RNA–Protein interactions for RNA: ENST00000515289.2

NPHP3-211, Transcript of nephrocystin 3, humanhuman

TSL 3

Gene NPHP3, Length 556 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-211ENST00000515289 SEC24BO95487 1268 aa10.51□□□□□ -0.73
NPHP3-211ENST00000515289 FDX1P10109 184 aa10.51□□□□□ -0.73
NPHP3-211ENST00000515289 SEMA3FQ13275 785 aa10.51□□□□□ -0.73
NPHP3-211ENST00000515289 ATP9BO43861 1147 aa10.5□□□□□ -0.73
NPHP3-211ENST00000515289 TBC1D9Q6ZT07 1266 aa10.5□□□□□ -0.73
NPHP3-211ENST00000515289 NACADO15069 1562 aa10.49□□□□□ -0.73
NPHP3-211ENST00000515289 LRRN4Q8WUT4 740 aa10.49□□□□□ -0.73
NPHP3-211ENST00000515289 COLQQ9Y215 455 aaPredicted RBP10.49□□□□□ -0.73
NPHP3-211ENST00000515289 DNAJC14Q6Y2X3 702 aaPredicted RBP10.48□□□□□ -0.73
NPHP3-211ENST00000515289 RDH13Q8NBN7 331 aa10.48□□□□□ -0.73
NPHP3-211ENST00000515289 MTMR2Q13614 643 aa10.47□□□□□ -0.73
NPHP3-211ENST00000515289 KANK4Q5T7N3 995 aaPredicted RBP10.47□□□□□ -0.73
NPHP3-211ENST00000515289 NUDT18Q6ZVK8 323 aa10.47□□□□□ -0.73
NPHP3-211ENST00000515289 PCDHGC3Q9UN70 934 aa10.47□□□□□ -0.73
NPHP3-211ENST00000515289 NBPF26B4DH59 902 aa10.46□□□□□ -0.73
NPHP3-211ENST00000515289 GCGRP47871 477 aa10.46□□□□□ -0.73
NPHP3-211ENST00000515289 TMEM164Q5U3C3 297 aa10.46□□□□□ -0.73
NPHP3-211ENST00000515289 PNMA1Q8ND90 353 aa10.46□□□□□ -0.73
NPHP3-211ENST00000515289 MRRFQ96E11 262 aaKnown RBP10.46□□□□□ -0.73
NPHP3-211ENST00000515289 KIAA1522Q9P206 1035 aaPredicted RBP10.46□□□□□ -0.73
NPHP3-211ENST00000515289 ZMIZ1Q9ULJ6 1067 aa10.46□□□□□ -0.73
NPHP3-211ENST00000515289 EIF4G2P78344 907 aaKnown RBP eCLIP10.45□□□□□ -0.74
NPHP3-211ENST00000515289 TSKSQ9UJT2 592 aa10.45□□□□□ -0.74
NPHP3-211ENST00000515289 PHLDB3Q6NSJ2 640 aa10.44□□□□□ -0.74
NPHP3-211ENST00000515289 EPS8L1Q8TE68 723 aa10.44□□□□□ -0.74
NPHP3-211ENST00000515289 SIRT1Q96EB6 747 aa10.44□□□□□ -0.74
NPHP3-211ENST00000515289 CDK11BP21127 795 aaKnown RBP10.43□□□□□ -0.74
NPHP3-211ENST00000515289 ARID4AP29374 1257 aaPredicted RBP10.43□□□□□ -0.74
NPHP3-211ENST00000515289 SLF2Q8IX21 1173 aa10.43□□□□□ -0.74
NPHP3-211ENST00000515289 STK32AQ8WU08 396 aa10.43□□□□□ -0.74
NPHP3-211ENST00000515289 CDK11AQ9UQ88 783 aaPredicted RBP10.43□□□□□ -0.74
NPHP3-211ENST00000515289 CFAP99D6REC4 459 aa10.42□□□□□ -0.74
NPHP3-211ENST00000515289 C3orf80F5H4A9 247 aa10.42□□□□□ -0.74
NPHP3-211ENST00000515289 COL9A1P20849 921 aa10.42□□□□□ -0.74
NPHP3-211ENST00000515289 NFATC2IPQ8NCF5 419 aa10.42□□□□□ -0.74
NPHP3-211ENST00000515289 TSC1Q92574 1164 aa10.42□□□□□ -0.74
NPHP3-211ENST00000515289 TATDN2Q93075 761 aa10.42□□□□□ -0.74
NPHP3-211ENST00000515289 PNMA3Q9UL41 463 aa10.42□□□□□ -0.74
NPHP3-211ENST00000515289 NOVA2Q9UNW9 492 aaKnown RBP10.42□□□□□ -0.74
NPHP3-211ENST00000515289 ZNF16P17020 682 aaPredicted RBP10.4□□□□□ -0.74
NPHP3-211ENST00000515289 SSFA2P28290 1259 aa10.4□□□□□ -0.74
NPHP3-211ENST00000515289 GUCA2AQ02747 115 aa10.4□□□□□ -0.74
NPHP3-211ENST00000515289 SCRIBQ14160 1630 aa10.39□□□□□ -0.75
NPHP3-211ENST00000515289 SOWAHDA6NJG2 315 aa10.38□□□□□ -0.75
NPHP3-211ENST00000515289 PPP1R3GB7ZBB8 358 aa10.38□□□□□ -0.75
NPHP3-211ENST00000515289 PACS2Q86VP3 889 aa10.38□□□□□ -0.75
NPHP3-211ENST00000515289 HLA-CQ95604 372 aa10.38□□□□□ -0.75
NPHP3-211ENST00000515289 NR6A1Q15406 480 aa10.37□□□□□ -0.75
NPHP3-211ENST00000515289 PLEKHM2Q8IWE5 1019 aa10.37□□□□□ -0.75
NPHP3-211ENST00000515289 BCL2L13Q9BXK5 485 aa10.37□□□□□ -0.75
NPHP3-211ENST00000515289 USP17L3A6NCW0 530 aa10.36□□□□□ -0.75
NPHP3-211ENST00000515289 USP17L4A6NCW7 530 aa10.36□□□□□ -0.75
NPHP3-211ENST00000515289 FAM196BA6NMK8 535 aa10.36□□□□□ -0.75
NPHP3-211ENST00000515289 TRIM6-TRIM34B2RNG4 842 aa10.36□□□□□ -0.75
NPHP3-211ENST00000515289 NR1H3Q13133 447 aa10.36□□□□□ -0.75
NPHP3-211ENST00000515289 NOM1Q5C9Z4 860 aaKnown RBP10.36□□□□□ -0.75
NPHP3-211ENST00000515289 USP17L2Q6R6M4 530 aa10.36□□□□□ -0.75
NPHP3-211ENST00000515289 USP17L1Q7RTZ2 530 aa10.36□□□□□ -0.75
NPHP3-211ENST00000515289 RB1CC1Q8TDY2 1594 aa10.35□□□□□ -0.75
NPHP3-211ENST00000515289 POTEFA5A3E0 1075 aa10.35□□□□□ -0.75
NPHP3-211ENST00000515289 C6orf229H3BNL8 230 aa10.35□□□□□ -0.75
NPHP3-211ENST00000515289 NUDT7P0C024 238 aa10.35□□□□□ -0.75
NPHP3-211ENST00000515289 TCF3P15923 654 aa10.35□□□□□ -0.75
NPHP3-211ENST00000515289 SLC39A7Q92504 469 aa10.35□□□□□ -0.75
NPHP3-211ENST00000515289 BCL2L12Q9HB09 334 aa10.35□□□□□ -0.75
NPHP3-211ENST00000515289 PELP1Q8IZL8 1130 aaKnown RBP10.34□□□□□ -0.75
NPHP3-211ENST00000515289 FAM177A1Q8N128 213 aaPredicted RBP10.34□□□□□ -0.75
NPHP3-211ENST00000515289 CLP1Q92989 425 aaKnown RBP10.34□□□□□ -0.75
NPHP3-211ENST00000515289 PIK3CDO00329 1044 aa10.33□□□□□ -0.76
NPHP3-211ENST00000515289 MARSP56192 900 aaKnown RBP10.33□□□□□ -0.76
NPHP3-211ENST00000515289 USP17L5A8MUK1 530 aa10.32□□□□□ -0.76
NPHP3-211ENST00000515289 USP17L15C9J2P7 530 aa10.32□□□□□ -0.76
NPHP3-211ENST00000515289 USP17L10C9JJH3 530 aa10.32□□□□□ -0.76
NPHP3-211ENST00000515289 USP17L13C9JLJ4 530 aa10.32□□□□□ -0.76
NPHP3-211ENST00000515289 USP17L12C9JPN9 530 aa10.32□□□□□ -0.76
NPHP3-211ENST00000515289 USP17L11C9JVI0 530 aa10.32□□□□□ -0.76
NPHP3-211ENST00000515289 USP17L21D6R901 530 aa10.32□□□□□ -0.76
NPHP3-211ENST00000515289 USP17L18D6R9N7 530 aa10.32□□□□□ -0.76
NPHP3-211ENST00000515289 USP17L22D6RA61 530 aa10.32□□□□□ -0.76
NPHP3-211ENST00000515289 USP17L17D6RBQ6 530 aa10.32□□□□□ -0.76
NPHP3-211ENST00000515289 USP17L19D6RCP7 530 aa10.32□□□□□ -0.76
NPHP3-211ENST00000515289 USP17L20D6RJB6 530 aa10.32□□□□□ -0.76
NPHP3-211ENST00000515289 USP17L24Q0WX57 530 aa10.32□□□□□ -0.76
NPHP3-211ENST00000515289 GRIPAP1Q4V328 841 aa10.32□□□□□ -0.76
NPHP3-211ENST00000515289 PPP4R3BQ5MIZ7 849 aa10.32□□□□□ -0.76
NPHP3-211ENST00000515289 GIPC2Q8TF65 315 aa10.32□□□□□ -0.76
NPHP3-211ENST00000515289 C8orf37Q96NL8 207 aa10.32□□□□□ -0.76
NPHP3-211ENST00000515289 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.32□□□□□ -0.76
NPHP3-211ENST00000515289 SLAIN2Q9P270 581 aa10.32□□□□□ -0.76
NPHP3-211ENST00000515289 SLC10A3P09131 477 aa10.31□□□□□ -0.76
NPHP3-211ENST00000515289 PTPREP23469 700 aa10.31□□□□□ -0.76
NPHP3-211ENST00000515289 VAMP1P23763 118 aa10.31□□□□□ -0.76
NPHP3-211ENST00000515289 FAM69CQ0P6D2 419 aa10.31□□□□□ -0.76
NPHP3-211ENST00000515289 C7P10643 843 aa10.3□□□□□ -0.76
NPHP3-211ENST00000515289 SKIP12755 728 aa10.3□□□□□ -0.76
NPHP3-211ENST00000515289 CCDC125Q86Z20 511 aa10.3□□□□□ -0.76
NPHP3-211ENST00000515289 PER1O15534 1290 aaPredicted RBP10.29□□□□□ -0.76
NPHP3-211ENST00000515289 SERPINB4P48594 390 aa10.29□□□□□ -0.76
NPHP3-211ENST00000515289 CRTC2Q53ET0 693 aaPredicted RBP10.29□□□□□ -0.76
NPHP3-211ENST00000515289 NPAS4Q8IUM7 802 aa10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 73.1 ms