RNA–Protein interactions for RNA: ENST00000492996.6

HERC4-211, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 1 (best) BASIC

Gene HERC4, Length 3,385 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-211ENST00000492996 SLIT3O75094 1523 aa10.19□□□□□ -0.78
HERC4-211ENST00000492996 BCL9O00512 1426 aa10.18□□□□□ -0.78
HERC4-211ENST00000492996 RAB3GAP2Q9H2M9 1393 aa10.18□□□□□ -0.78
HERC4-211ENST00000492996 TULP4Q9NRJ4 1543 aa10.18□□□□□ -0.78
HERC4-211ENST00000492996 WASHC2CQ9Y4E1 1318 aa10.18□□□□□ -0.78
HERC4-211ENST00000492996 YTHDC1Q96MU7 727 aaKnown RBP10.17□□□□□ -0.78
HERC4-211ENST00000492996 ARID4BQ4LE39 1312 aaPredicted RBP10.17□□□□□ -0.78
HERC4-211ENST00000492996 LRPPRCP42704 1394 aaKnown RBP10.17□□□□□ -0.78
HERC4-211ENST00000492996 ATRNO75882 1429 aa10.16□□□□□ -0.78
HERC4-211ENST00000492996 SOCS7O14512 581 aa10.16□□□□□ -0.78
HERC4-211ENST00000492996 NEUROD1Q13562 356 aa10.15□□□□□ -0.78
HERC4-211ENST00000492996 MIER1Q8N108 512 aa10.15□□□□□ -0.78
HERC4-211ENST00000492996 CLSPNQ9HAW4 1339 aa10.15□□□□□ -0.78
HERC4-211ENST00000492996 JCADQ9P266 1359 aa10.15□□□□□ -0.78
HERC4-211ENST00000492996 SBNO1A3KN83 1393 aa10.14□□□□□ -0.79
HERC4-211ENST00000492996 GTF3C3Q9Y5Q9 886 aa10.14□□□□□ -0.79
HERC4-211ENST00000492996 NCKAP5LQ9HCH0 1330 aa10.14□□□□□ -0.79
HERC4-211ENST00000492996 EIF3AQ14152 1382 aaKnown RBP10.14□□□□□ -0.79
HERC4-211ENST00000492996 CENPBP07199 599 aaPredicted RBP10.14□□□□□ -0.79
HERC4-211ENST00000492996 KIF3BO15066 747 aa10.13□□□□□ -0.79
HERC4-211ENST00000492996 NUP155O75694 1391 aa10.12□□□□□ -0.79
HERC4-211ENST00000492996 SLIT2O94813 1529 aa10.12□□□□□ -0.79
HERC4-211ENST00000492996 TOM1O60784 492 aa10.12□□□□□ -0.79
HERC4-211ENST00000492996 SIN3AQ96ST3 1273 aa10.12□□□□□ -0.79
HERC4-211ENST00000492996 C1orf167Q5SNV9 1468 aa10.12□□□□□ -0.79
HERC4-211ENST00000492996 ZNF335Q9H4Z2 1342 aaPredicted RBP10.11□□□□□ -0.79
HERC4-211ENST00000492996 LTKP29376 864 aa10.1□□□□□ -0.79
HERC4-211ENST00000492996 CEBPAP49715 358 aaPredicted RBP10.09□□□□□ -0.79
HERC4-211ENST00000492996 ESF1Q9H501 851 aaKnown RBP10.09□□□□□ -0.79
HERC4-211ENST00000492996 CASZ1Q86V15 1759 aa10.09□□□□□ -0.79
HERC4-211ENST00000492996 SBNO2Q9Y2G9 1366 aa10.09□□□□□ -0.79
HERC4-211ENST00000492996 PIK3C2AO00443 1686 aa10.07□□□□□ -0.8
HERC4-211ENST00000492996 SOS2Q07890 1332 aaPredicted RBP10.07□□□□□ -0.8
HERC4-211ENST00000492996 PAPPAQ13219 1627 aa10.07□□□□□ -0.8
HERC4-211ENST00000492996 CHIC2Q9UKJ5 165 aa10.07□□□□□ -0.8
HERC4-211ENST00000492996 MSH6P52701 1360 aa10.07□□□□□ -0.8
HERC4-211ENST00000492996 GPRASP1Q5JY77 1395 aa10.07□□□□□ -0.8
HERC4-211ENST00000492996 NUP188Q5SRE5 1749 aa10.07□□□□□ -0.8
HERC4-211ENST00000492996 TMEM94Q12767 1356 aa10.06□□□□□ -0.8
HERC4-211ENST00000492996 IDI1Q13907 227 aa10.06□□□□□ -0.8
HERC4-211ENST00000492996 BRWD3Q6RI45 1802 aa10.06□□□□□ -0.8
HERC4-211ENST00000492996 PNPLA6Q8IY17 1366 aa10.06□□□□□ -0.8
HERC4-211ENST00000492996 RGPD8O14715 1765 aaPredicted RBP10.06□□□□□ -0.8
HERC4-211ENST00000492996 EID1Q9Y6B2 187 aa10.05□□□□□ -0.8
HERC4-211ENST00000492996 SBF2Q86WG5 1849 aa10.05□□□□□ -0.8
HERC4-211ENST00000492996 ERICH6Q7L0X2 663 aa10.05□□□□□ -0.8
HERC4-211ENST00000492996 HSPA2P54652 639 aa10.04□□□□□ -0.8
HERC4-211ENST00000492996 FBXO31Q5XUX0 539 aaPredicted RBP10.04□□□□□ -0.8
HERC4-211ENST00000492996 RRP7BPQ9NSQ0 103 aa10.04□□□□□ -0.8
HERC4-211ENST00000492996 PUS7Q96PZ0 661 aaKnown RBP10.04□□□□□ -0.8
HERC4-211ENST00000492996 POLR3AO14802 1390 aaPredicted RBP10.03□□□□□ -0.8
HERC4-211ENST00000492996 SSH2Q76I76 1423 aa10.03□□□□□ -0.8
HERC4-211ENST00000492996 NHSQ6T4R5 1651 aa10.02□□□□□ -0.81
HERC4-211ENST00000492996 HIRIP3Q9BW71 556 aaPredicted RBP10.02□□□□□ -0.81
HERC4-211ENST00000492996 CFAP65Q6ZU64 1925 aaKnown RBP10.01□□□□□ -0.81
HERC4-211ENST00000492996 SHANK3Q9BYB0 1731 aa10□□□□□ -0.81
HERC4-211ENST00000492996 YTHDC2Q9H6S0 1430 aaKnown RBP10□□□□□ -0.81
HERC4-211ENST00000492996 RALGAPBQ86X10 1494 aa9.99□□□□□ -0.81
HERC4-211ENST00000492996 LRRC37A3O60309 1634 aa9.99□□□□□ -0.81
HERC4-211ENST00000492996 TRIM52Q96A61 297 aa9.99□□□□□ -0.81
HERC4-211ENST00000492996 AATKQ6ZMQ8 1374 aa9.98□□□□□ -0.81
HERC4-211ENST00000492996 NCAPD2Q15021 1401 aa9.98□□□□□ -0.81
HERC4-211ENST00000492996 C19orf44Q9H6X5 657 aa9.98□□□□□ -0.81
HERC4-211ENST00000492996 METP08581 1390 aa9.98□□□□□ -0.81
HERC4-211ENST00000492996 ADAMTS7Q9UKP4 1686 aa9.98□□□□□ -0.81
HERC4-211ENST00000492996 PKD1L3Q7Z443 1732 aa9.97□□□□□ -0.81
HERC4-211ENST00000492996 ONECUT3O60422 494 aaPredicted RBP9.97□□□□□ -0.81
HERC4-211ENST00000492996 CADPS2Q86UW7 1296 aa9.97□□□□□ -0.81
HERC4-211ENST00000492996 TNS3Q68CZ2 1445 aa9.96□□□□□ -0.81
HERC4-211ENST00000492996 CPDO75976 1380 aa9.96□□□□□ -0.81
HERC4-211ENST00000492996 LY75O60449 1722 aa9.96□□□□□ -0.82
HERC4-211ENST00000492996 NFAT5O94916 1531 aa9.96□□□□□ -0.82
HERC4-211ENST00000492996 DDX10Q13206 875 aaKnown RBP9.95□□□□□ -0.82
HERC4-211ENST00000492996 GGT6Q6P531 493 aa9.95□□□□□ -0.82
HERC4-211ENST00000492996 BCL9LQ86UU0 1499 aa9.95□□□□□ -0.82
HERC4-211ENST00000492996 RGS17Q9UGC6 210 aaPredicted RBP9.95□□□□□ -0.82
HERC4-211ENST00000492996 PPP1R15AO75807 674 aaPredicted RBP9.95□□□□□ -0.82
HERC4-211ENST00000492996 TXNDC2Q86VQ3 553 aa9.95□□□□□ -0.82
HERC4-211ENST00000492996 MYOM1P52179 1685 aa9.95□□□□□ -0.82
HERC4-211ENST00000492996 TONSLQ96HA7 1378 aa9.95□□□□□ -0.82
HERC4-211ENST00000492996 KIF20BQ96Q89 1820 aa9.94□□□□□ -0.82
HERC4-211ENST00000492996 PARD3Q8TEW0 1356 aa9.94□□□□□ -0.82
HERC4-211ENST00000492996 FNBP4Q8N3X1 1017 aaPredicted RBP9.94□□□□□ -0.82
HERC4-211ENST00000492996 ZNF777Q9ULD5 760 aaPredicted RBP9.94□□□□□ -0.82
HERC4-211ENST00000492996 C14orf93Q9H972 538 aaKnown RBP9.94□□□□□ -0.82
HERC4-211ENST00000492996 ROBO2Q9HCK4 1378 aa9.93□□□□□ -0.82
HERC4-211ENST00000492996 FOXD1Q16676 465 aa9.93□□□□□ -0.82
HERC4-211ENST00000492996 VGFO15240 615 aaPredicted RBP9.92□□□□□ -0.82
HERC4-211ENST00000492996 RGS12O14924 1447 aa9.92□□□□□ -0.82
HERC4-211ENST00000492996 ARHGEF10O15013 1369 aa9.91□□□□□ -0.82
HERC4-211ENST00000492996 CCDC125Q86Z20 511 aa9.91□□□□□ -0.82
HERC4-211ENST00000492996 NINLQ9Y2I6 1382 aa9.91□□□□□ -0.82
HERC4-211ENST00000492996 C11orf95C9JLR9 678 aaPredicted RBP9.9□□□□□ -0.82
HERC4-211ENST00000492996 HSPA1LP34931 641 aa9.9□□□□□ -0.82
HERC4-211ENST00000492996 TIMELESSQ9UNS1 1208 aa9.9□□□□□ -0.82
HERC4-211ENST00000492996 USP19O94966 1318 aa9.89□□□□□ -0.83
HERC4-211ENST00000492996 USP31Q70CQ4 1352 aa9.89□□□□□ -0.83
HERC4-211ENST00000492996 KIF13BQ9NQT8 1826 aa9.89□□□□□ -0.83
HERC4-211ENST00000492996 MLECQ14165 292 aa9.88□□□□□ -0.83
HERC4-211ENST00000492996 ZNF772Q68DY9 489 aaPredicted RBP9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms