RNA–Protein interactions for RNA: ENST00000531873.5

CD44-234, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 584 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-234ENST00000531873 PXYLP1Q8TE99 480 aa5.79□□□□□ -1.48
CD44-234ENST00000531873 FAM217BQ9NTX9 383 aaPredicted RBP5.79□□□□□ -1.48
CD44-234ENST00000531873 LOC100996750A0A140TA64 210 aa5.78□□□□□ -1.48
CD44-234ENST00000531873 TNFRSF10AO00220 468 aa5.78□□□□□ -1.48
CD44-234ENST00000531873 INSM1Q01101 510 aaPredicted RBP5.78□□□□□ -1.48
CD44-234ENST00000531873 NFX1Q12986 1120 aaKnown RBP5.78□□□□□ -1.48
CD44-234ENST00000531873 KRTAP4-6Q9BYQ5 205 aa5.78□□□□□ -1.48
CD44-234ENST00000531873 ADGRG1Q9Y653 693 aa5.78□□□□□ -1.48
CD44-234ENST00000531873 AVPP01185 164 aa5.77□□□□□ -1.49
CD44-234ENST00000531873 SSTR3P32745 418 aaPredicted RBP5.77□□□□□ -1.49
CD44-234ENST00000531873 FLIIQ13045 1269 aa5.77□□□□□ -1.49
CD44-234ENST00000531873 PCMTD1Q96MG8 357 aaPredicted RBP5.77□□□□□ -1.49
CD44-234ENST00000531873 EYA1Q99502 592 aa5.77□□□□□ -1.49
CD44-234ENST00000531873 PPEF1O14829 653 aaPredicted RBP5.76□□□□□ -1.49
CD44-234ENST00000531873 TLL1O43897 1013 aa5.76□□□□□ -1.49
CD44-234ENST00000531873 S1PR4O95977 384 aa5.76□□□□□ -1.49
CD44-234ENST00000531873 MCM6Q14566 821 aa5.76□□□□□ -1.49
CD44-234ENST00000531873 BEGAINQ9BUH8 593 aa5.76□□□□□ -1.49
CD44-234ENST00000531873 PKD2L1Q9P0L9 805 aa5.76□□□□□ -1.49
CD44-234ENST00000531873 UBTFP17480 764 aaKnown RBP5.75□□□□□ -1.49
CD44-234ENST00000531873 DACH1Q9UI36 760 aa5.75□□□□□ -1.49
CD44-234ENST00000531873 ARID3CA6NKF2 412 aa5.74□□□□□ -1.49
CD44-234ENST00000531873 ACTN4O43707 911 aaKnown RBP5.74□□□□□ -1.49
CD44-234ENST00000531873 ADH1BP00325 375 aa5.74□□□□□ -1.49
CD44-234ENST00000531873 OATP04181 439 aa5.74□□□□□ -1.49
CD44-234ENST00000531873 SKIV2LQ15477 1246 aaKnown RBP5.74□□□□□ -1.49
CD44-234ENST00000531873 C11orf95C9JLR9 678 aaPredicted RBP5.73□□□□□ -1.49
CD44-234ENST00000531873 SMCPP49901 116 aaPredicted RBP5.73□□□□□ -1.49
CD44-234ENST00000531873 CTC1Q2NKJ3 1217 aa5.73□□□□□ -1.49
CD44-234ENST00000531873 PLA2G2CQ5R387 149 aa5.73□□□□□ -1.49
CD44-234ENST00000531873 MYSM1Q5VVJ2 828 aa5.73□□□□□ -1.49
CD44-234ENST00000531873 PROCA1Q8NCQ7 364 aaPredicted RBP5.73□□□□□ -1.49
CD44-234ENST00000531873 CLUAP1Q96AJ1 413 aa5.73□□□□□ -1.49
CD44-234ENST00000531873 GNL3Q9BVP2 549 aaKnown RBP eCLIP5.73□□□□□ -1.49
CD44-234ENST00000531873 GMPR2Q9P2T1 348 aaKnown RBP5.73□□□□□ -1.49
CD44-234ENST00000531873 A6NJR5 290 aa5.72□□□□□ -1.49
CD44-234ENST00000531873 FBXO31Q5XUX0 539 aaPredicted RBP5.72□□□□□ -1.49
CD44-234ENST00000531873 TOR4AQ9NXH8 423 aa5.72□□□□□ -1.49
CD44-234ENST00000531873 AXIN1O15169 862 aa5.71□□□□□ -1.5
CD44-234ENST00000531873 LCE2CQ5TA81 110 aa5.71□□□□□ -1.5
CD44-234ENST00000531873 POLR3EQ9NVU0 708 aa5.71□□□□□ -1.5
CD44-234ENST00000531873 RPIAP49247 311 aa5.7□□□□□ -1.5
CD44-234ENST00000531873 CLK2P49760 499 aaKnown RBP5.7□□□□□ -1.5
CD44-234ENST00000531873 KMT5BQ4FZB7 885 aa5.7□□□□□ -1.5
CD44-234ENST00000531873 SLC6A16Q9GZN6 736 aa5.7□□□□□ -1.5
CD44-234ENST00000531873 APBB1O00213 710 aa5.69□□□□□ -1.5
CD44-234ENST00000531873 TRAK2O60296 914 aa5.69□□□□□ -1.5
CD44-234ENST00000531873 NR1I2O75469 434 aa5.69□□□□□ -1.5
CD44-234ENST00000531873 DNAJB2P25686 324 aa5.69□□□□□ -1.5
CD44-234ENST00000531873 RBM46Q8TBY0 533 aaKnown RBP5.69□□□□□ -1.5
CD44-234ENST00000531873 POM121Q96HA1 1249 aa5.69□□□□□ -1.5
CD44-234ENST00000531873 ARID3AQ99856 593 aa5.69□□□□□ -1.5
CD44-234ENST00000531873 TBC1D2Q9BYX2 928 aa5.69□□□□□ -1.5
CD44-234ENST00000531873 TMEM134Q9H6X4 195 aa5.69□□□□□ -1.5
CD44-234ENST00000531873 LIMD1Q9UGP4 676 aa5.69□□□□□ -1.5
CD44-234ENST00000531873 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP5.68□□□□□ -1.5
CD44-234ENST00000531873 RCCD1A6NED2 376 aa5.68□□□□□ -1.5
CD44-234ENST00000531873 TERTO14746 1132 aaKnown RBP5.68□□□□□ -1.5
CD44-234ENST00000531873 CD46P15529 392 aa5.68□□□□□ -1.5
CD44-234ENST00000531873 FOXC1Q12948 553 aa5.68□□□□□ -1.5
CD44-234ENST00000531873 RFC5P40937 340 aa5.67□□□□□ -1.5
CD44-234ENST00000531873 PROSER2Q86WR7 435 aaPredicted RBP5.67□□□□□ -1.5
CD44-234ENST00000531873 FNBP4Q8N3X1 1017 aaPredicted RBP5.67□□□□□ -1.5
CD44-234ENST00000531873 SPDYE5A6NIY4 337 aa5.66□□□□□ -1.5
CD44-234ENST00000531873 CFHP08603 1231 aa5.66□□□□□ -1.5
CD44-234ENST00000531873 CYP4X1Q8N118 509 aa5.66□□□□□ -1.5
CD44-234ENST00000531873 CCDC82Q8N4S0 544 aa5.66□□□□□ -1.5
CD44-234ENST00000531873 SPIRE2Q8WWL2 714 aa5.66□□□□□ -1.5
CD44-234ENST00000531873 CD2BP2O95400 341 aaKnown RBP5.65□□□□□ -1.5
CD44-234ENST00000531873 PPP2R2DQ66LE6 453 aa5.65□□□□□ -1.5
CD44-234ENST00000531873 SCUBE3Q8IX30 993 aa5.65□□□□□ -1.5
CD44-234ENST00000531873 FAM181BA6NEQ2 426 aa5.64□□□□□ -1.51
CD44-234ENST00000531873 SLC10A3P09131 477 aa5.64□□□□□ -1.51
CD44-234ENST00000531873 DIXDC1Q155Q3 683 aa5.64□□□□□ -1.51
CD44-234ENST00000531873 TUSC1Q2TAM9 212 aa5.64□□□□□ -1.51
CD44-234ENST00000531873 RSBN1LQ6PCB5 846 aaPredicted RBP5.64□□□□□ -1.51
CD44-234ENST00000531873 RIC3Q7Z5B4 369 aa5.64□□□□□ -1.51
CD44-234ENST00000531873 TRIM47Q96LD4 638 aa5.64□□□□□ -1.51
CD44-234ENST00000531873 SNRKQ9NRH2 765 aa5.64□□□□□ -1.51
CD44-234ENST00000531873 COG6Q9Y2V7 657 aa5.64□□□□□ -1.51
CD44-234ENST00000531873 MOXD2PA6NHM9 499 aa5.63□□□□□ -1.51
CD44-234ENST00000531873 SPTLC1O15269 473 aa5.63□□□□□ -1.51
CD44-234ENST00000531873 SNRPBP14678 240 aaKnown RBP5.63□□□□□ -1.51
CD44-234ENST00000531873 SPSB2Q99619 263 aa5.63□□□□□ -1.51
CD44-234ENST00000531873 SENP2Q9HC62 589 aa5.63□□□□□ -1.51
CD44-234ENST00000531873 ATP13A2Q9NQ11 1180 aa5.63□□□□□ -1.51
CD44-234ENST00000531873 DDX11L8A8MPP1 907 aa5.62□□□□□ -1.51
CD44-234ENST00000531873 QPCTQ16769 361 aa5.62□□□□□ -1.51
CD44-234ENST00000531873 SULF1Q8IWU6 871 aa5.62□□□□□ -1.51
CD44-234ENST00000531873 MTMR14Q8NCE2 650 aa5.62□□□□□ -1.51
CD44-234ENST00000531873 BANK1Q8NDB2 785 aa5.62□□□□□ -1.51
CD44-234ENST00000531873 ATP1B4Q9UN42 357 aaPredicted RBP5.62□□□□□ -1.51
CD44-234ENST00000531873 LORP23490 312 aaPredicted RBP5.61□□□□□ -1.51
CD44-234ENST00000531873 LILRB3O75022 631 aa5.6□□□□□ -1.51
CD44-234ENST00000531873 SMPD1P17405 629 aa5.6□□□□□ -1.51
CD44-234ENST00000531873 NDUFV2P19404 249 aa5.6□□□□□ -1.51
CD44-234ENST00000531873 GJA5P36382 358 aa5.6□□□□□ -1.51
CD44-234ENST00000531873 TMEM259Q4ZIN3 620 aa5.6□□□□□ -1.51
CD44-234ENST00000531873 ZNF777Q9ULD5 760 aaPredicted RBP5.6□□□□□ -1.51
CD44-234ENST00000531873 PCDHB15Q9Y5E8 787 aa5.6□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms