RNA–Protein interactions for RNA: ENST00000534389.2

CSDE1-216, Transcript of cold shock domain containing E1, humanhuman

TSL 4

Gene CSDE1, Length 601 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-216ENST00000534389 LIMD1Q9UGP4 676 aa5.16□□□□□ -1.58
CSDE1-216ENST00000534389 APBB1O00213 710 aa5.15□□□□□ -1.59
CSDE1-216ENST00000534389 SPTLC1O15269 473 aa5.15□□□□□ -1.59
CSDE1-216ENST00000534389 ACTN4O43707 911 aaKnown RBP5.15□□□□□ -1.59
CSDE1-216ENST00000534389 UBTFP17480 764 aaKnown RBP5.15□□□□□ -1.59
CSDE1-216ENST00000534389 GUCA2AQ02747 115 aa5.15□□□□□ -1.59
CSDE1-216ENST00000534389 MTMR2Q13614 643 aa5.15□□□□□ -1.59
CSDE1-216ENST00000534389 GJA5P36382 358 aa5.14□□□□□ -1.59
CSDE1-216ENST00000534389 RFC5P40937 340 aa5.14□□□□□ -1.59
CSDE1-216ENST00000534389 COPS2P61201 443 aa5.14□□□□□ -1.59
CSDE1-216ENST00000534389 TMEM259Q4ZIN3 620 aa5.14□□□□□ -1.59
CSDE1-216ENST00000534389 CABLES1Q8TDN4 633 aa5.14□□□□□ -1.59
CSDE1-216ENST00000534389 TIMELESSQ9UNS1 1208 aa5.14□□□□□ -1.59
CSDE1-216ENST00000534389 SPDYE5A6NIY4 337 aa5.13□□□□□ -1.59
CSDE1-216ENST00000534389 FMNL1O95466 1100 aaPredicted RBP5.13□□□□□ -1.59
CSDE1-216ENST00000534389 PRPF38BQ5VTL8 546 aaKnown RBP5.13□□□□□ -1.59
CSDE1-216ENST00000534389 WWC1Q8IX03 1113 aa5.13□□□□□ -1.59
CSDE1-216ENST00000534389 HLA-CQ95604 372 aa5.13□□□□□ -1.59
CSDE1-216ENST00000534389 PCDHB15Q9Y5E8 787 aa5.13□□□□□ -1.59
CSDE1-216ENST00000534389 QPCTQ16769 361 aa5.12□□□□□ -1.59
CSDE1-216ENST00000534389 BLOC1S3Q6QNY0 202 aa5.12□□□□□ -1.59
CSDE1-216ENST00000534389 PCGF6Q9BYE7 350 aa5.12□□□□□ -1.59
CSDE1-216ENST00000534389 SLC27A5Q9Y2P5 690 aa5.12□□□□□ -1.59
CSDE1-216ENST00000534389 MYO15BQ96JP2 1530 aa5.12□□□□□ -1.59
CSDE1-216ENST00000534389 TUSC1Q2TAM9 212 aa5.11□□□□□ -1.59
CSDE1-216ENST00000534389 PNMA1Q8ND90 353 aa5.11□□□□□ -1.59
CSDE1-216ENST00000534389 SYMPKQ92797 1274 aaKnown RBP5.11□□□□□ -1.59
CSDE1-216ENST00000534389 MTRQ99707 1265 aa5.11□□□□□ -1.59
CSDE1-216ENST00000534389 GNL3Q9BVP2 549 aaKnown RBP eCLIP5.11□□□□□ -1.59
CSDE1-216ENST00000534389 LILRB3O75022 631 aa5.1□□□□□ -1.59
CSDE1-216ENST00000534389 RTL5Q5HYW3 569 aaPredicted RBP5.1□□□□□ -1.59
