RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 TRAK1Q9UPV9 953 aa29.38■■■□□ 2.29
VPS28-212ENST00000530836 TESK2Q96S53 571 aa29.38■■■□□ 2.29
VPS28-212ENST00000530836 WAPLQ7Z5K2 1190 aa29.36■■■□□ 2.29
VPS28-212ENST00000530836 C14orf37Q86TY3 774 aa29.36■■■□□ 2.29
VPS28-212ENST00000530836 TMF1P82094 1093 aa29.35■■■□□ 2.29
VPS28-212ENST00000530836 FAM135BQ49AJ0 1406 aa29.34■■■□□ 2.29
VPS28-212ENST00000530836 C19orf44Q9H6X5 657 aa29.34■■■□□ 2.29
VPS28-212ENST00000530836 PRAM1Q96QH2 718 aa29.32■■■□□ 2.28
VPS28-212ENST00000530836 MSH6P52701 1360 aa29.32■■■□□ 2.28
VPS28-212ENST00000530836 XIRP1Q702N8 1843 aaKnown RBP29.31■■■□□ 2.28
VPS28-212ENST00000530836 DLC1Q96QB1 1528 aa29.31■■■□□ 2.28
VPS28-212ENST00000530836 PLEKHH1Q9ULM0 1364 aa29.31■■■□□ 2.28
VPS28-212ENST00000530836 KNDC1Q76NI1 1749 aa29.3■■■□□ 2.28
VPS28-212ENST00000530836 CDCA8Q53HL2 280 aa29.3■■■□□ 2.28
VPS28-212ENST00000530836 POGKQ9P215 609 aa29.3■■■□□ 2.28
VPS28-212ENST00000530836 UBAP1LF5GYI3 381 aa29.29■■■□□ 2.28
VPS28-212ENST00000530836 TOM1O60784 492 aa29.29■■■□□ 2.28
VPS28-212ENST00000530836 SBNO2Q9Y2G9 1366 aa29.28■■■□□ 2.28
VPS28-212ENST00000530836 ANP32CO43423 234 aa29.28■■■□□ 2.28
VPS28-212ENST00000530836 ADGRL3Q9HAR2 1447 aa29.27■■■□□ 2.28
VPS28-212ENST00000530836 CADPS2Q86UW7 1296 aa29.25■■■□□ 2.27
VPS28-212ENST00000530836 ATF3P18847 181 aa29.24■■■□□ 2.27
VPS28-212ENST00000530836 SAFB2Q14151 953 aaKnown RBP eCLIP29.24■■■□□ 2.27
VPS28-212ENST00000530836 CENPJQ9HC77 1338 aaPredicted RBP29.24■■■□□ 2.27
VPS28-212ENST00000530836 FBXO41Q8TF61 875 aa29.23■■■□□ 2.27
VPS28-212ENST00000530836 POLR3GLQ9BT43 218 aa29.23■■■□□ 2.27
VPS28-212ENST00000530836 DISP3Q9P2K9 1392 aa29.23■■■□□ 2.27
VPS28-212ENST00000530836 DCCP43146 1447 aa29.21■■■□□ 2.27
VPS28-212ENST00000530836 SLAIN2Q9P270 581 aa29.19■■■□□ 2.26
VPS28-212ENST00000530836 SIPA1L2Q9P2F8 1722 aaPredicted RBP29.18■■■□□ 2.26
VPS28-212ENST00000530836 NALCNQ8IZF0 1738 aa29.16■■■□□ 2.26
VPS28-212ENST00000530836 ARHGEF28Q8N1W1 1705 aaKnown RBP29.15■■■□□ 2.26
VPS28-212ENST00000530836 MINK1Q8N4C8 1332 aaPredicted RBP29.15■■■□□ 2.26
VPS28-212ENST00000530836 PIP4K2BP78356 416 aa29.14■■■□□ 2.26
VPS28-212ENST00000530836 CCER2I3L3R5 266 aa29.12■■■□□ 2.25
VPS28-212ENST00000530836 QRICH2Q9H0J4 1663 aa29.12■■■□□ 2.25
VPS28-212ENST00000530836 MST1RQ04912 1400 aa29.1■■■□□ 2.25
VPS28-212ENST00000530836 SCAF1Q9H7N4 1312 aaKnown RBP29.1■■■□□ 2.25
VPS28-212ENST00000530836 PUS7Q96PZ0 661 aaKnown RBP29.09■■■□□ 2.25
VPS28-212ENST00000530836 CDC42BPGQ6DT37 1551 aa29.09■■■□□ 2.25
VPS28-212ENST00000530836 WASLO00401 505 aaPredicted RBP29.08■■■□□ 2.25
VPS28-212ENST00000530836 C1orf167Q5SNV9 1468 aa29.05■■■□□ 2.24
VPS28-212ENST00000530836 ADGRB2O60241 1585 aa29.05■■■□□ 2.24
VPS28-212ENST00000530836 EVC2Q86UK5 1308 aa29.04■■■□□ 2.24
VPS28-212ENST00000530836 NUTM2FA1L443 756 aa29.03■■■□□ 2.24
VPS28-212ENST00000530836 CDK19Q9BWU1 502 aa29.02■■■□□ 2.24
VPS28-212ENST00000530836 PRKRIP1Q9H875 184 aaPredicted RBP29.02■■■□□ 2.24
VPS28-212ENST00000530836 BRINP3Q76B58 766 aa29.02■■■□□ 2.24
VPS28-212ENST00000530836 ILDR1Q86SU0 546 aaPredicted RBP29.01■■■□□ 2.23
VPS28-212ENST00000530836 KTN1Q86UP2 1357 aaKnown RBP29■■■□□ 2.23
VPS28-212ENST00000530836 ORAI2Q96SN7 254 aa28.99■■■□□ 2.23
VPS28-212ENST00000530836 ESCO1Q5FWF5 840 aa28.98■■■□□ 2.23
VPS28-212ENST00000530836 PANK3Q9H999 370 aa28.97■■■□□ 2.23
VPS28-212ENST00000530836 PER1O15534 1290 aaPredicted RBP28.96■■■□□ 2.23
VPS28-212ENST00000530836 ANKARQ7Z5J8 1434 aa28.96■■■□□ 2.23
VPS28-212ENST00000530836 FMN2Q9NZ56 1722 aa28.96■■■□□ 2.23
VPS28-212ENST00000530836 PRR36Q9H6K5 1346 aa28.95■■■□□ 2.22
VPS28-212ENST00000530836 SRPK2P78362 688 aaKnown RBP28.94■■■□□ 2.22
VPS28-212ENST00000530836 NUDT16Q96DE0 195 aaKnown RBP28.94■■■□□ 2.22
VPS28-212ENST00000530836 ROBO1Q9Y6N7 1651 aa28.94■■■□□ 2.22
VPS28-212ENST00000530836 MYOM1P52179 1685 aa28.93■■■□□ 2.22
VPS28-212ENST00000530836 TULP4Q9NRJ4 1543 aa28.93■■■□□ 2.22
VPS28-212ENST00000530836 CABP2Q9NPB3 220 aa28.92■■■□□ 2.22
VPS28-212ENST00000530836 HSPA1LP34931 641 aa28.91■■■□□ 2.22
VPS28-212ENST00000530836 NINLQ9Y2I6 1382 aa28.91■■■□□ 2.22
VPS28-212ENST00000530836 RALBP1Q15311 655 aa28.91■■■□□ 2.22
VPS28-212ENST00000530836 PHF8Q9UPP1 1060 aa28.89■■■□□ 2.22
VPS28-212ENST00000530836 CCDC61Q9Y6R9 512 aa28.89■■■□□ 2.22
VPS28-212ENST00000530836 KNSTRNQ9Y448 316 aa28.88■■■□□ 2.21
VPS28-212ENST00000530836 ATAD2Q6PL18 1390 aa28.88■■■□□ 2.21
VPS28-212ENST00000530836 ATP7BP35670 1465 aa28.87■■■□□ 2.21
VPS28-212ENST00000530836 USP32Q8NFA0 1604 aa28.86■■■□□ 2.21
VPS28-212ENST00000530836 FOXO3O43524 673 aa28.85■■■□□ 2.21
VPS28-212ENST00000530836 DDX17Q92841 729 aaKnown RBP28.85■■■□□ 2.21
VPS28-212ENST00000530836 PMFBP1Q8TBY8 1022 aa28.84■■■□□ 2.21
VPS28-212ENST00000530836 NPC1L1Q9UHC9 1359 aa28.83■■■□□ 2.21
VPS28-212ENST00000530836 NPHP3Q7Z494 1330 aa28.83■■■□□ 2.21
VPS28-212ENST00000530836 PLEKHG3A1L390 1219 aa28.82■■■□□ 2.2
VPS28-212ENST00000530836 AHDC1Q5TGY3 1603 aaPredicted RBP28.81■■■□□ 2.2
VPS28-212ENST00000530836 PARD3Q8TEW0 1356 aa28.8■■■□□ 2.2
VPS28-212ENST00000530836 TMC1Q8TDI8 760 aa28.8■■■□□ 2.2
VPS28-212ENST00000530836 RGPD8O14715 1765 aaPredicted RBP28.79■■■□□ 2.2
VPS28-212ENST00000530836 SOS2Q07890 1332 aaPredicted RBP28.79■■■□□ 2.2
VPS28-212ENST00000530836 CABP1Q9NZU7 370 aa28.79■■■□□ 2.2
VPS28-212ENST00000530836 MYBBP1AQ9BQG0 1328 aaKnown RBP28.77■■■□□ 2.2
VPS28-212ENST00000530836 NGDNQ8NEJ9 315 aaKnown RBP28.77■■■□□ 2.2
VPS28-212ENST00000530836 PPIP5K1Q6PFW1 1433 aa28.77■■■□□ 2.2
VPS28-212ENST00000530836 SLC12A5Q9H2X9 1139 aa28.76■■■□□ 2.2
VPS28-212ENST00000530836 ANKRD36BQ8N2N9 1353 aa28.76■■■□□ 2.19
VPS28-212ENST00000530836 KIF1AQ12756 1690 aa28.76■■■□□ 2.19
VPS28-212ENST00000530836 PSME1Q06323 249 aa28.76■■■□□ 2.19
VPS28-212ENST00000530836 AMER1Q5JTC6 1135 aaPredicted RBP28.76■■■□□ 2.19
VPS28-212ENST00000530836 YTHDC1Q96MU7 727 aaKnown RBP28.76■■■□□ 2.19
VPS28-212ENST00000530836 NHSL1Q5SYE7 1610 aa28.75■■■□□ 2.19
VPS28-212ENST00000530836 CENPBP07199 599 aaPredicted RBP28.75■■■□□ 2.19
VPS28-212ENST00000530836 XPCQ01831 940 aaPredicted RBP28.75■■■□□ 2.19
VPS28-212ENST00000530836 KRT28Q7Z3Y7 464 aa28.75■■■□□ 2.19
VPS28-212ENST00000530836 ACEP12821 1306 aa28.74■■■□□ 2.19
VPS28-212ENST00000530836 LRRC59Q96AG4 307 aaKnown RBP28.74■■■□□ 2.19
VPS28-212ENST00000530836 POLR3AO14802 1390 aaPredicted RBP28.73■■■□□ 2.19
Retrieved 100 of 20,778 RNA–protein pairs in 179.3 ms