RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 DHX29Q7Z478 1369 aaKnown RBP19.52■□□□□ 0.72
CUX1-211ENST00000546411 SLC52A1Q9NWF4 448 aa19.52■□□□□ 0.71
CUX1-211ENST00000546411 ADGRL1O94910 1474 aa19.51■□□□□ 0.71
CUX1-211ENST00000546411 FRAT2O75474 233 aaPredicted RBP19.51■□□□□ 0.71
CUX1-211ENST00000546411 SLC26A8Q96RN1 970 aa19.51■□□□□ 0.71
CUX1-211ENST00000546411 GNAI1P63096 354 aa19.51■□□□□ 0.71
CUX1-211ENST00000546411 SYCP2Q9BX26 1530 aa19.51■□□□□ 0.71
CUX1-211ENST00000546411 AMER1Q5JTC6 1135 aaPredicted RBP19.51■□□□□ 0.71
CUX1-211ENST00000546411 C22orf23Q9BZE7 217 aa19.5■□□□□ 0.71
CUX1-211ENST00000546411 KIAA1211Q6ZU35 1233 aa19.49■□□□□ 0.71
CUX1-211ENST00000546411 PER1O15534 1290 aaPredicted RBP19.49■□□□□ 0.71
CUX1-211ENST00000546411 RALGAPBQ86X10 1494 aa19.49■□□□□ 0.71
CUX1-211ENST00000546411 PRAG1Q86YV5 1406 aa19.49■□□□□ 0.71
CUX1-211ENST00000546411 TRAPPC8Q9Y2L5 1435 aa19.49■□□□□ 0.71
CUX1-211ENST00000546411 GOLGA6L3A6NEY3 463 aa19.49■□□□□ 0.71
CUX1-211ENST00000546411 DNTTIP2Q5QJE6 756 aaKnown RBP19.48■□□□□ 0.71
CUX1-211ENST00000546411 FKBP5Q13451 457 aaPredicted RBP19.48■□□□□ 0.71
CUX1-211ENST00000546411 CD109Q6YHK3 1445 aa19.48■□□□□ 0.71
CUX1-211ENST00000546411 SULT6B1Q6IMI4 303 aa19.47■□□□□ 0.71
CUX1-211ENST00000546411 API5Q9BZZ5 524 aaKnown RBP19.47■□□□□ 0.71
CUX1-211ENST00000546411 NOS1P29475 1434 aa19.47■□□□□ 0.71
CUX1-211ENST00000546411 TMPOP42166 694 aaKnown RBP19.47■□□□□ 0.71
CUX1-211ENST00000546411 NLRP6P59044 892 aa19.47■□□□□ 0.71
CUX1-211ENST00000546411 TSPYL4Q9UJ04 414 aa19.47■□□□□ 0.71
CUX1-211ENST00000546411 ABCA5Q8WWZ7 1642 aa19.46■□□□□ 0.71
CUX1-211ENST00000546411 FANCAO15360 1455 aa19.46■□□□□ 0.71
CUX1-211ENST00000546411 WDR63Q8IWG1 891 aa19.46■□□□□ 0.71
CUX1-211ENST00000546411 TWISTNBQ3B726 338 aaPredicted RBP19.45■□□□□ 0.7
CUX1-211ENST00000546411 TEX14Q8IWB6 1497 aa19.45■□□□□ 0.7
CUX1-211ENST00000546411 RARSP54136 660 aaKnown RBP19.45■□□□□ 0.7
CUX1-211ENST00000546411 ATF7IPQ6VMQ6 1270 aa19.45■□□□□ 0.7
CUX1-211ENST00000546411 CCDC9Q9Y3X0 531 aaKnown RBP19.45■□□□□ 0.7
CUX1-211ENST00000546411 FAM135AQ9P2D6 1515 aa19.45■□□□□ 0.7
CUX1-211ENST00000546411 ABCF1Q8NE71 845 aaKnown RBP eCLIP19.44■□□□□ 0.7
CUX1-211ENST00000546411 KDM6BO15054 1643 aa19.44■□□□□ 0.7
CUX1-211ENST00000546411 SAMD9Q5K651 1589 aa19.44■□□□□ 0.7
CUX1-211ENST00000546411 DCTN1Q14203 1278 aa19.44■□□□□ 0.7
CUX1-211ENST00000546411 CHMP3Q9Y3E7 222 aa19.43■□□□□ 0.7
CUX1-211ENST00000546411 TEFQ10587 303 aa19.43■□□□□ 0.7
CUX1-211ENST00000546411 MVPQ14764 893 aaKnown RBP19.43■□□□□ 0.7
CUX1-211ENST00000546411 SCAF11Q99590 1463 aaKnown RBP19.43■□□□□ 0.7
CUX1-211ENST00000546411 ZNF428Q96B54 188 aa19.43■□□□□ 0.7
CUX1-211ENST00000546411 SSH1Q8WYL5 1049 aa19.42■□□□□ 0.7
CUX1-211ENST00000546411 PARD3Q8TEW0 1356 aa19.42■□□□□ 0.7
CUX1-211ENST00000546411 CFAP44Q96MT7 982 aa19.42■□□□□ 0.7
CUX1-211ENST00000546411 PLCH2O75038 1416 aa19.41■□□□□ 0.7
CUX1-211ENST00000546411 EIF4G3O43432 1585 aaKnown RBP19.41■□□□□ 0.7
CUX1-211ENST00000546411 RPGRIP1LQ68CZ1 1315 aa19.41■□□□□ 0.7
CUX1-211ENST00000546411 TMEM57Q8N5G2 664 aa19.4■□□□□ 0.7
CUX1-211ENST00000546411 CARD14Q9BXL6 1004 aa19.4■□□□□ 0.7