CSDE1-216ENST00000534389 TJAP1Q5JTD0 557 aa5.1□□□□□ -1.59
CSDE1-216ENST00000534389 MORN1Q5T089 497 aa5.1□□□□□ -1.59
CSDE1-216ENST00000534389 RETREG3Q86VR2 466 aa5.1□□□□□ -1.59
CSDE1-216ENST00000534389 SCUBE3Q8IX30 993 aa5.1□□□□□ -1.59
CSDE1-216ENST00000534389 PRR7Q8TB68 274 aa5.1□□□□□ -1.59
CSDE1-216ENST00000534389 IL21Q9HBE4 155 aa5.1□□□□□ -1.59
CSDE1-216ENST00000534389 PCDHGC3Q9UN70 934 aa5.1□□□□□ -1.59
CSDE1-216ENST00000534389 USP17L8P0C7I0 530 aa5.09□□□□□ -1.59
CSDE1-216ENST00000534389 BANK1Q8NDB2 785 aa5.09□□□□□ -1.59
CSDE1-216ENST00000534389 SPSB2Q99619 263 aa5.09□□□□□ -1.59
CSDE1-216ENST00000534389 USB1Q9BQ65 265 aaKnown RBP5.09□□□□□ -1.59
CSDE1-216ENST00000534389 TLL1O43897 1013 aa5.08□□□□□ -1.6
CSDE1-216ENST00000534389 ITGBL1O95965 494 aaPredicted RBP5.08□□□□□ -1.6
CSDE1-216ENST00000534389 CTHP32929 405 aa5.08□□□□□ -1.6
CSDE1-216ENST00000534389 PPP2R2DQ66LE6 453 aa5.08□□□□□ -1.6
CSDE1-216ENST00000534389 ZNF516Q92618 1163 aa5.08□□□□□ -1.6
CSDE1-216ENST00000534389 ZMYND15Q9H091 742 aa5.08□□□□□ -1.6
CSDE1-216ENST00000534389 ZPR1O75312 459 aa5.07□□□□□ -1.6
CSDE1-216ENST00000534389 ABL2P42684 1182 aa5.07□□□□□ -1.6
CSDE1-216ENST00000534389 KCNC4Q03721 635 aa5.07□□□□□ -1.6
CSDE1-216ENST00000534389 CTDSPL2Q05D32 466 aa5.07□□□□□ -1.6
CSDE1-216ENST00000534389 MCM6Q14566 821 aa5.07□□□□□ -1.6
CSDE1-216ENST00000534389 RNF19BQ6ZMZ0 732 aa5.07□□□□□ -1.6
CSDE1-216ENST00000534389 CCDC24Q8N4L8 307 aa5.07□□□□□ -1.6
CSDE1-216ENST00000534389 PLA2G2EQ9NZK7 142 aa5.07□□□□□ -1.6
CSDE1-216ENST00000534389 CFAP99D6REC4 459 aa5.06□□□□□ -1.6
CSDE1-216ENST00000534389 SUPT5HO00267 1087 aaKnown RBP5.06□□□□□ -1.6
CSDE1-216ENST00000534389 NKX2-3Q8TAU0 364 aa5.06□□□□□ -1.6
CSDE1-216ENST00000534389 SNRKQ9NRH2 765 aa5.06□□□□□ -1.6
CSDE1-216ENST00000534389 GGCXP38435 758 aa5.05□□□□□ -1.6
CSDE1-216ENST00000534389 BRICD5Q6PL45 260 aa5.05□□□□□ -1.6
CSDE1-216ENST00000534389 CLUAP1Q96AJ1 413 aa5.05□□□□□ -1.6
CSDE1-216ENST00000534389 SLC6A16Q9GZN6 736 aa5.05□□□□□ -1.6
CSDE1-216ENST00000534389 NDUFB9Q9Y6M9 179 aa5.05□□□□□ -1.6
CSDE1-216ENST00000534389 ADH1BP00325 375 aa5.04□□□□□ -1.6
CSDE1-216ENST00000534389 LRRN4Q8WUT4 740 aa5.04□□□□□ -1.6
CSDE1-216ENST00000534389 THAP11Q96EK4 314 aa5.04□□□□□ -1.6
CSDE1-216ENST00000534389 GDPD2Q9HCC8 539 aa5.04□□□□□ -1.6
CSDE1-216ENST00000534389 SALL2Q9Y467 1007 aaPredicted RBP5.04□□□□□ -1.6
CSDE1-216ENST00000534389 JUNDP17535 347 aa5.03□□□□□ -1.6
CSDE1-216ENST00000534389 DESI1Q6ICB0 168 aa5.03□□□□□ -1.6
CSDE1-216ENST00000534389 PROSER2Q86WR7 435 aaPredicted RBP5.03□□□□□ -1.6
CSDE1-216ENST00000534389 NUDT12Q9BQG2 462 aa5.03□□□□□ -1.6
CSDE1-216ENST00000534389 PRDM9Q9NQV7 894 aa5.03□□□□□ -1.6
CSDE1-216ENST00000534389 ZBTB24O43167 697 aaPredicted RBP5.02□□□□□ -1.61
CSDE1-216ENST00000534389 S1PR4O95977 384 aa5.02□□□□□ -1.61
CSDE1-216ENST00000534389 NEUROD1Q13562 356 aa5.02□□□□□ -1.61
CSDE1-216ENST00000534389 NR6A1Q15406 480 aa5.02□□□□□ -1.61
CSDE1-216ENST00000534389 PTPRNQ16849 979 aa5.02□□□□□ -1.61
CSDE1-216ENST00000534389 FAM9AQ8IZU1 332 aaPredicted RBP5.02□□□□□ -1.61
CSDE1-216ENST00000534389 MTMR14Q8NCE2 650 aa5.02□□□□□ -1.61
CSDE1-216ENST00000534389 ARID3AQ99856 593 aa5.02□□□□□ -1.61
CSDE1-216ENST00000534389 ZNF330Q9Y3S2 320 aaPredicted RBP5.02□□□□□ -1.61
CSDE1-216ENST00000534389 ACIN1Q9UKV3 1341 aaKnown RBP5.01□□□□□ -1.61
CSDE1-216ENST00000534389 PER1O15534 1290 aaPredicted RBP5.01□□□□□ -1.61
CSDE1-216ENST00000534389 CCNYL3P0C7X3 344 aa5.01□□□□□ -1.61
CSDE1-216ENST00000534389 AGERQ15109 404 aa5.01□□□□□ -1.61
CSDE1-216ENST00000534389 MSS51Q4VC12 460 aa5.01□□□□□ -1.61
CSDE1-216ENST00000534389 IFFO2Q5TF58 517 aa5.01□□□□□ -1.61
CSDE1-216ENST00000534389 FBXO31Q5XUX0 539 aaPredicted RBP5.01□□□□□ -1.61
CSDE1-216ENST00000534389 LYPD8Q6UX82 237 aa5.01□□□□□ -1.61
CSDE1-216ENST00000534389 FAM160A2Q8N612 972 aaPredicted RBP5.01□□□□□ -1.61
CSDE1-216ENST00000534389 ARMC2Q8NEN0 867 aa5.01□□□□□ -1.61
CSDE1-216ENST00000534389 POM121Q96HA1 1249 aa5.01□□□□□ -1.61
CSDE1-216ENST00000534389 BCL11AQ9H165 835 aa5.01□□□□□ -1.61
CSDE1-216ENST00000534389 TBC1D2BQ9UPU7 963 aa5.01□□□□□ -1.61
CSDE1-216ENST00000534389 COG6Q9Y2V7 657 aa5.01□□□□□ -1.61
CSDE1-216ENST00000534389 TTBK1Q5TCY1 1321 aaPredicted RBP5□□□□□ -1.61
CSDE1-216ENST00000534389 A0A0G2JS52 829 aa5□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms