RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 MYSM1Q5VVJ2 828 aa9.57□□□□□ -0.88
CD44-217ENST00000525348 RSBN1LQ6PCB5 846 aaPredicted RBP9.57□□□□□ -0.88
CD44-217ENST00000525348 SPTLC1O15269 473 aa9.56□□□□□ -0.88
CD44-217ENST00000525348 NEUROD2Q15784 382 aa9.56□□□□□ -0.88
CD44-217ENST00000525348 MSS51Q4VC12 460 aa9.56□□□□□ -0.88
CD44-217ENST00000525348 EMID1Q96A84 441 aaPredicted RBP9.56□□□□□ -0.88
CD44-217ENST00000525348 PCDHB15Q9Y5E8 787 aa9.56□□□□□ -0.88
CD44-217ENST00000525348 USB1Q9BQ65 265 aaKnown RBP9.55□□□□□ -0.88
CD44-217ENST00000525348 LIMD1Q9UGP4 676 aa9.55□□□□□ -0.88
CD44-217ENST00000525348 GGCXP38435 758 aa9.54□□□□□ -0.88
CD44-217ENST00000525348 PLA2G2CQ5R387 149 aa9.54□□□□□ -0.88
CD44-217ENST00000525348 RGS20O76081 388 aa9.53□□□□□ -0.88
CD44-217ENST00000525348 DIXDC1Q155Q3 683 aa9.53□□□□□ -0.88
CD44-217ENST00000525348 RIC3Q7Z5B4 369 aa9.53□□□□□ -0.88
CD44-217ENST00000525348 GJA5P36382 358 aa9.52□□□□□ -0.89
CD44-217ENST00000525348 ANKLE1Q8NAG6 615 aa9.52□□□□□ -0.89
CD44-217ENST00000525348 C6orf229H3BNL8 230 aa9.51□□□□□ -0.89
CD44-217ENST00000525348 RETREG3Q86VR2 466 aa9.51□□□□□ -0.89
CD44-217ENST00000525348 PRKD2Q9BZL6 878 aa9.51□□□□□ -0.89
CD44-217ENST00000525348 DXOO77932 396 aaKnown RBP9.5□□□□□ -0.89
CD44-217ENST00000525348 MMP16P51512 607 aa9.5□□□□□ -0.89
CD44-217ENST00000525348 CSPP1Q1MSJ5 1256 aa9.5□□□□□ -0.89
CD44-217ENST00000525348 CABLES1Q8TDN4 633 aa9.5□□□□□ -0.89
CD44-217ENST00000525348 DDRGK1Q96HY6 314 aa9.5□□□□□ -0.89
CD44-217ENST00000525348 POLR3EQ9NVU0 708 aa9.5□□□□□ -0.89
CD44-217ENST00000525348 FCF1Q9Y324 198 aaKnown RBP9.5□□□□□ -0.89
CD44-217ENST00000525348 QPCTQ16769 361 aa9.49□□□□□ -0.89
CD44-217ENST00000525348 LIAT1Q6ZQX7 453 aa9.49□□□□□ -0.89
CD44-217ENST00000525348 HRCP23327 699 aa9.48□□□□□ -0.89
CD44-217ENST00000525348 CLK2P49760 499 aaKnown RBP9.48□□□□□ -0.89
CD44-217ENST00000525348 MTMR2Q13614 643 aa9.48□□□□□ -0.89
CD44-217ENST00000525348 FBXO31Q5XUX0 539 aaPredicted RBP9.48□□□□□ -0.89
CD44-217ENST00000525348 JUNDP17535 347 aa9.47□□□□□ -0.89
CD44-217ENST00000525348 SH3D19Q5HYK7 790 aa9.47□□□□□ -0.89
CD44-217ENST00000525348 PROCA1Q8NCQ7 364 aaPredicted RBP9.47□□□□□ -0.89
CD44-217ENST00000525348 RSPH6AQ9H0K4 717 aa9.47□□□□□ -0.89
CD44-217ENST00000525348 CFAP99D6REC4 459 aa9.46□□□□□ -0.9
CD44-217ENST00000525348 TUSC1Q2TAM9 212 aa9.46□□□□□ -0.9
CD44-217ENST00000525348 IL27Q8NEV9 243 aa9.46□□□□□ -0.9
CD44-217ENST00000525348 PRR7Q8TB68 274 aa9.46□□□□□ -0.9
CD44-217ENST00000525348 LILRB3O75022 631 aa9.45□□□□□ -0.9
CD44-217ENST00000525348 SLC19A1P41440 591 aa9.45□□□□□ -0.9
CD44-217ENST00000525348 SKIV2LQ15477 1246 aaKnown RBP9.45□□□□□ -0.9
CD44-217ENST00000525348 PRPF38BQ5VTL8 546 aaKnown RBP9.45□□□□□ -0.9
CD44-217ENST00000525348 ZBTB3Q9H5J0 574 aa9.45□□□□□ -0.9
CD44-217ENST00000525348 V9GY48 417 aaPredicted RBP9.45□□□□□ -0.9
CD44-217ENST00000525348 RTL5Q5HYW3 569 aaPredicted RBP9.44□□□□□ -0.9
CD44-217ENST00000525348 SPDYE5A6NIY4 337 aa9.42□□□□□ -0.9
CD44-217ENST00000525348 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.42□□□□□ -0.9
CD44-217ENST00000525348 SPRYD7Q5W111 196 aa9.41□□□□□ -0.9
CD44-217ENST00000525348 DESI1Q6ICB0 168 aa9.4□□□□□ -0.9
CD44-217ENST00000525348 NUDT12Q9BQG2 462 aa9.4□□□□□ -0.9
CD44-217ENST00000525348 NUTM2BA6NNL0 878 aaPredicted RBP9.39□□□□□ -0.91
CD44-217ENST00000525348 NUTM2EB1AL46 878 aaPredicted RBP9.39□□□□□ -0.91
CD44-217ENST00000525348 NUTM2DQ5VT03 806 aaPredicted RBP9.39□□□□□ -0.91
CD44-217ENST00000525348 PTCRAQ6ISU1 281 aaPredicted RBP9.39□□□□□ -0.91
CD44-217ENST00000525348 NUTM2AQ8IVF1 878 aaPredicted RBP9.39□□□□□ -0.91
CD44-217ENST00000525348 CCDC24Q8N4L8 307 aa9.39□□□□□ -0.91
CD44-217ENST00000525348 PTPRNQ16849 979 aa9.38□□□□□ -0.91
CD44-217ENST00000525348 TRIM67Q6ZTA4 783 aa9.38□□□□□ -0.91
CD44-217ENST00000525348 PER1O15534 1290 aaPredicted RBP9.37□□□□□ -0.91
CD44-217ENST00000525348 RPIAP49247 311 aa9.37□□□□□ -0.91
CD44-217ENST00000525348 LYPD8Q6UX82 237 aa9.37□□□□□ -0.91
CD44-217ENST00000525348 ZNF598Q86UK7 904 aaKnown RBP9.37□□□□□ -0.91
CD44-217ENST00000525348 GOPCQ9HD26 462 aa9.37□□□□□ -0.91
CD44-217ENST00000525348 CCNYL3P0C7X3 344 aa9.36□□□□□ -0.91
CD44-217ENST00000525348 ZNF697Q5TEC3 545 aa9.36□□□□□ -0.91
CD44-217ENST00000525348 PPP2R2DQ66LE6 453 aa9.36□□□□□ -0.91
CD44-217ENST00000525348 TSC1Q92574 1164 aa9.35□□□□□ -0.91
CD44-217ENST00000525348 EVA1BQ9NVM1 165 aa9.35□□□□□ -0.91
CD44-217ENST00000525348 TRIM32Q13049 653 aa9.34□□□□□ -0.91
CD44-217ENST00000525348 IRX2Q9BZI1 471 aaPredicted RBP9.34□□□□□ -0.91
CD44-217ENST00000525348 F12P00748 615 aaPredicted RBP9.33□□□□□ -0.92
CD44-217ENST00000525348 PKD2L1Q9P0L9 805 aa9.33□□□□□ -0.92
CD44-217ENST00000525348 MAP10Q9P2G4 905 aa9.33□□□□□ -0.92
CD44-217ENST00000525348 ZBTB24O43167 697 aaPredicted RBP9.32□□□□□ -0.92
CD44-217ENST00000525348 GDF9O60383 454 aa9.32□□□□□ -0.92
CD44-217ENST00000525348 SKOR1P84550 965 aa9.32□□□□□ -0.92
CD44-217ENST00000525348 CTDSPL2Q05D32 466 aa9.32□□□□□ -0.92
CD44-217ENST00000525348 KCNH2Q12809 1159 aa9.32□□□□□ -0.92
CD44-217ENST00000525348 PCMTD1Q96MG8 357 aaPredicted RBP9.32□□□□□ -0.92
CD44-217ENST00000525348 ATP1B4Q9UN42 357 aaPredicted RBP9.32□□□□□ -0.92
CD44-217ENST00000525348 UNC93B1Q9H1C4 597 aa9.31□□□□□ -0.92
CD44-217ENST00000525348 TNFRSF10AO00220 468 aa9.3□□□□□ -0.92
CD44-217ENST00000525348 GFRA3O60609 400 aa9.3□□□□□ -0.92
CD44-217ENST00000525348 CD2BP2O95400 341 aaKnown RBP9.3□□□□□ -0.92
CD44-217ENST00000525348 RFC5P40937 340 aa9.3□□□□□ -0.92
CD44-217ENST00000525348 HELBQ8NG08 1087 aaPredicted RBP9.3□□□□□ -0.92
CD44-217ENST00000525348 PDZRN3Q9UPQ7 1066 aa9.3□□□□□ -0.92
CD44-217ENST00000525348 FOXC1Q12948 553 aa9.29□□□□□ -0.92
CD44-217ENST00000525348 LRRN4Q8WUT4 740 aa9.29□□□□□ -0.92
CD44-217ENST00000525348 CTHP32929 405 aa9.28□□□□□ -0.92
CD44-217ENST00000525348 PRR20EP86478 221 aa9.28□□□□□ -0.92
CD44-217ENST00000525348 PRR20CP86479 221 aa9.28□□□□□ -0.92
CD44-217ENST00000525348 PRR20DP86480 221 aa9.28□□□□□ -0.92
CD44-217ENST00000525348 PRR20BP86481 221 aa9.28□□□□□ -0.92
CD44-217ENST00000525348 PRR20AP86496 221 aa9.28□□□□□ -0.92
CD44-217ENST00000525348 AP1G2O75843 785 aa9.27□□□□□ -0.93
CD44-217ENST00000525348 LINC01559Q495D7 138 aa9.27□□□□□ -0.93
CD44-217ENST00000525348 BAP1Q92560 729 aa9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms