RNA–Protein interactions for RNA: ENST00000526044.5

USP48-211, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 549 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-211ENST00000526044 LIAT1Q6ZQX7 453 aa8.95□□□□□ -0.98
USP48-211ENST00000526044 NUTM1Q86Y26 1132 aa8.95□□□□□ -0.98
USP48-211ENST00000526044 EMID1Q96A84 441 aaPredicted RBP8.95□□□□□ -0.98
USP48-211ENST00000526044 ADH1BP00325 375 aa8.94□□□□□ -0.98
USP48-211ENST00000526044 ATP6V1AP38606 617 aa8.94□□□□□ -0.98
USP48-211ENST00000526044 USP46P62068 366 aa8.94□□□□□ -0.98
USP48-211ENST00000526044 FUT2Q10981 343 aa8.94□□□□□ -0.98
USP48-211ENST00000526044 GRIPAP1Q4V328 841 aa8.94□□□□□ -0.98
USP48-211ENST00000526044 SLC6A16Q9GZN6 736 aa8.94□□□□□ -0.98
USP48-211ENST00000526044 GDF9O60383 454 aa8.92□□□□□ -0.98
USP48-211ENST00000526044 DIXDC1Q155Q3 683 aa8.92□□□□□ -0.98
USP48-211ENST00000526044 POTECB2RU33 542 aa8.91□□□□□ -0.98
USP48-211ENST00000526044 DDRGK1Q96HY6 314 aa8.91□□□□□ -0.98
USP48-211ENST00000526044 PUS10Q3MIT2 529 aaKnown RBP8.9□□□□□ -0.98
USP48-211ENST00000526044 TREML4Q6UXN2 200 aa8.9□□□□□ -0.98
USP48-211ENST00000526044 SPIRE2Q8WWL2 714 aa8.9□□□□□ -0.98
USP48-211ENST00000526044 FAM117AQ9C073 453 aa8.9□□□□□ -0.98
USP48-211ENST00000526044 MORN1Q5T089 497 aa8.89□□□□□ -0.99
USP48-211ENST00000526044 TBC1D2Q9BYX2 928 aa8.89□□□□□ -0.99
USP48-211ENST00000526044 CCDC180Q9P1Z9 1646 aa8.88□□□□□ -0.99
USP48-211ENST00000526044 HOXA2O43364 376 aa8.88□□□□□ -0.99
USP48-211ENST00000526044 FOXC1Q12948 553 aa8.88□□□□□ -0.99
USP48-211ENST00000526044 SCUBE3Q8IX30 993 aa8.88□□□□□ -0.99
USP48-211ENST00000526044 AAASQ9NRG9 546 aa8.88□□□□□ -0.99
USP48-211ENST00000526044 ST8SIA5O15466 376 aa8.87□□□□□ -0.99
USP48-211ENST00000526044 RSPH6AQ9H0K4 717 aa8.87□□□□□ -0.99
USP48-211ENST00000526044 SLC27A5Q9Y2P5 690 aa8.87□□□□□ -0.99
USP48-211ENST00000526044 IL27Q8NEV9 243 aa8.85□□□□□ -0.99
USP48-211ENST00000526044 SPSB2Q99619 263 aa8.85□□□□□ -0.99
USP48-211ENST00000526044 PLEKHG3A1L390 1219 aa8.84□□□□□ -0.99
USP48-211ENST00000526044 MOXD2PA6NHM9 499 aa8.84□□□□□ -0.99
USP48-211ENST00000526044 CD2BP2O95400 341 aaKnown RBP8.84□□□□□ -0.99
USP48-211ENST00000526044 NDUFV2P19404 249 aa8.84□□□□□ -0.99
USP48-211ENST00000526044 GJA5P36382 358 aa8.84□□□□□ -0.99
USP48-211ENST00000526044 Q3C1V9 767 aa8.84□□□□□ -0.99
USP48-211ENST00000526044 SALL2Q9Y467 1007 aaPredicted RBP8.84□□□□□ -0.99
USP48-211ENST00000526044 FDX1P10109 184 aa8.83□□□□□ -1
USP48-211ENST00000526044 RPIAP49247 311 aa8.83□□□□□ -1
USP48-211ENST00000526044 PLA2G2CQ5R387 149 aa8.83□□□□□ -1
USP48-211ENST00000526044 MYSM1Q5VVJ2 828 aa8.83□□□□□ -1
USP48-211ENST00000526044 CYP4X1Q8N118 509 aa8.83□□□□□ -1
USP48-211ENST00000526044 HLA-CQ95604 372 aa8.83□□□□□ -1
USP48-211ENST00000526044 AXIN1O15169 862 aa8.82□□□□□ -1
USP48-211ENST00000526044 SPTLC1O15269 473 aa8.82□□□□□ -1
USP48-211ENST00000526044 FMNL1O95466 1100 aaPredicted RBP8.82□□□□□ -1
USP48-211ENST00000526044 RSBN1LQ6PCB5 846 aaPredicted RBP8.82□□□□□ -1
USP48-211ENST00000526044 BRICD5Q6PL45 260 aa8.82□□□□□ -1
USP48-211ENST00000526044 RIC3Q7Z5B4 369 aa8.82□□□□□ -1
USP48-211ENST00000526044 C11orf95C9JLR9 678 aaPredicted RBP8.81□□□□□ -1
USP48-211ENST00000526044 GUCA2AQ02747 115 aa8.81□□□□□ -1
USP48-211ENST00000526044 CRIPAKQ8N1N5 446 aa8.81□□□□□ -1
USP48-211ENST00000526044 THAP11Q96EK4 314 aa8.81□□□□□ -1
USP48-211ENST00000526044 PKD2L1Q9P0L9 805 aa8.81□□□□□ -1
USP48-211ENST00000526044 WFS1O76024 890 aa8.8□□□□□ -1
USP48-211ENST00000526044 SKIV2LQ15477 1246 aaKnown RBP8.8□□□□□ -1
USP48-211ENST00000526044 CTC1Q2NKJ3 1217 aa8.8□□□□□ -1
USP48-211ENST00000526044 SH3D19Q5HYK7 790 aa8.8□□□□□ -1
USP48-211ENST00000526044 POLR3EQ9NVU0 708 aa8.8□□□□□ -1
USP48-211ENST00000526044 PCDHGC3Q9UN70 934 aa8.8□□□□□ -1
USP48-211ENST00000526044 ZBTB24O43167 697 aaPredicted RBP8.78□□□□□ -1
USP48-211ENST00000526044 AVPP01185 164 aa8.78□□□□□ -1
USP48-211ENST00000526044 CLK2P49760 499 aaKnown RBP8.78□□□□□ -1
USP48-211ENST00000526044 TUSC1Q2TAM9 212 aa8.78□□□□□ -1
USP48-211ENST00000526044 RNF19BQ6ZMZ0 732 aa8.78□□□□□ -1
USP48-211ENST00000526044 GOPCQ9HD26 462 aa8.78□□□□□ -1
USP48-211ENST00000526044 PCDHB15Q9Y5E8 787 aa8.78□□□□□ -1
USP48-211ENST00000526044 C6orf229H3BNL8 230 aa8.77□□□□□ -1.01
USP48-211ENST00000526044 USB1Q9BQ65 265 aaKnown RBP8.77□□□□□ -1.01
USP48-211ENST00000526044 TOR4AQ9NXH8 423 aa8.77□□□□□ -1.01
USP48-211ENST00000526044 GMPR2Q9P2T1 348 aaKnown RBP8.77□□□□□ -1.01
USP48-211ENST00000526044 LIMD1Q9UGP4 676 aa8.77□□□□□ -1.01
USP48-211ENST00000526044 FCF1Q9Y324 198 aaKnown RBP8.77□□□□□ -1.01
USP48-211ENST00000526044 TTC24A2A3L6 582 aaPredicted RBP8.76□□□□□ -1.01
USP48-211ENST00000526044 SPDYE5A6NIY4 337 aa8.76□□□□□ -1.01
USP48-211ENST00000526044 INSM1Q01101 510 aaPredicted RBP8.76□□□□□ -1.01
USP48-211ENST00000526044 LCE2AQ5TA79 106 aaPredicted RBP8.76□□□□□ -1.01
USP48-211ENST00000526044 PRPF38BQ5VTL8 546 aaKnown RBP8.76□□□□□ -1.01
USP48-211ENST00000526044 SYMPKQ92797 1274 aaKnown RBP8.76□□□□□ -1.01
USP48-211ENST00000526044 ATP1B4Q9UN42 357 aaPredicted RBP8.76□□□□□ -1.01
USP48-211ENST00000526044 MTMR2Q13614 643 aa8.75□□□□□ -1.01
USP48-211ENST00000526044 CSPP1Q1MSJ5 1256 aa8.75□□□□□ -1.01
USP48-211ENST00000526044 RETREG3Q86VR2 466 aa8.75□□□□□ -1.01
USP48-211ENST00000526044 FAM160A2Q8N612 972 aaPredicted RBP8.75□□□□□ -1.01
USP48-211ENST00000526044 STK17AQ9UEE5 414 aa8.75□□□□□ -1.01
USP48-211ENST00000526044 DACH1Q9UI36 760 aa8.75□□□□□ -1.01
USP48-211ENST00000526044 SMCPP49901 116 aaPredicted RBP8.74□□□□□ -1.01
USP48-211ENST00000526044 MSS51Q4VC12 460 aa8.74□□□□□ -1.01
USP48-211ENST00000526044 PCMTD1Q96MG8 357 aaPredicted RBP8.74□□□□□ -1.01
USP48-211ENST00000526044 ZBTB3Q9H5J0 574 aa8.74□□□□□ -1.01
USP48-211ENST00000526044 HRCP23327 699 aa8.73□□□□□ -1.01
USP48-211ENST00000526044 PROCA1Q8NCQ7 364 aaPredicted RBP8.73□□□□□ -1.01
USP48-211ENST00000526044 NUTM2BA6NNL0 878 aaPredicted RBP8.72□□□□□ -1.01
USP48-211ENST00000526044 NUTM2EB1AL46 878 aaPredicted RBP8.72□□□□□ -1.01
USP48-211ENST00000526044 LILRB3O75022 631 aa8.72□□□□□ -1.01
USP48-211ENST00000526044 NUTM2DQ5VT03 806 aaPredicted RBP8.72□□□□□ -1.01
USP48-211ENST00000526044 NUTM2AQ8IVF1 878 aaPredicted RBP8.72□□□□□ -1.01
USP48-211ENST00000526044 QPCTQ16769 361 aa8.71□□□□□ -1.02
USP48-211ENST00000526044 CABLES1Q8TDN4 633 aa8.71□□□□□ -1.02
USP48-211ENST00000526044 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.71□□□□□ -1.02
USP48-211ENST00000526044 PRR7Q8TB68 274 aa8.7□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms