RNA–Protein interactions for RNA: ENST00000561431.1

LRRC28-222, Transcript of leucine rich repeat containing 28, humanhuman

TSL 3

Gene LRRC28, Length 754 nt, Biotype processed transcript, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-222ENST00000561431 AK7Q96M32 723 aa8.18□□□□□ -1.1
LRRC28-222ENST00000561431 OATP04181 439 aa8.17□□□□□ -1.1
LRRC28-222ENST00000561431 SNRPBP14678 240 aaKnown RBP8.17□□□□□ -1.1
LRRC28-222ENST00000561431 RSPH4AQ5TD94 716 aa8.17□□□□□ -1.1
LRRC28-222ENST00000561431 TTC24A2A3L6 582 aaPredicted RBP8.16□□□□□ -1.1
LRRC28-222ENST00000561431 SMPD1P17405 629 aa8.16□□□□□ -1.1
LRRC28-222ENST00000561431 METTL3Q86U44 580 aaKnown RBP8.16□□□□□ -1.1
LRRC28-222ENST00000561431 ATP13A2Q9NQ11 1180 aa8.16□□□□□ -1.1
LRRC28-222ENST00000561431 PRDM9Q9NQV7 894 aa8.16□□□□□ -1.1
LRRC28-222ENST00000561431 TERTO14746 1132 aaKnown RBP8.15□□□□□ -1.1
LRRC28-222ENST00000561431 FUT2Q10981 343 aa8.15□□□□□ -1.1
LRRC28-222ENST00000561431 GNPATO15228 680 aa8.14□□□□□ -1.11
LRRC28-222ENST00000561431 FMNL1O95466 1100 aaPredicted RBP8.14□□□□□ -1.11
LRRC28-222ENST00000561431 HIC1Q14526 733 aa8.14□□□□□ -1.11
LRRC28-222ENST00000561431 SLC27A5Q9Y2P5 690 aa8.14□□□□□ -1.11
LRRC28-222ENST00000561431 WNT7AO00755 349 aa8.13□□□□□ -1.11
LRRC28-222ENST00000561431 ATP6V1AP38606 617 aa8.13□□□□□ -1.11
LRRC28-222ENST00000561431 BRPF1P55201 1214 aaPredicted RBP8.13□□□□□ -1.11
LRRC28-222ENST00000561431 TRIM47Q96LD4 638 aa8.13□□□□□ -1.11
LRRC28-222ENST00000561431 MINK1Q8N4C8 1332 aaPredicted RBP8.12□□□□□ -1.11
LRRC28-222ENST00000561431 SNIP1Q8TAD8 396 aaKnown RBP8.12□□□□□ -1.11
LRRC28-222ENST00000561431 SALL2Q9Y467 1007 aaPredicted RBP8.12□□□□□ -1.11
LRRC28-222ENST00000561431 ZBTB24O43167 697 aaPredicted RBP8.11□□□□□ -1.11
LRRC28-222ENST00000561431 BRICD5Q6PL45 260 aa8.11□□□□□ -1.11
LRRC28-222ENST00000561431 RDH13Q8NBN7 331 aa8.11□□□□□ -1.11
LRRC28-222ENST00000561431 J3QL48 77 aa8.1□□□□□ -1.11
LRRC28-222ENST00000561431 GPR37O15354 613 aa8.1□□□□□ -1.11
LRRC28-222ENST00000561431 MAP2K5Q13163 448 aa8.1□□□□□ -1.11
LRRC28-222ENST00000561431 SENP2Q9HC62 589 aa8.1□□□□□ -1.11
LRRC28-222ENST00000561431 DAXXQ9UER7 740 aaPredicted RBP8.1□□□□□ -1.11
LRRC28-222ENST00000561431 DDX11L8A8MPP1 907 aa8.09□□□□□ -1.11
LRRC28-222ENST00000561431 MSS51Q4VC12 460 aa8.09□□□□□ -1.11
LRRC28-222ENST00000561431 MRGPRX2Q96LB1 330 aa8.09□□□□□ -1.11
LRRC28-222ENST00000561431 IRF6O14896 467 aa8.08□□□□□ -1.12
LRRC28-222ENST00000561431 TRIM66O15016 1216 aa8.08□□□□□ -1.12
LRRC28-222ENST00000561431 GCGRP47871 477 aa8.08□□□□□ -1.12
LRRC28-222ENST00000561431 TRIM32Q13049 653 aa8.08□□□□□ -1.12
LRRC28-222ENST00000561431 TMEM132AQ24JP5 1023 aa8.08□□□□□ -1.12
LRRC28-222ENST00000561431 RNF19BQ6ZMZ0 732 aa8.08□□□□□ -1.12
LRRC28-222ENST00000561431 CCDC102AQ96A19 550 aa8.08□□□□□ -1.12
LRRC28-222ENST00000561431 FECHP22830 423 aa8.07□□□□□ -1.12
LRRC28-222ENST00000561431 PDE4DQ08499 809 aa8.07□□□□□ -1.12
LRRC28-222ENST00000561431 HPS1Q92902 700 aa8.07□□□□□ -1.12
LRRC28-222ENST00000561431 NLRP7Q8WX94 980 aa8.06□□□□□ -1.12
LRRC28-222ENST00000561431 GPBP1L1Q9HC44 474 aaPredicted RBP8.06□□□□□ -1.12
LRRC28-222ENST00000561431 KIFC2Q96AC6 838 aa8.05□□□□□ -1.12
LRRC28-222ENST00000561431 LOC100996750A0A140TA64 210 aa8.04□□□□□ -1.12
LRRC28-222ENST00000561431 LORP23490 312 aaPredicted RBP8.04□□□□□ -1.12
LRRC28-222ENST00000561431 MMP16P51512 607 aa8.04□□□□□ -1.12
LRRC28-222ENST00000561431 TTLL12Q14166 644 aaPredicted RBP8.04□□□□□ -1.12
LRRC28-222ENST00000561431 KRTAP4-6Q9BYQ5 205 aa8.04□□□□□ -1.12
LRRC28-222ENST00000561431 KDM4CQ9H3R0 1056 aa8.03□□□□□ -1.12
LRRC28-222ENST00000561431 SULF1Q8IWU6 871 aa8.02□□□□□ -1.13
LRRC28-222ENST00000561431 REPIN1Q9BWE0 567 aaKnown RBP8.02□□□□□ -1.13
LRRC28-222ENST00000561431 FAM181BA6NEQ2 426 aa8.01□□□□□ -1.13
LRRC28-222ENST00000561431 IL27Q8NEV9 243 aa8.01□□□□□ -1.13
LRRC28-222ENST00000561431 PHOX2BQ99453 314 aa8.01□□□□□ -1.13
LRRC28-222ENST00000561431 GMPRP36959 345 aa8□□□□□ -1.13
LRRC28-222ENST00000561431 SKOR1P84550 965 aa8□□□□□ -1.13
LRRC28-222ENST00000561431 SLC16A10Q8TF71 515 aa8□□□□□ -1.13
LRRC28-222ENST00000561431 NXF1Q9UBU9 619 aaKnown RBP8□□□□□ -1.13
LRRC28-222ENST00000561431 DXOO77932 396 aaKnown RBP7.99□□□□□ -1.13
LRRC28-222ENST00000561431 RC3H1Q5TC82 1133 aaKnown RBP7.99□□□□□ -1.13
LRRC28-222ENST00000561431 ZSCAN1Q8NBB4 408 aa7.99□□□□□ -1.13
LRRC28-222ENST00000561431 GTF3C3Q9Y5Q9 886 aa7.99□□□□□ -1.13
LRRC28-222ENST00000561431 Q3C1V9 767 aa7.98□□□□□ -1.13
LRRC28-222ENST00000561431 GRIPAP1Q4V328 841 aa7.98□□□□□ -1.13
LRRC28-222ENST00000561431 AMHR2Q16671 573 aa7.97□□□□□ -1.13
LRRC28-222ENST00000561431 WNT7BP56706 349 aa7.96□□□□□ -1.14
LRRC28-222ENST00000561431 MDM2Q00987 491 aaPredicted RBP7.96□□□□□ -1.14
LRRC28-222ENST00000561431 PARP9Q8IXQ6 854 aa7.96□□□□□ -1.14
LRRC28-222ENST00000561431 IRF7Q92985 503 aa7.96□□□□□ -1.14
LRRC28-222ENST00000561431 USB1Q9BQ65 265 aaKnown RBP7.96□□□□□ -1.14
LRRC28-222ENST00000561431 ALDH1A1P00352 501 aa7.95□□□□□ -1.14
LRRC28-222ENST00000561431 BMP1P13497 986 aa7.95□□□□□ -1.14
LRRC28-222ENST00000561431 CLCN1P35523 988 aa7.95□□□□□ -1.14
LRRC28-222ENST00000561431 TRIM46Q7Z4K8 759 aa7.95□□□□□ -1.14
LRRC28-222ENST00000561431 NPAS3Q8IXF0 933 aa7.95□□□□□ -1.14
LRRC28-222ENST00000561431 VEGFBP49765 207 aa7.94□□□□□ -1.14
LRRC28-222ENST00000561431 GIGYF2Q6Y7W6 1299 aaKnown RBP7.94□□□□□ -1.14
LRRC28-222ENST00000561431 CCDC24Q8N4L8 307 aa7.94□□□□□ -1.14
LRRC28-222ENST00000561431 DDRGK1Q96HY6 314 aa7.94□□□□□ -1.14
LRRC28-222ENST00000561431 FAM117AQ9C073 453 aa7.93□□□□□ -1.14
LRRC28-222ENST00000561431 ATP1B4Q9UN42 357 aaPredicted RBP7.93□□□□□ -1.14
LRRC28-222ENST00000561431 ERBB4Q15303 1308 aa7.93□□□□□ -1.14
LRRC28-222ENST00000561431 H3BM21 787 aa7.92□□□□□ -1.14
LRRC28-222ENST00000561431 GPCPD1Q9NPB8 672 aa7.92□□□□□ -1.14
LRRC28-222ENST00000561431 SIAH2O43255 324 aa7.91□□□□□ -1.14
LRRC28-222ENST00000561431 CD46P15529 392 aa7.91□□□□□ -1.14
LRRC28-222ENST00000561431 HLA-CQ95604 372 aa7.91□□□□□ -1.14
LRRC28-222ENST00000561431 CAPN5O15484 640 aaPredicted RBP7.9□□□□□ -1.14
LRRC28-222ENST00000561431 KDM4AO75164 1064 aa7.89□□□□□ -1.15
LRRC28-222ENST00000561431 SSTR3P32745 418 aaPredicted RBP7.89□□□□□ -1.15
LRRC28-222ENST00000561431 EHBP1Q8NDI1 1231 aa7.87□□□□□ -1.15
LRRC28-222ENST00000561431 MS4A1P11836 297 aa7.86□□□□□ -1.15
LRRC28-222ENST00000561431 JUNDP17535 347 aa7.86□□□□□ -1.15
LRRC28-222ENST00000561431 SUZ12Q15022 739 aaKnown RBP7.86□□□□□ -1.15
LRRC28-222ENST00000561431 PTCRAQ6ISU1 281 aaPredicted RBP7.86□□□□□ -1.15
LRRC28-222ENST00000561431 ERICH6Q7L0X2 663 aa7.86□□□□□ -1.15
LRRC28-222ENST00000561431 ZFP42Q96MM3 310 aa7.86□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms