□ -0.33
VPS25-205ENST00000590339 DCCP43146 1447 aa12.99□□□□□ -0.33
VPS25-205ENST00000590339 YTHDC1Q96MU7 727 aaKnown RBP12.99□□□□□ -0.33
VPS25-205ENST00000590339 SAFB2Q14151 953 aaKnown RBP eCLIP12.98□□□□□ -0.33
VPS25-205ENST00000590339 ESCO1Q5FWF5 840 aa12.98□□□□□ -0.33
VPS25-205ENST00000590339 LRRC59Q96AG4 307 aaKnown RBP12.98□□□□□ -0.33
VPS25-205ENST00000590339 PTCH1Q13635 1447 aa12.97□□□□□ -0.33
VPS25-205ENST00000590339 LRPPRCP42704 1394 aaKnown RBP12.97□□□□□ -0.33
VPS25-205ENST00000590339 PLEKHH1Q9ULM0 1364 aa12.97□□□□□ -0.33
VPS25-205ENST00000590339 POTEAQ6S8J7 498 aa12.97□□□□□ -0.33
VPS25-205ENST00000590339 PRKRIP1Q9H875 184 aaPredicted RBP12.97□□□□□ -0.33
VPS25-205ENST00000590339 ABCC11Q96J66 1382 aa12.96□□□□□ -0.33
VPS25-205ENST00000590339 C1orf167Q5SNV9 1468 aa12.96□□□□□ -0.34
VPS25-205ENST00000590339 PHLPP1O60346 1717 aa12.96□□□□□ -0.34
VPS25-205ENST00000590339 SPATA31A6Q5VVP1 1343 aa12.95□□□□□ -0.34
VPS25-205ENST00000590339 POGKQ9P215 609 aa12.95□□□□□ -0.34
VPS25-205ENST00000590339 TRAK1Q9UPV9 953 aa12.95□□□□□ -0.34
VPS25-205ENST00000590339 FOXO3O43524 673 aa12.94□□□□□ -0.34
VPS25-205ENST00000590339 XPCQ01831 940 aaPredicted RBP12.94□□□□□ -0.34
VPS25-205ENST00000590339 PRAM1Q96QH2 718 aa12.94□□□□□ -0.34
VPS25-205ENST00000590339 YTHDC2Q9H6S0 1430 aaKnown RBP12.94□□□□□ -0.34
VPS25-205ENST00000590339 KTN1Q86UP2 1357 aaKnown RBP12.94□□□□□ -0.34
VPS25-205ENST00000590339 TMF1P82094 1093 aa12.93□□□□□ -0.34
VPS25-205ENST00000590339 SIRT1Q96EB6 747 aa12.92□□□□□ -0.34
VPS25-205ENST00000590339 COL16A1Q07092 1604 aaPredicted RBP12.91□□□□□ -0.34
VPS25-205ENST00000590339 ADAMTS2O95450 1211 aa12.91□□□□□ -0.34
VPS25-205ENST00000590339 AHDC1Q5TGY3 1603 aaPredicted RBP12.91□□□□□ -0.34
VPS25-205ENST00000590339 KNDC1Q76NI1 1749 aa12.91□□□□□ -0.34
VPS25-205ENST00000590339 C8orf37Q96NL8 207 aa12.9□□□□□ -0.34
VPS25-205ENST00000590339 PARD3Q8TEW0 1356 aa12.9□□□□□ -0.34
VPS25-205ENST00000590339 NALCNQ8IZF0 1738 aa12.9□□□□□ -0.34
VPS25-205ENST00000590339 SOS2Q07890 1332 aaPredicted RBP12.89□□□□□ -0.35
VPS25-205ENST00000590339 TECPR2O15040 1411 aa12.89□□□□□ -0.35
VPS25-205ENST00000590339 DLC1Q96QB1 1528 aa12.89□□□□□ -0.35
VPS25-205ENST00000590339 TULP4Q9NRJ4 1543 aa12.89□□□□□ -0.35
VPS25-205ENST00000590339 LRP6O75581 1613 aa12.89□□□□□ -0.35
VPS25-205ENST00000590339 PLEKHG5O94827 1062 aa12.89□□□□□ -0.35
VPS25-205ENST00000590339 ZNF772Q68DY9 489 aaPredicted RBP12.89□□□□□ -0.35
VPS25-205ENST00000590339 POLR3GLQ9BT43 218 aa12.89□□□□□ -0.35
VPS25-205ENST00000590339 NPHP3Q7Z494 1330 aa12.88□□□□□ -0.35
VPS25-205ENST00000590339 MINK1Q8N4C8 1332 aaPredicted RBP12.88□□□□□ -0.35
VPS25-205ENST00000590339 SLC24A1O60721 1099 aa12.88□□□□□ -0.35
VPS25-205ENST00000590339 CDCA8Q53HL2 280 aa12.88□□□□□ -0.35
VPS25-205ENST00000590339 NGLY1Q96IV0 654 aa12.88□□□□□ -0.35
VPS25-205ENST00000590339 PNPLA6Q8IY17 1366 aa12.88□□□□□ -0.35
VPS25-205ENST00000590339 USP32Q8NFA0 1604 aa12.88□□□□□ -0.35
VPS25-205ENST00000590339 CENPJQ9HC77 1338 aaPredicted RBP12.88□□□□□ -0.35
VPS25-205ENST00000590339 PER1O15534 1290 aaPredicted RBP12.87□□□□□ -0.35
VPS25-205ENST00000590339 AFF2P51816 1311 aa12.87□□□□□ -0.35
VPS25-205ENST00000590339 KRT28Q7Z3Y7 464 aa12.86□□□□□ -0.35
VPS25-205ENST00000590339 PMFBP1Q8TBY8 1022 aa12.86□□□□□ -0.35
VPS25-205ENST00000590339 PHF8Q9UPP1 1060 aa12.86□□□□□ -0.35
VPS25-205ENST00000590339 PSME1Q06323 249 aa12.85□□□□□ -0.35
VPS25-205ENST00000590339 CCDC184Q52MB2 194 aa12.85□□□□□ -0.35
VPS25-205ENST00000590339 LMOD2Q6P5Q4 547 aa12.85□□□□□ -0.35
VPS25-205ENST00000590339 NPC1L1Q9UHC9 1359 aa12.84□□□□□ -0.35
VPS25-205ENST00000590339 RXRBP28702 533 aa12.84□□□□□ -0.35
VPS25-205ENST00000590339 RALBP1Q15311 655 aa12.84□□□□□ -0.35
VPS25-205ENST00000590339 BRD4O60885 1362 aaPredicted RBP12.83□□□□□ -0.36
VPS25-205ENST00000590339 QTRT2Q9H974 415 aaKnown RBP12.83□□□□□ -0.36
VPS25-205ENST00000590339 MYBBP1AQ9BQG0 1328 aaKnown RBP12.83□□□□□ -0.36
VPS25-205ENST00000590339 CDC42BPGQ6DT37 1551 aa12.82□□□□□ -0.36
VPS25-205ENST00000590339 WASLO00401 505 aaPredicted RBP12.82□□□□□ -0.36
VPS25-205ENST00000590339 MRS2Q9HD23 443 aa12.82□□□□□ -0.36
VPS25-205ENST00000590339 NHSL1Q5SYE7 1610 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 96 ms