RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 NEXMIFQ5QGS0 1516 aa17.55■□□□□ 0.4
SHMT2-222ENST00000555774 IQSEC2Q5JU85 1478 aa17.54■□□□□ 0.4
SHMT2-222ENST00000555774 OSCARQ8IYS5 282 aa17.54■□□□□ 0.4
SHMT2-222ENST00000555774 VGFO15240 615 aaPredicted RBP17.54■□□□□ 0.4
SHMT2-222ENST00000555774 PDE3AQ14432 1141 aa17.54■□□□□ 0.4
SHMT2-222ENST00000555774 ZFYVE9O95405 1425 aa17.54■□□□□ 0.4
SHMT2-222ENST00000555774 DIP2CQ9Y2E4 1556 aa17.54■□□□□ 0.4
SHMT2-222ENST00000555774 CGNL1Q0VF96 1302 aa17.54■□□□□ 0.4
SHMT2-222ENST00000555774 NBR1Q14596 966 aa17.53■□□□□ 0.4
SHMT2-222ENST00000555774 RTL5Q5HYW3 569 aaPredicted RBP17.53■□□□□ 0.4
SHMT2-222ENST00000555774 DEKP35659 375 aaKnown RBP17.53■□□□□ 0.4
SHMT2-222ENST00000555774 WWC1Q8IX03 1113 aa17.53■□□□□ 0.4
SHMT2-222ENST00000555774 RUNDC1Q96C34 613 aa17.53■□□□□ 0.4
SHMT2-222ENST00000555774 EVC2Q86UK5 1308 aa17.52■□□□□ 0.4
SHMT2-222ENST00000555774 ARHGEF28Q8N1W1 1705 aaKnown RBP17.52■□□□□ 0.4
SHMT2-222ENST00000555774 SIGLEC1Q9BZZ2 1709 aa17.52■□□□□ 0.39
SHMT2-222ENST00000555774 ANKRD36BQ8N2N9 1353 aa17.52■□□□□ 0.39
SHMT2-222ENST00000555774 FAM161AQ3B820 660 aa17.51■□□□□ 0.39
SHMT2-222ENST00000555774 CFAP53Q96M91 514 aa17.51■□□□□ 0.39
SHMT2-222ENST00000555774 SLC12A5Q9H2X9 1139 aa17.51■□□□□ 0.39
SHMT2-222ENST00000555774 TULP4Q9NRJ4 1543 aa17.51■□□□□ 0.39
SHMT2-222ENST00000555774 PHF23Q9BUL5 403 aaPredicted RBP17.5■□□□□ 0.39
SHMT2-222ENST00000555774 AAMPQ13685 434 aa17.49■□□□□ 0.39
SHMT2-222ENST00000555774 CCDC27Q2M243 656 aa17.49■□□□□ 0.39
SHMT2-222ENST00000555774 WDR63Q8IWG1 891 aa17.49■□□□□ 0.39
SHMT2-222ENST00000555774 USP35Q9P2H5 1018 aa17.49■□□□□ 0.39
SHMT2-222ENST00000555774 PPM1GO15355 546 aaPredicted RBP17.48■□□□□ 0.39
SHMT2-222ENST00000555774 BCAR3O75815 825 aa17.48■□□□□ 0.39
SHMT2-222ENST00000555774 TMEM132EQ6IEE7 984 aa17.48■□□□□ 0.39
SHMT2-222ENST00000555774 DMRT2Q9Y5R5 561 aa17.48■□□□□ 0.39
SHMT2-222ENST00000555774 SLC52A1Q9NWF4 448 aa17.47■□□□□ 0.39
SHMT2-222ENST00000555774 RICTORQ6R327 1708 aa17.46■□□□□ 0.39
SHMT2-222ENST00000555774 SKAP1Q86WV1 359 aa17.46■□□□□ 0.38
SHMT2-222ENST00000555774 C8orf34Q49A92 452 aa17.45■□□□□ 0.38
SHMT2-222ENST00000555774 MTHFSP49914 203 aa17.44■□□□□ 0.38
SHMT2-222ENST00000555774 TCP11L2Q8N4U5 519 aa17.44■□□□□ 0.38
SHMT2-222ENST00000555774 CFAP65Q6ZU64 1925 aaKnown RBP17.43■□□□□ 0.38
SHMT2-222ENST00000555774 ADGRB2O60241 1585 aa17.43■□□□□ 0.38
SHMT2-222ENST00000555774 RAPGEF3O95398 923 aa17.42■□□□□ 0.38
SHMT2-222ENST00000555774 CANXP27824 592 aaKnown RBP17.42■□□□□ 0.38
SHMT2-222ENST00000555774 CLUAP1Q96AJ1 413 aa17.42■□□□□ 0.38
SHMT2-222ENST00000555774 ABCC11Q96J66 1382 aa17.42■□□□□ 0.38
SHMT2-222ENST00000555774 RARSP54136 660 aaKnown RBP17.41■□□□□ 0.38
SHMT2-222ENST00000555774 MED14O60244 1454 aa17.41■□□□□ 0.38
SHMT2-222ENST00000555774 MAPK8IP3Q9UPT6 1336 aa17.41■□□□□ 0.38
SHMT2-222ENST00000555774 TNNT2P45379 298 aaPredicted RBP17.41■□□□□ 0.38
SHMT2-222ENST00000555774 ATAD2Q6PL18 1390 aa17.4■□□□□ 0.38
SHMT2-222ENST00000555774 MYH16Q9H6N6 1097 aa17.4■□□□□ 0.38
SHMT2-222ENST00000555774 CLTCQ00610 1675 aaKnown RBP17.4■□□□□ 0.38
SHMT2-222ENST00000555774 PREX1Q8TCU6 1659 aa17.4■□□□□ 0.38
SHMT2-222ENST00000555774 TMEM131LA2VDJ0 1609 aa17.4■□□□□ 0.38
SHMT2-222ENST00000555774 ZMYM3Q14202 1370 aa17.4■□□□□ 0.38
SHMT2-222ENST00000555774 IDI1Q13907 227 aa17.39■□□□□ 0.38
SHMT2-222ENST00000555774 CT47B1P0C2W7 299 aaPredicted RBP17.38■□□□□ 0.37
SHMT2-222ENST00000555774 PTPRMP28827 1452 aa17.38■□□□□ 0.37
SHMT2-222ENST00000555774 PMFBP1Q8TBY8 1022 aa17.38■□□□□ 0.37
SHMT2-222ENST00000555774 A0A1W2PP64 1363 aa17.37■□□□□ 0.37
SHMT2-222ENST00000555774 IGHDP01880 384 aa17.37■□□□□ 0.37
SHMT2-222ENST00000555774 RGS3P49796 1198 aa17.37■□□□□ 0.37
SHMT2-222ENST00000555774 CABP2Q9NPB3 220 aa17.37■□□□□ 0.37
SHMT2-222ENST00000555774 RRP7AQ9Y3A4 280 aaKnown RBP17.37■□□□□ 0.37
SHMT2-222ENST00000555774 ANKRD26Q9UPS8 1709 aa17.36■□□□□ 0.37
SHMT2-222ENST00000555774 NEFMP07197 916 aa17.36■□□□□ 0.37
SHMT2-222ENST00000555774 YEATS2Q9ULM3 1422 aa17.36■□□□□ 0.37
SHMT2-222ENST00000555774 VIRMAQ69YN4 1812 aaKnown RBP17.36■□□□□ 0.37
SHMT2-222ENST00000555774 NEUROD2Q15784 382 aa17.36■□□□□ 0.37
SHMT2-222ENST00000555774 PANK1Q8TE04 598 aa17.36■□□□□ 0.37
SHMT2-222ENST00000555774 DAXXQ9UER7 740 aaPredicted RBP17.36■□□□□ 0.37
SHMT2-222ENST00000555774 COG6Q9Y2V7 657 aa17.36■□□□□ 0.37
SHMT2-222ENST00000555774 LAS1LQ9Y4W2 734 aaKnown RBP17.36■□□□□ 0.37
SHMT2-222ENST00000555774 COL3A1P02461 1466 aaPredicted RBP17.35■□□□□ 0.37
SHMT2-222ENST00000555774 U2AF1L5P0DN76 240 aaPredicted RBP17.35■□□□□ 0.37
SHMT2-222ENST00000555774 U2AF1Q01081 240 aaKnown RBP eCLIP17.35■□□□□ 0.37
SHMT2-222ENST00000555774 NUTM2DQ5VT03 806 aaPredicted RBP17.35■□□□□ 0.37
SHMT2-222ENST00000555774 YTHDC2Q9H6S0 1430 aaKnown RBP17.34■□□□□ 0.37
SHMT2-222ENST00000555774 TERF2IPQ9NYB0 399 aa17.34■□□□□ 0.37
SHMT2-222ENST00000555774 FRAT1Q92837 279 aaPredicted RBP17.33■□□□□ 0.36
SHMT2-222ENST00000555774 SRPK2P78362 688 aaKnown RBP17.32■□□□□ 0.36
SHMT2-222ENST00000555774 NLRP1Q9C000 1473 aa17.32■□□□□ 0.36
SHMT2-222ENST00000555774 REREQ9P2R6 1566 aa17.31■□□□□ 0.36
SHMT2-222ENST00000555774 CD163L1Q9NR16 1453 aa17.31■□□□□ 0.36
SHMT2-222ENST00000555774 MYO5BQ9ULV0 1848 aa17.31■□□□□ 0.36
SHMT2-222ENST00000555774 IL16Q14005 1332 aa17.31■□□□□ 0.36
SHMT2-222ENST00000555774 PLEKHF1Q96S99 279 aa17.3■□□□□ 0.36
SHMT2-222ENST00000555774 PNNQ9H307 717 aaKnown RBP17.3■□□□□ 0.36
SHMT2-222ENST00000555774 PPP6R1Q9UPN7 881 aa17.3■□□□□ 0.36
SHMT2-222ENST00000555774 DLC1Q96QB1 1528 aa17.29■□□□□ 0.36
SHMT2-222ENST00000555774 ALKQ9UM73 1620 aa17.29■□□□□ 0.36
SHMT2-222ENST00000555774 STK26Q9P289 416 aa17.29■□□□□ 0.36
SHMT2-222ENST00000555774 ARHGEF40Q8TER5 1519 aa17.28■□□□□ 0.36
SHMT2-222ENST00000555774 ZKSCAN2Q63HK3 967 aa17.28■□□□□ 0.36
SHMT2-222ENST00000555774 HDGFL2Q7Z4V5 671 aaPredicted RBP17.28■□□□□ 0.36
SHMT2-222ENST00000555774 PRAM1Q96QH2 718 aa17.28■□□□□ 0.36
SHMT2-222ENST00000555774 RWDD1Q9H446 243 aaPredicted RBP17.28■□□□□ 0.36
SHMT2-222ENST00000555774 POGKQ9P215 609 aa17.28■□□□□ 0.36
SHMT2-222ENST00000555774 AGLP35573 1532 aa17.28■□□□□ 0.36
SHMT2-222ENST00000555774 SAFB2Q14151 953 aaKnown RBP eCLIP17.27■□□□□ 0.36
SHMT2-222ENST00000555774 PNPLA6Q8IY17 1366 aa17.27■□□□□ 0.36
SHMT2-222ENST00000555774 CDC42BPGQ6DT37 1551 aa17.27■□□□□ 0.36
SHMT2-222ENST00000555774 FYB1O15117 783 aa17.27■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 74.9 ms