CUX1-211ENST00000546411 IGHDP01880 384 aa19.4■□□□□ 0.7
CUX1-211ENST00000546411 EMILIN1Q9Y6C2 1016 aa19.4■□□□□ 0.7
CUX1-211ENST00000546411 SPINK5Q9NQ38 1064 aaPredicted RBP19.39■□□□□ 0.69
CUX1-211ENST00000546411 GOLGA6L4A6NEF3 574 aa19.39■□□□□ 0.69
CUX1-211ENST00000546411 ST18O60284 1047 aa19.39■□□□□ 0.69
CUX1-211ENST00000546411 NME9Q86XW9 330 aa19.39■□□□□ 0.69
CUX1-211ENST00000546411 C14orf93Q9H972 538 aaKnown RBP19.39■□□□□ 0.69
CUX1-211ENST00000546411 PSME1Q06323 249 aa19.38■□□□□ 0.69
CUX1-211ENST00000546411 DDX49Q9Y6V7 483 aaKnown RBP19.38■□□□□ 0.69
CUX1-211ENST00000546411 DNMT1P26358 1616 aaKnown RBP19.38■□□□□ 0.69
CUX1-211ENST00000546411 MIS18AQ9NYP9 233 aa19.38■□□□□ 0.69
CUX1-211ENST00000546411 TNNQ9UQP3 1299 aa19.37■□□□□ 0.69
CUX1-211ENST00000546411 RTEL1-TNFRSF6BF6WH68 1400 aa19.37■□□□□ 0.69
CUX1-211ENST00000546411 CHMP5Q9NZZ3 219 aa19.37■□□□□ 0.69
CUX1-211ENST00000546411 PLEKHH1Q9ULM0 1364 aa19.37■□□□□ 0.69
CUX1-211ENST00000546411 BRPF3Q9ULD4 1205 aa19.36■□□□□ 0.69
CUX1-211ENST00000546411 IL27Q8NEV9 243 aa19.36■□□□□ 0.69
CUX1-211ENST00000546411 ANO2Q9NQ90 1003 aa19.36■□□□□ 0.69
CUX1-211ENST00000546411 ITSN2Q9NZM3 1697 aa19.35■□□□□ 0.69
CUX1-211ENST00000546411 ABTB2Q8N961 1025 aa19.35■□□□□ 0.69
CUX1-211ENST00000546411 NUDT16Q96DE0 195 aaKnown RBP19.35■□□□□ 0.69
CUX1-211ENST00000546411 SLC4A2P04920 1241 aa19.35■□□□□ 0.69
CUX1-211ENST00000546411 NKTRP30414 1462 aaKnown RBP19.35■□□□□ 0.69
CUX1-211ENST00000546411 CCDC61Q9Y6R9 512 aa19.33■□□□□ 0.69
CUX1-211ENST00000546411 KDM5BQ9UGL1 1544 aa19.33■□□□□ 0.69
CUX1-211ENST00000546411 ATAD2Q6PL18 1390 aa19.33■□□□□ 0.69
CUX1-211ENST00000546411 MSNP26038 577 aaKnown RBP19.33■□□□□ 0.69
CUX1-211ENST00000546411 AAMPQ13685 434 aa19.33■□□□□ 0.69
CUX1-211ENST00000546411 ZRSR1Q15695 479 aaKnown RBP19.33■□□□□ 0.69
CUX1-211ENST00000546411 C1orf141Q5JVX7 400 aa19.33■□□□□ 0.68
CUX1-211ENST00000546411 NUP160Q12769 1436 aa19.32■□□□□ 0.68
CUX1-211ENST00000546411 SPATA31E1Q6ZUB1 1445 aa19.32■□□□□ 0.68
CUX1-211ENST00000546411 FCHSD2O94868 740 aa19.32■□□□□ 0.68
CUX1-211ENST00000546411 C9orf78Q9NZ63 289 aaPredicted RBP19.32■□□□□ 0.68
CUX1-211ENST00000546411 MCM10Q7L590 875 aa19.32■□□□□ 0.68
CUX1-211ENST00000546411 RBM33Q96EV2 1170 aaKnown RBP19.32■□□□□ 0.68
CUX1-211ENST00000546411 LRPPRCP42704 1394 aaKnown RBP19.32■□□□□ 0.68
CUX1-211ENST00000546411 TRIM27P14373 513 aa19.31■□□□□ 0.68
CUX1-211ENST00000546411 GPRASP1Q5JY77 1395 aa19.31■□□□□ 0.68
CUX1-211ENST00000546411 PBRM1Q86U86 1689 aa19.3■□□□□ 0.68
CUX1-211ENST00000546411 DDX11L8A8MPP1 907 aa19.3■□□□□ 0.68
CUX1-211ENST00000546411 A2MP01023 1474 aa19.3■□□□□ 0.68
CUX1-211ENST00000546411 TARBP1Q13395 1621 aaKnown RBP19.3■□□□□ 0.68
CUX1-211ENST00000546411 AIMP1Q12904 312 aaKnown RBP19.3■□□□□ 0.68
CUX1-211ENST00000546411 DMRT2Q9Y5R5 561 aa19.3■□□□□ 0.68
CUX1-211ENST00000546411 CEBPAP49715 358 aaPredicted RBP19.3■□□□□ 0.68
CUX1-211ENST00000546411 NFE2L2Q16236 605 aa19.29■□□□□ 0.68
CUX1-211ENST00000546411 PCDHB15Q9Y5E8 787 aa19.29■□□□□ 0.68
CUX1-211ENST00000546411 REC8O95072 547 aa19.29■□□□□ 0.68
CUX1-211ENST00000546411 GLIPR1L2Q4G1C9 344 aa19.29■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 97.3 ms