RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 MST1RQ04912 1400 aa23.39■■□□□ 1.33
MSH5-SAPCD1-206ENST00000491552 TRPM1Q7Z4N2 1603 aa23.38■■□□□ 1.33
MSH5-SAPCD1-206ENST00000491552 HSPA1LP34931 641 aa23.37■■□□□ 1.33
MSH5-SAPCD1-206ENST00000491552 PRAM1Q96QH2 718 aa23.37■■□□□ 1.33
MSH5-SAPCD1-206ENST00000491552 ARHGEF28Q8N1W1 1705 aaKnown RBP23.36■■□□□ 1.33
MSH5-SAPCD1-206ENST00000491552 NBPF1Q3BBV0 1214 aa23.36■■□□□ 1.33
MSH5-SAPCD1-206ENST00000491552 POGKQ9P215 609 aa23.35■■□□□ 1.33
MSH5-SAPCD1-206ENST00000491552 SAFB2Q14151 953 aaKnown RBP eCLIP23.33■■□□□ 1.33
MSH5-SAPCD1-206ENST00000491552 CCER1Q8TC90 406 aaPredicted RBP23.33■■□□□ 1.33
MSH5-SAPCD1-206ENST00000491552 C1orf167Q5SNV9 1468 aa23.32■■□□□ 1.32
MSH5-SAPCD1-206ENST00000491552 NBPF8Q3BBV2 869 aa23.31■■□□□ 1.32
MSH5-SAPCD1-206ENST00000491552 ADGRB2O60241 1585 aa23.31■■□□□ 1.32
MSH5-SAPCD1-206ENST00000491552 ROCK2O75116 1388 aaKnown RBP23.3■■□□□ 1.32
MSH5-SAPCD1-206ENST00000491552 BRINP3Q76B58 766 aa23.3■■□□□ 1.32
MSH5-SAPCD1-206ENST00000491552 FMN2Q9NZ56 1722 aa23.29■■□□□ 1.32
MSH5-SAPCD1-206ENST00000491552 AHDC1Q5TGY3 1603 aaPredicted RBP23.28■■□□□ 1.32
MSH5-SAPCD1-206ENST00000491552 PHLPP1O60346 1717 aa23.28■■□□□ 1.32
MSH5-SAPCD1-206ENST00000491552 RALGAPBQ86X10 1494 aa23.26■■□□□ 1.31
MSH5-SAPCD1-206ENST00000491552 MINK1Q8N4C8 1332 aaPredicted RBP23.25■■□□□ 1.31
MSH5-SAPCD1-206ENST00000491552 GPRASP1Q5JY77 1395 aa23.25■■□□□ 1.31
MSH5-SAPCD1-206ENST00000491552 NHSL1Q5SYE7 1610 aa23.24■■□□□ 1.31
MSH5-SAPCD1-206ENST00000491552 HIRIP3Q9BW71 556 aaPredicted RBP23.23■■□□□ 1.31
MSH5-SAPCD1-206ENST00000491552 TIMELESSQ9UNS1 1208 aa23.23■■□□□ 1.31
MSH5-SAPCD1-206ENST00000491552 COL16A1Q07092 1604 aaPredicted RBP23.22■■□□□ 1.31
MSH5-SAPCD1-206ENST00000491552 NUTM2FA1L443 756 aa23.22■■□□□ 1.31
MSH5-SAPCD1-206ENST00000491552 ORAI2Q96SN7 254 aa23.22■■□□□ 1.31
MSH5-SAPCD1-206ENST00000491552 CENPJQ9HC77 1338 aaPredicted RBP23.2■■□□□ 1.3
MSH5-SAPCD1-206ENST00000491552 QRICH2Q9H0J4 1663 aa23.19■■□□□ 1.3
MSH5-SAPCD1-206ENST00000491552 EIF3AQ14152 1382 aaKnown RBP23.19■■□□□ 1.3
MSH5-SAPCD1-206ENST00000491552 ESCO1Q5FWF5 840 aa23.19■■□□□ 1.3
MSH5-SAPCD1-206ENST00000491552 TULP4Q9NRJ4 1543 aa23.18■■□□□ 1.3
MSH5-SAPCD1-206ENST00000491552 ANKARQ7Z5J8 1434 aa23.18■■□□□ 1.3
MSH5-SAPCD1-206ENST00000491552 WASLO00401 505 aaPredicted RBP23.18■■□□□ 1.3
MSH5-SAPCD1-206ENST00000491552 CARD11Q9BXL7 1154 aa23.18■■□□□ 1.3
MSH5-SAPCD1-206ENST00000491552 KIF1AQ12756 1690 aa23.17■■□□□ 1.3
MSH5-SAPCD1-206ENST00000491552 USP32Q8NFA0 1604 aa23.17■■□□□ 1.3
MSH5-SAPCD1-206ENST00000491552 DDX17Q92841 729 aaKnown RBP23.16■■□□□ 1.3
MSH5-SAPCD1-206ENST00000491552 RGPD8O14715 1765 aaPredicted RBP23.15■■□□□ 1.3
MSH5-SAPCD1-206ENST00000491552 JCADQ9P266 1359 aa23.14■■□□□ 1.29
MSH5-SAPCD1-206ENST00000491552 NPHP3Q7Z494 1330 aa23.12■■□□□ 1.29
MSH5-SAPCD1-206ENST00000491552 PRR36Q9H6K5 1346 aa23.1■■□□□ 1.29
MSH5-SAPCD1-206ENST00000491552 SHPRHQ149N8 1683 aa23.1■■□□□ 1.29
MSH5-SAPCD1-206ENST00000491552 CDK19Q9BWU1 502 aa23.1■■□□□ 1.29
MSH5-SAPCD1-206ENST00000491552 PHF8Q9UPP1 1060 aa23.1■■□□□ 1.29
MSH5-SAPCD1-206ENST00000491552 ATP7BP35670 1465 aa23.1■■□□□ 1.29
MSH5-SAPCD1-206ENST00000491552 MED1Q15648 1581 aaPredicted RBP23.1■■□□□ 1.29
MSH5-SAPCD1-206ENST00000491552 SOS2Q07890 1332 aaPredicted RBP23.09■■□□□ 1.29
MSH5-SAPCD1-206ENST00000491552 ITSN1Q15811 1721 aa23.09■■□□□ 1.29
MSH5-SAPCD1-206ENST00000491552 FOXO3O43524 673 aa23.09■■□□□ 1.29
MSH5-SAPCD1-206ENST00000491552 PXDNQ92626 1479 aa23.09■■□□□ 1.29
MSH5-SAPCD1-206ENST00000491552 LRRC59Q96AG4 307 aaKnown RBP23.08■■□□□ 1.29
MSH5-SAPCD1-206ENST00000491552 NUDT16Q96DE0 195 aaKnown RBP23.06■■□□□ 1.28
MSH5-SAPCD1-206ENST00000491552 TOPAZ1Q8N9V7 1692 aa23.06■■□□□ 1.28
MSH5-SAPCD1-206ENST00000491552 SBNO2Q9Y2G9 1366 aa23.05■■□□□ 1.28
MSH5-SAPCD1-206ENST00000491552 SRPK2P78362 688 aaKnown RBP23.04■■□□□ 1.28
MSH5-SAPCD1-206ENST00000491552 XPCQ01831 940 aaPredicted RBP23.04■■□□□ 1.28
MSH5-SAPCD1-206ENST00000491552 PMFBP1Q8TBY8 1022 aa23.04■■□□□ 1.28
MSH5-SAPCD1-206ENST00000491552 EVC2Q86UK5 1308 aa23.04■■□□□ 1.28
MSH5-SAPCD1-206ENST00000491552 SPATA31A6Q5VVP1 1343 aa23.03■■□□□ 1.28
MSH5-SAPCD1-206ENST00000491552 PNPLA6Q8IY17 1366 aa23.02■■□□□ 1.28
MSH5-SAPCD1-206ENST00000491552 KRT28Q7Z3Y7 464 aa23.01■■□□□ 1.27
MSH5-SAPCD1-206ENST00000491552 CABP2Q9NPB3 220 aa23.01■■□□□ 1.27
MSH5-SAPCD1-206ENST00000491552 CCDC61Q9Y6R9 512 aa23■■□□□ 1.27
MSH5-SAPCD1-206ENST00000491552 USP47Q96K76 1375 aa23■■□□□ 1.27
MSH5-SAPCD1-206ENST00000491552 PSME1Q06323 249 aa22.99■■□□□ 1.27
MSH5-SAPCD1-206ENST00000491552 DISP3Q9P2K9 1392 aa22.99■■□□□ 1.27
MSH5-SAPCD1-206ENST00000491552 NGDNQ8NEJ9 315 aaKnown RBP22.98■■□□□ 1.27
MSH5-SAPCD1-206ENST00000491552 COL22A1Q8NFW1 1626 aaPredicted RBP22.97■■□□□ 1.27
MSH5-SAPCD1-206ENST00000491552 ST20-MTHFSA0A0A6YYL1 179 aa22.97■■□□□ 1.27
MSH5-SAPCD1-206ENST00000491552 SBNO1A3KN83 1393 aa22.97■■□□□ 1.27
MSH5-SAPCD1-206ENST00000491552 PPIP5K1Q6PFW1 1433 aa22.97■■□□□ 1.27
MSH5-SAPCD1-206ENST00000491552 LRP6O75581 1613 aa22.97■■□□□ 1.27
MSH5-SAPCD1-206ENST00000491552 SPATA31A3Q5VYP0 1347 aa22.96■■□□□ 1.27
MSH5-SAPCD1-206ENST00000491552 TNS3Q68CZ2 1445 aa22.96■■□□□ 1.27
MSH5-SAPCD1-206ENST00000491552 PLEKHG3A1L390 1219 aa22.95■■□□□ 1.26
MSH5-SAPCD1-206ENST00000491552 POLR3AO14802 1390 aaPredicted RBP22.95■■□□□ 1.26
MSH5-SAPCD1-206ENST00000491552 TRPM3Q9HCF6 1732 aaPredicted RBP22.95■■□□□ 1.26
MSH5-SAPCD1-206ENST00000491552 ATAD2Q6PL18 1390 aa22.93■■□□□ 1.26
MSH5-SAPCD1-206ENST00000491552 NUTM2BA6NNL0 878 aaPredicted RBP22.93■■□□□ 1.26
MSH5-SAPCD1-206ENST00000491552 NUTM2EB1AL46 878 aaPredicted RBP22.93■■□□□ 1.26
MSH5-SAPCD1-206ENST00000491552 NUTM2AQ8IVF1 878 aaPredicted RBP22.93■■□□□ 1.26
MSH5-SAPCD1-206ENST00000491552 TESK2Q96S53 571 aa22.93■■□□□ 1.26
MSH5-SAPCD1-206ENST00000491552 ACEP12821 1306 aa22.92■■□□□ 1.26
MSH5-SAPCD1-206ENST00000491552 PHF23Q9BUL5 403 aaPredicted RBP22.92■■□□□ 1.26
MSH5-SAPCD1-206ENST00000491552 SLC24A1O60721 1099 aa22.91■■□□□ 1.26
MSH5-SAPCD1-206ENST00000491552 ARHGEF10O15013 1369 aa22.9■■□□□ 1.26
MSH5-SAPCD1-206ENST00000491552 MEX3CQ5U5Q3 659 aaKnown RBP22.9■■□□□ 1.26
MSH5-SAPCD1-206ENST00000491552 CABP1Q9NZU7 370 aa22.89■■□□□ 1.25
MSH5-SAPCD1-206ENST00000491552 ALS2Q96Q42 1657 aa22.89■■□□□ 1.25
MSH5-SAPCD1-206ENST00000491552 LMOD2Q6P5Q4 547 aa22.87■■□□□ 1.25
MSH5-SAPCD1-206ENST00000491552 PAK3O75914 559 aaPredicted RBP22.86■■□□□ 1.25
MSH5-SAPCD1-206ENST00000491552 PUS7Q96PZ0 661 aaKnown RBP22.86■■□□□ 1.25
MSH5-SAPCD1-206ENST00000491552 TMF1P82094 1093 aa22.84■■□□□ 1.25
MSH5-SAPCD1-206ENST00000491552 USP6P35125 1406 aa22.83■■□□□ 1.25
MSH5-SAPCD1-206ENST00000491552 BRD4O60885 1362 aaPredicted RBP22.83■■□□□ 1.25
MSH5-SAPCD1-206ENST00000491552 AKAP12Q02952 1782 aa22.83■■□□□ 1.24
MSH5-SAPCD1-206ENST00000491552 ABCA3Q99758 1704 aa22.82■■□□□ 1.24
MSH5-SAPCD1-206ENST00000491552 ADAMTS2O95450 1211 aa22.82■■□□□ 1.24
MSH5-SAPCD1-206ENST00000491552 EIF4G2P78344 907 aaKnown RBP eCLIP22.82■■□□□ 1.24
MSH5-SAPCD1-206ENST00000491552 RGS17Q9UGC6 210 aaPredicted RBP22.8■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms