RNA–Protein interactions for RNA: ENST00000547687.1

CHMP1A-204, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 1 (best)

Gene CHMP1A, Length 2,007 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-204ENST00000547687 FAM135BQ49AJ0 1406 aa22.91■■□□□ 1.26
CHMP1A-204ENST00000547687 CCDC7Q96M83 1385 aa22.91■■□□□ 1.26
CHMP1A-204ENST00000547687 ROBO2Q9HCK4 1378 aa22.91■■□□□ 1.26
CHMP1A-204ENST00000547687 NCOA3Q9Y6Q9 1424 aa22.91■■□□□ 1.26
CHMP1A-204ENST00000547687 PIK3C2GO75747 1445 aa22.9■■□□□ 1.26
CHMP1A-204ENST00000547687 ATF3P18847 181 aa22.9■■□□□ 1.26
CHMP1A-204ENST00000547687 STK26Q9P289 416 aa22.9■■□□□ 1.26
CHMP1A-204ENST00000547687 MYOM2P54296 1465 aa22.89■■□□□ 1.26
CHMP1A-204ENST00000547687 ASXL1Q8IXJ9 1541 aa22.89■■□□□ 1.25
CHMP1A-204ENST00000547687 LAMC1P11047 1609 aa22.88■■□□□ 1.25
CHMP1A-204ENST00000547687 CADPS2Q86UW7 1296 aa22.87■■□□□ 1.25
CHMP1A-204ENST00000547687 ST20-MTHFSA0A0A6YYL1 179 aa22.86■■□□□ 1.25
CHMP1A-204ENST00000547687 PHLPP1O60346 1717 aa22.86■■□□□ 1.25
CHMP1A-204ENST00000547687 PTCH1Q13635 1447 aa22.85■■□□□ 1.25
CHMP1A-204ENST00000547687 CFAP70Q5T0N1 1121 aa22.85■■□□□ 1.25
CHMP1A-204ENST00000547687 ADGRL3Q9HAR2 1447 aa22.84■■□□□ 1.25
CHMP1A-204ENST00000547687 MED1Q15648 1581 aaPredicted RBP22.83■■□□□ 1.25
CHMP1A-204ENST00000547687 NRXN1Q9ULB1 1477 aa22.83■■□□□ 1.25
CHMP1A-204ENST00000547687 KIF7Q2M1P5 1343 aa22.83■■□□□ 1.25
CHMP1A-204ENST00000547687 WAPLQ7Z5K2 1190 aa22.82■■□□□ 1.24
CHMP1A-204ENST00000547687 KIAA1210Q9ULL0 1709 aa22.82■■□□□ 1.24
CHMP1A-204ENST00000547687 MST1RQ04912 1400 aa22.8■■□□□ 1.24
CHMP1A-204ENST00000547687 C14orf93Q9H972 538 aaKnown RBP22.8■■□□□ 1.24
CHMP1A-204ENST00000547687 DCCP43146 1447 aa22.79■■□□□ 1.24
CHMP1A-204ENST00000547687 PLEKHH1Q9ULM0 1364 aa22.79■■□□□ 1.24
CHMP1A-204ENST00000547687 BRINP3Q76B58 766 aa22.79■■□□□ 1.24
CHMP1A-204ENST00000547687 KNDC1Q76NI1 1749 aa22.78■■□□□ 1.24
CHMP1A-204ENST00000547687 YTHDC2Q9H6S0 1430 aaKnown RBP22.78■■□□□ 1.24
CHMP1A-204ENST00000547687 LRPPRCP42704 1394 aaKnown RBP22.78■■□□□ 1.24
CHMP1A-204ENST00000547687 ILDR2Q71H61 639 aa22.76■■□□□ 1.23
CHMP1A-204ENST00000547687 DDX17Q92841 729 aaKnown RBP22.76■■□□□ 1.23
CHMP1A-204ENST00000547687 COL16A1Q07092 1604 aaPredicted RBP22.76■■□□□ 1.23
CHMP1A-204ENST00000547687 TECPR2O15040 1411 aa22.74■■□□□ 1.23
CHMP1A-204ENST00000547687 ABCC11Q96J66 1382 aa22.73■■□□□ 1.23
CHMP1A-204ENST00000547687 SAFB2Q14151 953 aaKnown RBP eCLIP22.73■■□□□ 1.23
CHMP1A-204ENST00000547687 NUTM2FA1L443 756 aa22.72■■□□□ 1.23
CHMP1A-204ENST00000547687 POLR3GLQ9BT43 218 aa22.72■■□□□ 1.23
CHMP1A-204ENST00000547687 AHDC1Q5TGY3 1603 aaPredicted RBP22.71■■□□□ 1.23
CHMP1A-204ENST00000547687 C1orf167Q5SNV9 1468 aa22.71■■□□□ 1.23
CHMP1A-204ENST00000547687 TESK2Q96S53 571 aa22.71■■□□□ 1.23
CHMP1A-204ENST00000547687 ORAI2Q96SN7 254 aa22.7■■□□□ 1.23
CHMP1A-204ENST00000547687 ADGRB1O14514 1584 aa22.7■■□□□ 1.22
CHMP1A-204ENST00000547687 NHSL1Q5SYE7 1610 aa22.7■■□□□ 1.22
CHMP1A-204ENST00000547687 PRKRIP1Q9H875 184 aaPredicted RBP22.69■■□□□ 1.22
CHMP1A-204ENST00000547687 TRAK1Q9UPV9 953 aa22.68■■□□□ 1.22
CHMP1A-204ENST00000547687 CDC42BPGQ6DT37 1551 aa22.68■■□□□ 1.22
CHMP1A-204ENST00000547687 PRAM1Q96QH2 718 aa22.67■■□□□ 1.22
CHMP1A-204ENST00000547687 PHF23Q9BUL5 403 aaPredicted RBP22.67■■□□□ 1.22
CHMP1A-204ENST00000547687 RGPD8O14715 1765 aaPredicted RBP22.67■■□□□ 1.22
CHMP1A-204ENST00000547687 JCADQ9P266 1359 aa22.65■■□□□ 1.22
CHMP1A-204ENST00000547687 EIF3AQ14152 1382 aaKnown RBP22.64■■□□□ 1.22
CHMP1A-204ENST00000547687 FMN2Q9NZ56 1722 aa22.64■■□□□ 1.21
CHMP1A-204ENST00000547687 ESCO1Q5FWF5 840 aa22.62■■□□□ 1.21
CHMP1A-204ENST00000547687 POGKQ9P215 609 aa22.62■■□□□ 1.21
CHMP1A-204ENST00000547687 TMF1P82094 1093 aa22.62■■□□□ 1.21
CHMP1A-204ENST00000547687 SHPRHQ149N8 1683 aa22.61■■□□□ 1.21
CHMP1A-204ENST00000547687 ARHGEF28Q8N1W1 1705 aaKnown RBP22.6■■□□□ 1.21
CHMP1A-204ENST00000547687 DLC1Q96QB1 1528 aa22.59■■□□□ 1.21
CHMP1A-204ENST00000547687 LRP6O75581 1613 aa22.59■■□□□ 1.21
CHMP1A-204ENST00000547687 XPCQ01831 940 aaPredicted RBP22.58■■□□□ 1.21
CHMP1A-204ENST00000547687 SIRT1Q96EB6 747 aa22.58■■□□□ 1.21
CHMP1A-204ENST00000547687 MINK1Q8N4C8 1332 aaPredicted RBP22.58■■□□□ 1.21
CHMP1A-204ENST00000547687 RGS17Q9UGC6 210 aaPredicted RBP22.58■■□□□ 1.2
CHMP1A-204ENST00000547687 NUTM2BA6NNL0 878 aaPredicted RBP22.57■■□□□ 1.2
CHMP1A-204ENST00000547687 NUTM2EB1AL46 878 aaPredicted RBP22.57■■□□□ 1.2
CHMP1A-204ENST00000547687 CCDC184Q52MB2 194 aa22.57■■□□□ 1.2
CHMP1A-204ENST00000547687 NUTM2AQ8IVF1 878 aaPredicted RBP22.57■■□□□ 1.2
CHMP1A-204ENST00000547687 FOXO3O43524 673 aa22.55■■□□□ 1.2
CHMP1A-204ENST00000547687 LRRC59Q96AG4 307 aaKnown RBP22.53■■□□□ 1.2
CHMP1A-204ENST00000547687 MRS2Q9HD23 443 aa22.53■■□□□ 1.2
CHMP1A-204ENST00000547687 USP32Q8NFA0 1604 aa22.53■■□□□ 1.2
CHMP1A-204ENST00000547687 CENPJQ9HC77 1338 aaPredicted RBP22.53■■□□□ 1.2
CHMP1A-204ENST00000547687 HNRNPUQ00839 825 aaKnown RBP eCLIP22.52■■□□□ 1.19
CHMP1A-204ENST00000547687 MEX3CQ5U5Q3 659 aaKnown RBP22.51■■□□□ 1.19
CHMP1A-204ENST00000547687 SOS2Q07890 1332 aaPredicted RBP22.51■■□□□ 1.19
CHMP1A-204ENST00000547687 SPATA31A6Q5VVP1 1343 aa22.51■■□□□ 1.19
CHMP1A-204ENST00000547687 PNPLA6Q8IY17 1366 aa22.51■■□□□ 1.19
CHMP1A-204ENST00000547687 ADGRB2O60241 1585 aa22.5■■□□□ 1.19
CHMP1A-204ENST00000547687 SBNO2Q9Y2G9 1366 aa22.49■■□□□ 1.19
CHMP1A-204ENST00000547687 PXDNQ92626 1479 aa22.49■■□□□ 1.19
CHMP1A-204ENST00000547687 QRICH2Q9H0J4 1663 aa22.49■■□□□ 1.19
CHMP1A-204ENST00000547687 SLC24A1O60721 1099 aa22.48■■□□□ 1.19
CHMP1A-204ENST00000547687 CDCA8Q53HL2 280 aa22.48■■□□□ 1.19
CHMP1A-204ENST00000547687 SUPT16HQ9Y5B9 1047 aaKnown RBP22.48■■□□□ 1.19
CHMP1A-204ENST00000547687 KIF1AQ12756 1690 aa22.48■■□□□ 1.19
CHMP1A-204ENST00000547687 NPHP3Q7Z494 1330 aa22.48■■□□□ 1.19
CHMP1A-204ENST00000547687 POTEAQ6S8J7 498 aa22.47■■□□□ 1.19
CHMP1A-204ENST00000547687 PMFBP1Q8TBY8 1022 aa22.47■■□□□ 1.19
CHMP1A-204ENST00000547687 FAM9BQ8IZU0 186 aa22.46■■□□□ 1.19
CHMP1A-204ENST00000547687 CNGB1Q14028 1251 aaPredicted RBP22.45■■□□□ 1.18
CHMP1A-204ENST00000547687 PHF8Q9UPP1 1060 aa22.45■■□□□ 1.18
CHMP1A-204ENST00000547687 PRR36Q9H6K5 1346 aa22.45■■□□□ 1.18
CHMP1A-204ENST00000547687 WASLO00401 505 aaPredicted RBP22.44■■□□□ 1.18
CHMP1A-204ENST00000547687 PLEKHG5O94827 1062 aa22.43■■□□□ 1.18
CHMP1A-204ENST00000547687 ADAMTS2O95450 1211 aa22.43■■□□□ 1.18
CHMP1A-204ENST00000547687 PANK3Q9H999 370 aa22.43■■□□□ 1.18
CHMP1A-204ENST00000547687 TULP4Q9NRJ4 1543 aa22.41■■□□□ 1.18
CHMP1A-204ENST00000547687 PER1O15534 1290 aaPredicted RBP22.41■■□□□ 1.18
CHMP1A-204ENST00000547687 KRT28Q7Z3Y7 464 aa22.41■■□□□ 1.18
CHMP1A-204ENST00000547687 SOCS7O14512 581 aa22.4■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms