RNA–Protein interactions for RNA: ENST00000526117.5

LMX1B-203, Transcript of LIM homeobox transcription factor 1 beta, humanhuman

TSL 1 (best) BASIC

Gene LMX1B, Length 1,195 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1B-203ENST00000526117 ADGRB2O60241 1585 aa24.8■■□□□ 1.56
LMX1B-203ENST00000526117 PLEKHH1Q9ULM0 1364 aa24.8■■□□□ 1.56
LMX1B-203ENST00000526117 WAPLQ7Z5K2 1190 aa24.78■■□□□ 1.56
LMX1B-203ENST00000526117 GPRASP1Q5JY77 1395 aa24.77■■□□□ 1.56
LMX1B-203ENST00000526117 PRAM1Q96QH2 718 aa24.76■■□□□ 1.55
LMX1B-203ENST00000526117 NBPF1Q3BBV0 1214 aa24.75■■□□□ 1.55
LMX1B-203ENST00000526117 SCAF1Q9H7N4 1312 aaKnown RBP24.75■■□□□ 1.55
LMX1B-203ENST00000526117 TRAK1Q9UPV9 953 aa24.74■■□□□ 1.55
LMX1B-203ENST00000526117 RALGAPBQ86X10 1494 aa24.74■■□□□ 1.55
LMX1B-203ENST00000526117 C1orf167Q5SNV9 1468 aa24.73■■□□□ 1.55
LMX1B-203ENST00000526117 NBPF8Q3BBV2 869 aa24.73■■□□□ 1.55
LMX1B-203ENST00000526117 FMN2Q9NZ56 1722 aa24.72■■□□□ 1.55
LMX1B-203ENST00000526117 CCER1Q8TC90 406 aaPredicted RBP24.72■■□□□ 1.55
LMX1B-203ENST00000526117 AHDC1Q5TGY3 1603 aaPredicted RBP24.72■■□□□ 1.55
LMX1B-203ENST00000526117 POGKQ9P215 609 aa24.71■■□□□ 1.55
LMX1B-203ENST00000526117 ROCK2O75116 1388 aaKnown RBP24.7■■□□□ 1.55
LMX1B-203ENST00000526117 HSPA1LP34931 641 aa24.69■■□□□ 1.54
LMX1B-203ENST00000526117 BRINP3Q76B58 766 aa24.67■■□□□ 1.54
LMX1B-203ENST00000526117 NHSL1Q5SYE7 1610 aa24.67■■□□□ 1.54
LMX1B-203ENST00000526117 ANKARQ7Z5J8 1434 aa24.65■■□□□ 1.54
LMX1B-203ENST00000526117 EIF3AQ14152 1382 aaKnown RBP24.65■■□□□ 1.54
LMX1B-203ENST00000526117 DISP3Q9P2K9 1392 aa24.65■■□□□ 1.54
LMX1B-203ENST00000526117 PHLPP1O60346 1717 aa24.64■■□□□ 1.53
LMX1B-203ENST00000526117 COL16A1Q07092 1604 aaPredicted RBP24.63■■□□□ 1.53
LMX1B-203ENST00000526117 CENPJQ9HC77 1338 aaPredicted RBP24.61■■□□□ 1.53
LMX1B-203ENST00000526117 TULP4Q9NRJ4 1543 aa24.61■■□□□ 1.53
LMX1B-203ENST00000526117 SAFB2Q14151 953 aaKnown RBP eCLIP24.61■■□□□ 1.53
LMX1B-203ENST00000526117 KIF1AQ12756 1690 aa24.6■■□□□ 1.53
LMX1B-203ENST00000526117 QRICH2Q9H0J4 1663 aa24.6■■□□□ 1.53
LMX1B-203ENST00000526117 WASLO00401 505 aaPredicted RBP24.59■■□□□ 1.53
LMX1B-203ENST00000526117 USP32Q8NFA0 1604 aa24.59■■□□□ 1.53
LMX1B-203ENST00000526117 MINK1Q8N4C8 1332 aaPredicted RBP24.58■■□□□ 1.52
LMX1B-203ENST00000526117 SBNO2Q9Y2G9 1366 aa24.57■■□□□ 1.52
LMX1B-203ENST00000526117 CARD11Q9BXL7 1154 aa24.57■■□□□ 1.52
LMX1B-203ENST00000526117 ORAI2Q96SN7 254 aa24.56■■□□□ 1.52
LMX1B-203ENST00000526117 HIRIP3Q9BW71 556 aaPredicted RBP24.54■■□□□ 1.52
LMX1B-203ENST00000526117 ATP7BP35670 1465 aa24.53■■□□□ 1.52
LMX1B-203ENST00000526117 ESCO1Q5FWF5 840 aa24.53■■□□□ 1.52
LMX1B-203ENST00000526117 SOS2Q07890 1332 aaPredicted RBP24.52■■□□□ 1.52
LMX1B-203ENST00000526117 NPHP3Q7Z494 1330 aa24.52■■□□□ 1.52
LMX1B-203ENST00000526117 SHPRHQ149N8 1683 aa24.52■■□□□ 1.52
LMX1B-203ENST00000526117 ITSN1Q15811 1721 aa24.52■■□□□ 1.52
LMX1B-203ENST00000526117 RGPD8O14715 1765 aaPredicted RBP24.52■■□□□ 1.52
LMX1B-203ENST00000526117 JCADQ9P266 1359 aa24.51■■□□□ 1.51
LMX1B-203ENST00000526117 PXDNQ92626 1479 aa24.51■■□□□ 1.51
LMX1B-203ENST00000526117 TOPAZ1Q8N9V7 1692 aa24.5■■□□□ 1.51
LMX1B-203ENST00000526117 PRR36Q9H6K5 1346 aa24.49■■□□□ 1.51
LMX1B-203ENST00000526117 ILDR2Q71H61 639 aa24.48■■□□□ 1.51
LMX1B-203ENST00000526117 CDK19Q9BWU1 502 aa24.48■■□□□ 1.51
LMX1B-203ENST00000526117 PHF8Q9UPP1 1060 aa24.48■■□□□ 1.51
LMX1B-203ENST00000526117 NUTM2FA1L443 756 aa24.47■■□□□ 1.51
LMX1B-203ENST00000526117 LRRC59Q96AG4 307 aaKnown RBP24.46■■□□□ 1.51
LMX1B-203ENST00000526117 MED1Q15648 1581 aaPredicted RBP24.45■■□□□ 1.5
LMX1B-203ENST00000526117 EVC2Q86UK5 1308 aa24.44■■□□□ 1.5
LMX1B-203ENST00000526117 SLC24A1O60721 1099 aa24.44■■□□□ 1.5
LMX1B-203ENST00000526117 NUDT16Q96DE0 195 aaKnown RBP24.44■■□□□ 1.5
LMX1B-203ENST00000526117 SPATA31A6Q5VVP1 1343 aa24.42■■□□□ 1.5
LMX1B-203ENST00000526117 FOXO3O43524 673 aa24.42■■□□□ 1.5
LMX1B-203ENST00000526117 DDX17Q92841 729 aaKnown RBP24.42■■□□□ 1.5
LMX1B-203ENST00000526117 CCDC61Q9Y6R9 512 aa24.42■■□□□ 1.5
LMX1B-203ENST00000526117 USP47Q96K76 1375 aa24.42■■□□□ 1.5
LMX1B-203ENST00000526117 COL22A1Q8NFW1 1626 aaPredicted RBP24.41■■□□□ 1.5
LMX1B-203ENST00000526117 POLR3AO14802 1390 aaPredicted RBP24.41■■□□□ 1.5
LMX1B-203ENST00000526117 PNPLA6Q8IY17 1366 aa24.4■■□□□ 1.5
LMX1B-203ENST00000526117 PLEKHG3A1L390 1219 aa24.39■■□□□ 1.49
LMX1B-203ENST00000526117 PUS7Q96PZ0 661 aaKnown RBP24.39■■□□□ 1.49
LMX1B-203ENST00000526117 SBNO1A3KN83 1393 aa24.39■■□□□ 1.49
LMX1B-203ENST00000526117 SRPK2P78362 688 aaKnown RBP24.38■■□□□ 1.49
LMX1B-203ENST00000526117 TESK2Q96S53 571 aa24.38■■□□□ 1.49
LMX1B-203ENST00000526117 PSME1Q06323 249 aa24.37■■□□□ 1.49
LMX1B-203ENST00000526117 TRPM3Q9HCF6 1732 aaPredicted RBP24.37■■□□□ 1.49
LMX1B-203ENST00000526117 ATAD2Q6PL18 1390 aa24.37■■□□□ 1.49
LMX1B-203ENST00000526117 ST20-MTHFSA0A0A6YYL1 179 aa24.36■■□□□ 1.49
LMX1B-203ENST00000526117 KRT28Q7Z3Y7 464 aa24.35■■□□□ 1.49
LMX1B-203ENST00000526117 PMFBP1Q8TBY8 1022 aa24.35■■□□□ 1.49
LMX1B-203ENST00000526117 CABP2Q9NPB3 220 aa24.35■■□□□ 1.49
LMX1B-203ENST00000526117 TNS3Q68CZ2 1445 aa24.35■■□□□ 1.49
LMX1B-203ENST00000526117 PPIP5K1Q6PFW1 1433 aa24.35■■□□□ 1.49
LMX1B-203ENST00000526117 SPATA31A3Q5VYP0 1347 aa24.35■■□□□ 1.49
LMX1B-203ENST00000526117 BRD4O60885 1362 aaPredicted RBP24.32■■□□□ 1.48
LMX1B-203ENST00000526117 ALS2Q96Q42 1657 aa24.31■■□□□ 1.48
LMX1B-203ENST00000526117 NGDNQ8NEJ9 315 aaKnown RBP24.31■■□□□ 1.48
LMX1B-203ENST00000526117 LRP6O75581 1613 aa24.31■■□□□ 1.48
LMX1B-203ENST00000526117 ARHGEF10O15013 1369 aa24.3■■□□□ 1.48
LMX1B-203ENST00000526117 ACEP12821 1306 aa24.3■■□□□ 1.48
LMX1B-203ENST00000526117 XPCQ01831 940 aaPredicted RBP24.29■■□□□ 1.48
LMX1B-203ENST00000526117 NINLQ9Y2I6 1382 aa24.27■■□□□ 1.48
LMX1B-203ENST00000526117 SOCS7O14512 581 aa24.26■■□□□ 1.47
LMX1B-203ENST00000526117 CABP1Q9NZU7 370 aa24.26■■□□□ 1.47
LMX1B-203ENST00000526117 AKAP12Q02952 1782 aa24.25■■□□□ 1.47
LMX1B-203ENST00000526117 CPSF1Q10570 1443 aaKnown RBP24.25■■□□□ 1.47
LMX1B-203ENST00000526117 TMF1P82094 1093 aa24.24■■□□□ 1.47
LMX1B-203ENST00000526117 USP6P35125 1406 aa24.24■■□□□ 1.47
LMX1B-203ENST00000526117 EIF4G2P78344 907 aaKnown RBP eCLIP24.23■■□□□ 1.47
LMX1B-203ENST00000526117 ZNF692Q9BU19 519 aaPredicted RBP24.23■■□□□ 1.47
LMX1B-203ENST00000526117 SSH2Q76I76 1423 aa24.23■■□□□ 1.47
LMX1B-203ENST00000526117 CDCA8Q53HL2 280 aa24.22■■□□□ 1.47
LMX1B-203ENST00000526117 ABCA3Q99758 1704 aa24.21■■□□□ 1.47
LMX1B-203ENST00000526117 CRYBG1Q9Y4K1 1723 aa24.2■■□□□ 1.46
LMX1B-203ENST00000526117 NRKQ7Z2Y5 1582 aa24.2■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms