RNA–Protein interactions for RNA: ENST00000564387.5

USB1-209, Transcript of U6 snRNA biogenesis phosphodiesterase 1, humanhuman

TSL 4

Gene USB1, Length 558 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USB1-209ENST00000564387 NBPF1Q3BBV0 1214 aa24.92■■□□□ 1.58
USB1-209ENST00000564387 PRAM1Q96QH2 718 aa24.9■■□□□ 1.58
USB1-209ENST00000564387 TONSLQ96HA7 1378 aa24.9■■□□□ 1.58
USB1-209ENST00000564387 TRPM1Q7Z4N2 1603 aa24.9■■□□□ 1.58
USB1-209ENST00000564387 TRAK1Q9UPV9 953 aa24.89■■□□□ 1.58
USB1-209ENST00000564387 C1orf167Q5SNV9 1468 aa24.89■■□□□ 1.57
USB1-209ENST00000564387 ARHGEF28Q8N1W1 1705 aaKnown RBP24.87■■□□□ 1.57
USB1-209ENST00000564387 NBPF8Q3BBV2 869 aa24.87■■□□□ 1.57
USB1-209ENST00000564387 BRINP3Q76B58 766 aa24.87■■□□□ 1.57
USB1-209ENST00000564387 ADGRB2O60241 1585 aa24.85■■□□□ 1.57
USB1-209ENST00000564387 AHDC1Q5TGY3 1603 aaPredicted RBP24.84■■□□□ 1.57
USB1-209ENST00000564387 POGKQ9P215 609 aa24.84■■□□□ 1.57
USB1-209ENST00000564387 GPRASP1Q5JY77 1395 aa24.83■■□□□ 1.57
USB1-209ENST00000564387 TIMELESSQ9UNS1 1208 aa24.83■■□□□ 1.57
USB1-209ENST00000564387 FMN2Q9NZ56 1722 aa24.82■■□□□ 1.56
USB1-209ENST00000564387 COL16A1Q07092 1604 aaPredicted RBP24.79■■□□□ 1.56
USB1-209ENST00000564387 NHSL1Q5SYE7 1610 aa24.79■■□□□ 1.56
USB1-209ENST00000564387 SAFB2Q14151 953 aaKnown RBP eCLIP24.78■■□□□ 1.56
USB1-209ENST00000564387 PHLPP1O60346 1717 aa24.78■■□□□ 1.56
USB1-209ENST00000564387 ORAI2Q96SN7 254 aa24.77■■□□□ 1.56
USB1-209ENST00000564387 ROCK2O75116 1388 aaKnown RBP24.77■■□□□ 1.56
USB1-209ENST00000564387 RALGAPBQ86X10 1494 aa24.77■■□□□ 1.56
USB1-209ENST00000564387 CCER1Q8TC90 406 aaPredicted RBP24.74■■□□□ 1.55
USB1-209ENST00000564387 ANKARQ7Z5J8 1434 aa24.73■■□□□ 1.55
USB1-209ENST00000564387 MINK1Q8N4C8 1332 aaPredicted RBP24.73■■□□□ 1.55
USB1-209ENST00000564387 WASLO00401 505 aaPredicted RBP24.72■■□□□ 1.55
USB1-209ENST00000564387 USP32Q8NFA0 1604 aa24.72■■□□□ 1.55
USB1-209ENST00000564387 HIRIP3Q9BW71 556 aaPredicted RBP24.71■■□□□ 1.55
USB1-209ENST00000564387 CENPJQ9HC77 1338 aaPredicted RBP24.7■■□□□ 1.54
USB1-209ENST00000564387 ESCO1Q5FWF5 840 aa24.7■■□□□ 1.54
USB1-209ENST00000564387 EIF3AQ14152 1382 aaKnown RBP24.69■■□□□ 1.54
USB1-209ENST00000564387 SOS2Q07890 1332 aaPredicted RBP24.69■■□□□ 1.54
USB1-209ENST00000564387 TULP4Q9NRJ4 1543 aa24.69■■□□□ 1.54
USB1-209ENST00000564387 RGPD8O14715 1765 aaPredicted RBP24.68■■□□□ 1.54
USB1-209ENST00000564387 NUTM2FA1L443 756 aa24.68■■□□□ 1.54
USB1-209ENST00000564387 JCADQ9P266 1359 aa24.67■■□□□ 1.54
USB1-209ENST00000564387 KIF1AQ12756 1690 aa24.67■■□□□ 1.54
USB1-209ENST00000564387 DDX17Q92841 729 aaKnown RBP24.67■■□□□ 1.54
USB1-209ENST00000564387 PRR36Q9H6K5 1346 aa24.66■■□□□ 1.54
USB1-209ENST00000564387 QRICH2Q9H0J4 1663 aa24.66■■□□□ 1.54
USB1-209ENST00000564387 NPHP3Q7Z494 1330 aa24.65■■□□□ 1.54
USB1-209ENST00000564387 CARD11Q9BXL7 1154 aa24.65■■□□□ 1.54
USB1-209ENST00000564387 PXDNQ92626 1479 aa24.64■■□□□ 1.54
USB1-209ENST00000564387 LRRC59Q96AG4 307 aaKnown RBP24.64■■□□□ 1.54
USB1-209ENST00000564387 SHPRHQ149N8 1683 aa24.64■■□□□ 1.53
USB1-209ENST00000564387 CDK19Q9BWU1 502 aa24.63■■□□□ 1.53
USB1-209ENST00000564387 PHF8Q9UPP1 1060 aa24.63■■□□□ 1.53
USB1-209ENST00000564387 ATP7BP35670 1465 aa24.63■■□□□ 1.53
USB1-209ENST00000564387 FOXO3O43524 673 aa24.62■■□□□ 1.53
USB1-209ENST00000564387 SBNO2Q9Y2G9 1366 aa24.62■■□□□ 1.53
USB1-209ENST00000564387 MED1Q15648 1581 aaPredicted RBP24.61■■□□□ 1.53
USB1-209ENST00000564387 NUDT16Q96DE0 195 aaKnown RBP24.59■■□□□ 1.53
USB1-209ENST00000564387 SPATA31A6Q5VVP1 1343 aa24.59■■□□□ 1.53
USB1-209ENST00000564387 TOPAZ1Q8N9V7 1692 aa24.56■■□□□ 1.52
USB1-209ENST00000564387 PNPLA6Q8IY17 1366 aa24.56■■□□□ 1.52
USB1-209ENST00000564387 ITSN1Q15811 1721 aa24.56■■□□□ 1.52
USB1-209ENST00000564387 CCDC61Q9Y6R9 512 aa24.55■■□□□ 1.52
USB1-209ENST00000564387 EVC2Q86UK5 1308 aa24.54■■□□□ 1.52
USB1-209ENST00000564387 PLEKHG3A1L390 1219 aa24.53■■□□□ 1.52
USB1-209ENST00000564387 KRT28Q7Z3Y7 464 aa24.53■■□□□ 1.52
USB1-209ENST00000564387 PMFBP1Q8TBY8 1022 aa24.52■■□□□ 1.52
USB1-209ENST00000564387 COL22A1Q8NFW1 1626 aaPredicted RBP24.52■■□□□ 1.52
USB1-209ENST00000564387 SBNO1A3KN83 1393 aa24.52■■□□□ 1.52
USB1-209ENST00000564387 POLR3AO14802 1390 aaPredicted RBP24.52■■□□□ 1.52
USB1-209ENST00000564387 XPCQ01831 940 aaPredicted RBP24.51■■□□□ 1.51
USB1-209ENST00000564387 SPATA31A3Q5VYP0 1347 aa24.51■■□□□ 1.51
USB1-209ENST00000564387 LRP6O75581 1613 aa24.5■■□□□ 1.51
USB1-209ENST00000564387 SRPK2P78362 688 aaKnown RBP24.5■■□□□ 1.51
USB1-209ENST00000564387 TESK2Q96S53 571 aa24.5■■□□□ 1.51
USB1-209ENST00000564387 CABP2Q9NPB3 220 aa24.5■■□□□ 1.51
USB1-209ENST00000564387 PSME1Q06323 249 aa24.49■■□□□ 1.51
USB1-209ENST00000564387 TRPM3Q9HCF6 1732 aaPredicted RBP24.48■■□□□ 1.51
USB1-209ENST00000564387 DISP3Q9P2K9 1392 aa24.48■■□□□ 1.51
USB1-209ENST00000564387 ST20-MTHFSA0A0A6YYL1 179 aa24.47■■□□□ 1.51
USB1-209ENST00000564387 TNS3Q68CZ2 1445 aa24.46■■□□□ 1.51
USB1-209ENST00000564387 USP47Q96K76 1375 aa24.46■■□□□ 1.51
USB1-209ENST00000564387 PUS7Q96PZ0 661 aaKnown RBP24.46■■□□□ 1.51
USB1-209ENST00000564387 PPIP5K1Q6PFW1 1433 aa24.45■■□□□ 1.51
USB1-209ENST00000564387 ACEP12821 1306 aa24.45■■□□□ 1.5
USB1-209ENST00000564387 SLC24A1O60721 1099 aa24.45■■□□□ 1.5
USB1-209ENST00000564387 NGDNQ8NEJ9 315 aaKnown RBP24.45■■□□□ 1.5
USB1-209ENST00000564387 ATAD2Q6PL18 1390 aa24.42■■□□□ 1.5
USB1-209ENST00000564387 ALS2Q96Q42 1657 aa24.42■■□□□ 1.5
USB1-209ENST00000564387 CABP1Q9NZU7 370 aa24.41■■□□□ 1.5
USB1-209ENST00000564387 RGS17Q9UGC6 210 aaPredicted RBP24.41■■□□□ 1.5
USB1-209ENST00000564387 ARHGEF10O15013 1369 aa24.41■■□□□ 1.5
USB1-209ENST00000564387 BRD4O60885 1362 aaPredicted RBP24.39■■□□□ 1.49
USB1-209ENST00000564387 NUTM2BA6NNL0 878 aaPredicted RBP24.38■■□□□ 1.49
USB1-209ENST00000564387 NUTM2EB1AL46 878 aaPredicted RBP24.38■■□□□ 1.49
USB1-209ENST00000564387 NUTM2AQ8IVF1 878 aaPredicted RBP24.38■■□□□ 1.49
USB1-209ENST00000564387 CPSF1Q10570 1443 aaKnown RBP24.35■■□□□ 1.49
USB1-209ENST00000564387 SSH2Q76I76 1423 aa24.35■■□□□ 1.49
USB1-209ENST00000564387 PHF23Q9BUL5 403 aaPredicted RBP24.35■■□□□ 1.49
USB1-209ENST00000564387 USP6P35125 1406 aa24.34■■□□□ 1.49
USB1-209ENST00000564387 ZNF692Q9BU19 519 aaPredicted RBP24.33■■□□□ 1.49
USB1-209ENST00000564387 AKAP12Q02952 1782 aa24.32■■□□□ 1.48
USB1-209ENST00000564387 MEX3CQ5U5Q3 659 aaKnown RBP24.32■■□□□ 1.48
USB1-209ENST00000564387 TMF1P82094 1093 aa24.31■■□□□ 1.48
USB1-209ENST00000564387 ABCA3Q99758 1704 aa24.31■■□□□ 1.48
USB1-209ENST00000564387 MARF1Q9Y4F3 1742 aaKnown RBP24.31■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms