RNA–Protein interactions for RNA: ENST00000505659.1

HMGB1P29-201, Transcript of high mobility group box 1 pseudogene 29, humanhuman

BASIC

Gene HMGB1P29, Length 499 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P29-201ENST00000505659 Q3C1V9 767 aa8.23□□□□□ -1.09
HMGB1P29-201ENST00000505659 SALL2Q9Y467 1007 aaPredicted RBP8.23□□□□□ -1.09
HMGB1P29-201ENST00000505659 MSS51Q4VC12 460 aa8.21□□□□□ -1.1
HMGB1P29-201ENST00000505659 RSBN1LQ6PCB5 846 aaPredicted RBP8.21□□□□□ -1.1
HMGB1P29-201ENST00000505659 ANKLE1Q8NAG6 615 aa8.21□□□□□ -1.1
HMGB1P29-201ENST00000505659 USB1Q9BQ65 265 aaKnown RBP8.21□□□□□ -1.1
HMGB1P29-201ENST00000505659 FAM117AQ9C073 453 aa8.21□□□□□ -1.1
HMGB1P29-201ENST00000505659 C6orf229H3BNL8 230 aa8.2□□□□□ -1.1
HMGB1P29-201ENST00000505659 MYSM1Q5VVJ2 828 aa8.2□□□□□ -1.1
HMGB1P29-201ENST00000505659 FCF1Q9Y324 198 aaKnown RBP8.2□□□□□ -1.1
HMGB1P29-201ENST00000505659 PCDHB15Q9Y5E8 787 aa8.2□□□□□ -1.1
HMGB1P29-201ENST00000505659 CSPP1Q1MSJ5 1256 aa8.19□□□□□ -1.1
HMGB1P29-201ENST00000505659 LIAT1Q6ZQX7 453 aa8.19□□□□□ -1.1
HMGB1P29-201ENST00000505659 LIMD1Q9UGP4 676 aa8.19□□□□□ -1.1
HMGB1P29-201ENST00000505659 SPTLC1O15269 473 aa8.18□□□□□ -1.1
HMGB1P29-201ENST00000505659 PLEKHG3A1L390 1219 aa8.17□□□□□ -1.1
HMGB1P29-201ENST00000505659 DXOO77932 396 aaKnown RBP8.17□□□□□ -1.1
HMGB1P29-201ENST00000505659 MMP16P51512 607 aa8.17□□□□□ -1.1
HMGB1P29-201ENST00000505659 NEUROD2Q15784 382 aa8.17□□□□□ -1.1
HMGB1P29-201ENST00000505659 RIC3Q7Z5B4 369 aa8.17□□□□□ -1.1
HMGB1P29-201ENST00000505659 RETREG3Q86VR2 466 aa8.17□□□□□ -1.1
HMGB1P29-201ENST00000505659 CABLES1Q8TDN4 633 aa8.17□□□□□ -1.1
HMGB1P29-201ENST00000505659 SLC19A1P41440 591 aa8.16□□□□□ -1.1
HMGB1P29-201ENST00000505659 BRPF1P55201 1214 aaPredicted RBP8.16□□□□□ -1.1
HMGB1P29-201ENST00000505659 POLR3EQ9NVU0 708 aa8.16□□□□□ -1.1
HMGB1P29-201ENST00000505659 V9GY48 417 aaPredicted RBP8.16□□□□□ -1.1
HMGB1P29-201ENST00000505659 DIXDC1Q155Q3 683 aa8.15□□□□□ -1.1
HMGB1P29-201ENST00000505659 QPCTQ16769 361 aa8.15□□□□□ -1.1
HMGB1P29-201ENST00000505659 JUNDP17535 347 aa8.14□□□□□ -1.11
HMGB1P29-201ENST00000505659 MTMR2Q13614 643 aa8.14□□□□□ -1.11
HMGB1P29-201ENST00000505659 PRR7Q8TB68 274 aa8.14□□□□□ -1.11
HMGB1P29-201ENST00000505659 CFAP99D6REC4 459 aa8.13□□□□□ -1.11
HMGB1P29-201ENST00000505659 HRCP23327 699 aa8.13□□□□□ -1.11
HMGB1P29-201ENST00000505659 GJA5P36382 358 aa8.13□□□□□ -1.11
HMGB1P29-201ENST00000505659 CLK2P49760 499 aaKnown RBP8.13□□□□□ -1.11
HMGB1P29-201ENST00000505659 SPRYD7Q5W111 196 aa8.13□□□□□ -1.11
HMGB1P29-201ENST00000505659 CCDC24Q8N4L8 307 aa8.12□□□□□ -1.11
HMGB1P29-201ENST00000505659 IRX2Q9BZI1 471 aaPredicted RBP8.12□□□□□ -1.11
HMGB1P29-201ENST00000505659 FBXO31Q5XUX0 539 aaPredicted RBP8.11□□□□□ -1.11
HMGB1P29-201ENST00000505659 TRIM67Q6ZTA4 783 aa8.11□□□□□ -1.11
HMGB1P29-201ENST00000505659 DDRGK1Q96HY6 314 aa8.11□□□□□ -1.11
HMGB1P29-201ENST00000505659 ZBTB3Q9H5J0 574 aa8.11□□□□□ -1.11
HMGB1P29-201ENST00000505659 ZNF697Q5TEC3 545 aa8.1□□□□□ -1.11
HMGB1P29-201ENST00000505659 PROCA1Q8NCQ7 364 aaPredicted RBP8.1□□□□□ -1.11
HMGB1P29-201ENST00000505659 IL27Q8NEV9 243 aa8.1□□□□□ -1.11
HMGB1P29-201ENST00000505659 LILRB3O75022 631 aa8.09□□□□□ -1.11
HMGB1P29-201ENST00000505659 SH3D19Q5HYK7 790 aa8.09□□□□□ -1.11
HMGB1P29-201ENST00000505659 RTL5Q5HYW3 569 aaPredicted RBP8.09□□□□□ -1.11
HMGB1P29-201ENST00000505659 RSPH6AQ9H0K4 717 aa8.09□□□□□ -1.11
HMGB1P29-201ENST00000505659 SPDYE5A6NIY4 337 aa8.08□□□□□ -1.12
HMGB1P29-201ENST00000505659 PRPF38BQ5VTL8 546 aaKnown RBP8.08□□□□□ -1.12
HMGB1P29-201ENST00000505659 PTCRAQ6ISU1 281 aaPredicted RBP8.08□□□□□ -1.12
HMGB1P29-201ENST00000505659 ZNF598Q86UK7 904 aaKnown RBP8.08□□□□□ -1.12
HMGB1P29-201ENST00000505659 NUDT12Q9BQG2 462 aa8.08□□□□□ -1.12
HMGB1P29-201ENST00000505659 NUTM2BA6NNL0 878 aaPredicted RBP8.07□□□□□ -1.12
HMGB1P29-201ENST00000505659 NUTM2EB1AL46 878 aaPredicted RBP8.07□□□□□ -1.12
HMGB1P29-201ENST00000505659 TNFRSF10AO00220 468 aa8.07□□□□□ -1.12
HMGB1P29-201ENST00000505659 GFRA3O60609 400 aa8.07□□□□□ -1.12
HMGB1P29-201ENST00000505659 RPIAP49247 311 aa8.07□□□□□ -1.12
HMGB1P29-201ENST00000505659 SKIV2LQ15477 1246 aaKnown RBP8.07□□□□□ -1.12
HMGB1P29-201ENST00000505659 TUSC1Q2TAM9 212 aa8.07□□□□□ -1.12
HMGB1P29-201ENST00000505659 NUTM2DQ5VT03 806 aaPredicted RBP8.07□□□□□ -1.12
HMGB1P29-201ENST00000505659 NUTM2AQ8IVF1 878 aaPredicted RBP8.07□□□□□ -1.12
HMGB1P29-201ENST00000505659 TSC1Q92574 1164 aa8.07□□□□□ -1.12
HMGB1P29-201ENST00000505659 PER1O15534 1290 aaPredicted RBP8.06□□□□□ -1.12
HMGB1P29-201ENST00000505659 CCNYL3P0C7X3 344 aa8.06□□□□□ -1.12
HMGB1P29-201ENST00000505659 FOXC1Q12948 553 aa8.06□□□□□ -1.12
HMGB1P29-201ENST00000505659 TRIM32Q13049 653 aa8.06□□□□□ -1.12
HMGB1P29-201ENST00000505659 PDZRN3Q9UPQ7 1066 aa8.06□□□□□ -1.12
HMGB1P29-201ENST00000505659 ZBTB24O43167 697 aaPredicted RBP8.05□□□□□ -1.12
HMGB1P29-201ENST00000505659 PTPRNQ16849 979 aa8.05□□□□□ -1.12
HMGB1P29-201ENST00000505659 PKD2L1Q9P0L9 805 aa8.05□□□□□ -1.12
HMGB1P29-201ENST00000505659 GDF9O60383 454 aa8.04□□□□□ -1.12
HMGB1P29-201ENST00000505659 DESI1Q6ICB0 168 aa8.04□□□□□ -1.12
HMGB1P29-201ENST00000505659 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.04□□□□□ -1.12
HMGB1P29-201ENST00000505659 ATP1B4Q9UN42 357 aaPredicted RBP8.04□□□□□ -1.12
HMGB1P29-201ENST00000505659 SKOR1P84550 965 aa8.03□□□□□ -1.12
HMGB1P29-201ENST00000505659 LYPD8Q6UX82 237 aa8.03□□□□□ -1.12
HMGB1P29-201ENST00000505659 MAP10Q9P2G4 905 aa8.03□□□□□ -1.12
HMGB1P29-201ENST00000505659 CD2BP2O95400 341 aaKnown RBP8.02□□□□□ -1.13
HMGB1P29-201ENST00000505659 EVA1BQ9NVM1 165 aa8.02□□□□□ -1.13
HMGB1P29-201ENST00000505659 NRG2O14511 850 aaPredicted RBP8.01□□□□□ -1.13
HMGB1P29-201ENST00000505659 LCE2BO14633 110 aa8.01□□□□□ -1.13
HMGB1P29-201ENST00000505659 KCNH2Q12809 1159 aa8.01□□□□□ -1.13
HMGB1P29-201ENST00000505659 LINC01559Q495D7 138 aa8.01□□□□□ -1.13
HMGB1P29-201ENST00000505659 UNC93B1Q9H1C4 597 aa8.01□□□□□ -1.13
HMGB1P29-201ENST00000505659 F12P00748 615 aaPredicted RBP8□□□□□ -1.13
HMGB1P29-201ENST00000505659 CTHP32929 405 aa8□□□□□ -1.13
HMGB1P29-201ENST00000505659 Q6ZNB5 142 aa8□□□□□ -1.13
HMGB1P29-201ENST00000505659 PRR20EP86478 221 aa7.99□□□□□ -1.13
HMGB1P29-201ENST00000505659 PRR20CP86479 221 aa7.99□□□□□ -1.13
HMGB1P29-201ENST00000505659 PRR20DP86480 221 aa7.99□□□□□ -1.13
HMGB1P29-201ENST00000505659 PRR20BP86481 221 aa7.99□□□□□ -1.13
HMGB1P29-201ENST00000505659 PRR20AP86496 221 aa7.99□□□□□ -1.13
HMGB1P29-201ENST00000505659 CTDSPL2Q05D32 466 aa7.99□□□□□ -1.13
HMGB1P29-201ENST00000505659 PPP2R2DQ66LE6 453 aa7.98□□□□□ -1.13
HMGB1P29-201ENST00000505659 HELBQ8NG08 1087 aaPredicted RBP7.98□□□□□ -1.13
HMGB1P29-201ENST00000505659 LRRN4Q8WUT4 740 aa7.98□□□□□ -1.13
HMGB1P29-201ENST00000505659 BAP1Q92560 729 aa7.98□□□□□ -1.13
HMGB1P29-201ENST00000505659 PCMTD1Q96MG8 357 aaPredicted RBP7.98□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms