RNA–Protein interactions for RNA: ENST00000540975.5

YBX3-210, Transcript of Y-box binding protein 3, human

TSL 3

Gene YBX3, Length 677 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-210	ENST00000540975		A0A0G2JS52	829 aa		13.79	□□□□□ -0.2
YBX3-210	ENST00000540975	FAM160A2	Q8N612	972 aa	Predicted RBP	13.79	□□□□□ -0.2
YBX3-210	ENST00000540975	SYMPK	Q92797	1274 aa	Known RBP	13.79	□□□□□ -0.2
YBX3-210	ENST00000540975	PCDHB15	Q9Y5E8	787 aa		13.79	□□□□□ -0.2
YBX3-210	ENST00000540975	PPP1R18	Q6NYC8	613 aa		13.78	□□□□□ -0.2
YBX3-210	ENST00000540975	POLR3E	Q9NVU0	708 aa		13.78	□□□□□ -0.2
YBX3-210	ENST00000540975	LIMD1	Q9UGP4	676 aa		13.77	□□□□□ -0.21
YBX3-210	ENST00000540975	SKIV2L	Q15477	1246 aa	Known RBP	13.76	□□□□□ -0.21
YBX3-210	ENST00000540975	USB1	Q9BQ65	265 aa	Known RBP	13.76	□□□□□ -0.21
YBX3-210	ENST00000540975	SLC6A16	Q9GZN6	736 aa		13.76	□□□□□ -0.21
YBX3-210	ENST00000540975	C6orf229	H3BNL8	230 aa		13.75	□□□□□ -0.21
YBX3-210	ENST00000540975	SH3D19	Q5HYK7	790 aa		13.75	□□□□□ -0.21
YBX3-210	ENST00000540975	EIF4ENIF1	Q9NRA8	985 aa	Known RBP	13.75	□□□□□ -0.21
YBX3-210	ENST00000540975	S1PR4	O95977	384 aa		13.74	□□□□□ -0.21
YBX3-210	ENST00000540975	GGCX	P38435	758 aa		13.73	□□□□□ -0.21
YBX3-210	ENST00000540975	CLK2	P49760	499 aa	Known RBP	13.73	□□□□□ -0.21
YBX3-210	ENST00000540975	TUSC1	Q2TAM9	212 aa		13.73	□□□□□ -0.21
YBX3-210	ENST00000540975	MTMR2	Q13614	643 aa		13.71	□□□□□ -0.21
YBX3-210	ENST00000540975	CSPP1	Q1MSJ5	1256 aa		13.71	□□□□□ -0.21
YBX3-210	ENST00000540975	MSS51	Q4VC12	460 aa		13.71	□□□□□ -0.21
YBX3-210	ENST00000540975	RETREG3	Q86VR2	466 aa		13.71	□□□□□ -0.21
YBX3-210	ENST00000540975	HRC	P23327	699 aa		13.7	□□□□□ -0.22
YBX3-210	ENST00000540975	PRPF38B	Q5VTL8	546 aa	Known RBP	13.7	□□□□□ -0.22
YBX3-210	ENST00000540975	PROCA1	Q8NCQ7	364 aa	Predicted RBP	13.7	□□□□□ -0.22
YBX3-210	ENST00000540975	GOPC	Q9HD26	462 aa		13.7	□□□□□ -0.22
YBX3-210	ENST00000540975	SPDYE5	A6NIY4	337 aa		13.69	□□□□□ -0.22
YBX3-210	ENST00000540975	RNF223	E7ERA6	249 aa		13.69	□□□□□ -0.22
YBX3-210	ENST00000540975	PPEF1	O14829	653 aa	Predicted RBP	13.68	□□□□□ -0.22
YBX3-210	ENST00000540975	CABLES1	Q8TDN4	633 aa		13.68	□□□□□ -0.22
YBX3-210	ENST00000540975	ZBTB3	Q9H5J0	574 aa		13.68	□□□□□ -0.22
YBX3-210	ENST00000540975	PRDM9	Q9NQV7	894 aa		13.68	□□□□□ -0.22
YBX3-210	ENST00000540975	LILRB3	O75022	631 aa		13.67	□□□□□ -0.22
YBX3-210	ENST00000540975	QPCT	Q16769	361 aa		13.67	□□□□□ -0.22
YBX3-210	ENST00000540975	MMP16	P51512	607 aa		13.66	□□□□□ -0.22
YBX3-210	ENST00000540975	NUTM2B	A6NNL0	878 aa	Predicted RBP	13.65	□□□□□ -0.22
YBX3-210	ENST00000540975	NUTM2E	B1AL46	878 aa	Predicted RBP	13.65	□□□□□ -0.22
YBX3-210	ENST00000540975	NUTM2D	Q5VT03	806 aa	Predicted RBP	13.65	□□□□□ -0.22
YBX3-210	ENST00000540975	NUTM2A	Q8IVF1	878 aa	Predicted RBP	13.65	□□□□□ -0.22
YBX3-210	ENST00000540975	PRR7	Q8TB68	274 aa		13.65	□□□□□ -0.22
YBX3-210	ENST00000540975	GNL3	Q9BVP2	549 aa	Known RBP eCLIP	13.65	□□□□□ -0.22
YBX3-210	ENST00000540975	ATP1B4	Q9UN42	357 aa	Predicted RBP	13.65	□□□□□ -0.22
YBX3-210	ENST00000540975	ANKLE1	Q8NAG6	615 aa		13.64	□□□□□ -0.23
YBX3-210	ENST00000540975	DXO	O77932	396 aa	Known RBP	13.63	□□□□□ -0.23
YBX3-210	ENST00000540975	RTL5	Q5HYW3	569 aa	Predicted RBP	13.63	□□□□□ -0.23
YBX3-210	ENST00000540975	PCMTD1	Q96MG8	357 aa	Predicted RBP	13.62	□□□□□ -0.23
YBX3-210	ENST00000540975	RGS20	O76081	388 aa		13.61	□□□□□ -0.23
YBX3-210	ENST00000540975	JUND	P17535	347 aa		13.61	□□□□□ -0.23
YBX3-210	ENST00000540975	CFAP99	D6REC4	459 aa		13.6	□□□□□ -0.23
YBX3-210	ENST00000540975	FBXO31	Q5XUX0	539 aa	Predicted RBP	13.6	□□□□□ -0.23
YBX3-210	ENST00000540975	DESI1	Q6ICB0	168 aa		13.6	□□□□□ -0.23
YBX3-210	ENST00000540975	FCF1	Q9Y324	198 aa	Known RBP	13.59	□□□□□ -0.23
YBX3-210	ENST00000540975	PPP2R2D	Q66LE6	453 aa		13.57	□□□□□ -0.24
YBX3-210	ENST00000540975	PLA2G2C	Q5R387	149 aa		13.56	□□□□□ -0.24
YBX3-210	ENST00000540975	EMID1	Q96A84	441 aa	Predicted RBP	13.55	□□□□□ -0.24
YBX3-210	ENST00000540975	PRKD2	Q9BZL6	878 aa		13.55	□□□□□ -0.24
YBX3-210	ENST00000540975	LYPD8	Q6UX82	237 aa		13.53	□□□□□ -0.24
YBX3-210	ENST00000540975	LIAT1	Q6ZQX7	453 aa		13.53	□□□□□ -0.24
YBX3-210	ENST00000540975	CCDC24	Q8N4L8	307 aa		13.53	□□□□□ -0.24
YBX3-210	ENST00000540975	SLC19A1	P41440	591 aa		13.52	□□□□□ -0.25
YBX3-210	ENST00000540975	TSC1	Q92574	1164 aa		13.52	□□□□□ -0.25
YBX3-210	ENST00000540975	NUDT12	Q9BQG2	462 aa		13.52	□□□□□ -0.25
YBX3-210	ENST00000540975		V9GY48	417 aa	Predicted RBP	13.52	□□□□□ -0.25
YBX3-210	ENST00000540975	PTPRN	Q16849	979 aa		13.51	□□□□□ -0.25
YBX3-210	ENST00000540975	EVA1B	Q9NVM1	165 aa		13.5	□□□□□ -0.25
YBX3-210	ENST00000540975	PER1	O15534	1290 aa	Predicted RBP	13.49	□□□□□ -0.25
YBX3-210	ENST00000540975	CTDSPL2	Q05D32	466 aa		13.49	□□□□□ -0.25
YBX3-210	ENST00000540975	CCNYL3	P0C7X3	344 aa		13.48	□□□□□ -0.25
YBX3-210	ENST00000540975	RFC5	P40937	340 aa		13.48	□□□□□ -0.25
YBX3-210	ENST00000540975	HELB	Q8NG08	1087 aa	Predicted RBP	13.48	□□□□□ -0.25
YBX3-210	ENST00000540975	PTCRA	Q6ISU1	281 aa	Predicted RBP	13.47	□□□□□ -0.25
YBX3-210	ENST00000540975	ZBTB24	O43167	697 aa	Predicted RBP	13.46	□□□□□ -0.25
YBX3-210	ENST00000540975	RPIA	P49247	311 aa		13.46	□□□□□ -0.25
YBX3-210	ENST00000540975	SPRYD7	Q5W111	196 aa		13.46	□□□□□ -0.25
YBX3-210	ENST00000540975	CD2BP2	O95400	341 aa	Known RBP	13.45	□□□□□ -0.26
YBX3-210	ENST00000540975	AP1G2	O75843	785 aa		13.44	□□□□□ -0.26
YBX3-210	ENST00000540975	KCNH2	Q12809	1159 aa		13.44	□□□□□ -0.26
YBX3-210	ENST00000540975	TMEM132A	Q24JP5	1023 aa		13.43	□□□□□ -0.26
YBX3-210	ENST00000540975	TMEM259	Q4ZIN3	620 aa		13.43	□□□□□ -0.26
YBX3-210	ENST00000540975	ZNF598	Q86UK7	904 aa	Known RBP	13.42	□□□□□ -0.26
YBX3-210	ENST00000540975	F12	P00748	615 aa	Predicted RBP	13.41	□□□□□ -0.26
YBX3-210	ENST00000540975	CTH	P32929	405 aa		13.41	□□□□□ -0.26
YBX3-210	ENST00000540975	TRIM32	Q13049	653 aa		13.39	□□□□□ -0.27
YBX3-210	ENST00000540975	LRRN4	Q8WUT4	740 aa		13.39	□□□□□ -0.27
YBX3-210	ENST00000540975	MAP10	Q9P2G4	905 aa		13.39	□□□□□ -0.27
YBX3-210	ENST00000540975	UNC93B1	Q9H1C4	597 aa		13.38	□□□□□ -0.27
YBX3-210	ENST00000540975	ZNF697	Q5TEC3	545 aa		13.37	□□□□□ -0.27
YBX3-210	ENST00000540975	USP17L8	P0C7I0	530 aa		13.35	□□□□□ -0.27
YBX3-210	ENST00000540975	BAP1	Q92560	729 aa		13.34	□□□□□ -0.27
YBX3-210	ENST00000540975	BANK1	Q8NDB2	785 aa		13.33	□□□□□ -0.28
YBX3-210	ENST00000540975	SKOR1	P84550	965 aa		13.32	□□□□□ -0.28
YBX3-210	ENST00000540975	NR6A1	Q15406	480 aa		13.31	□□□□□ -0.28
YBX3-210	ENST00000540975	HMX1	Q9NP08	348 aa	Predicted RBP	13.31	□□□□□ -0.28
YBX3-210	ENST00000540975	WNT7B	P56706	349 aa		13.3	□□□□□ -0.28
YBX3-210	ENST00000540975	TRIM67	Q6ZTA4	783 aa		13.3	□□□□□ -0.28
YBX3-210	ENST00000540975	GDF9	O60383	454 aa		13.29	□□□□□ -0.28
YBX3-210	ENST00000540975	SH3BP2	P78314	561 aa		13.29	□□□□□ -0.28
YBX3-210	ENST00000540975	PKD2L1	Q9P0L9	805 aa		13.29	□□□□□ -0.28
YBX3-210	ENST00000540975	FOXC1	Q12948	553 aa		13.28	□□□□□ -0.28
YBX3-210	ENST00000540975	LINC01559	Q495D7	138 aa		13.28	□□□□□ -0.28
YBX3-210	ENST00000540975	EPS8L1	Q8TE68	723 aa		13.28	□□□□□ -0.28

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