RNA–Protein interactions for RNA: ENST00000482563.1

RBM39-233, Transcript of RNA binding motif protein 39, humanhuman

TSL 2

Gene RBM39, Length 1,737 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RBM39-233ENST00000482563 MS4A3Q96HJ5 214 aa10.7□□□□□ -0.7
RBM39-233ENST00000482563 NOVA2Q9UNW9 492 aaKnown RBP10.7□□□□□ -0.7
RBM39-233ENST00000482563 ANKRD62A6NC57 917 aa10.69□□□□□ -0.7
RBM39-233ENST00000482563 ZNF662Q6ZS27 426 aa10.69□□□□□ -0.7
RBM39-233ENST00000482563 FBXO33Q7Z6M2 555 aa10.69□□□□□ -0.7
RBM39-233ENST00000482563 NUTM1Q86Y26 1132 aa10.69□□□□□ -0.7
RBM39-233ENST00000482563 ZRANB1Q9UGI0 708 aa10.69□□□□□ -0.7
RBM39-233ENST00000482563 NCLP19338 710 aaKnown RBP10.68□□□□□ -0.7
RBM39-233ENST00000482563 SOX11P35716 441 aa10.68□□□□□ -0.7
RBM39-233ENST00000482563 PRPF38BQ5VTL8 546 aaKnown RBP10.68□□□□□ -0.7
RBM39-233ENST00000482563 HIRIP3Q9BW71 556 aaPredicted RBP10.68□□□□□ -0.7
RBM39-233ENST00000482563 SCNN1AP37088 669 aa10.67□□□□□ -0.7
RBM39-233ENST00000482563 FAM69CQ0P6D2 419 aa10.67□□□□□ -0.7
RBM39-233ENST00000482563 SLAIN1Q8ND83 568 aa10.67□□□□□ -0.7
RBM39-233ENST00000482563 LRRN4Q8WUT4 740 aa10.67□□□□□ -0.7
RBM39-233ENST00000482563 ZNF326Q5BKZ1 582 aaKnown RBP10.67□□□□□ -0.7
RBM39-233ENST00000482563 BOLA1Q9Y3E2 137 aa10.67□□□□□ -0.7
RBM39-233ENST00000482563 SF3A1Q15459 793 aaKnown RBP10.66□□□□□ -0.7
RBM39-233ENST00000482563 CERS3Q8IU89 383 aa10.66□□□□□ -0.7
RBM39-233ENST00000482563 PTCD2Q8WV60 388 aaKnown RBP10.66□□□□□ -0.7
RBM39-233ENST00000482563 SEMA3FQ13275 785 aa10.65□□□□□ -0.7
RBM39-233ENST00000482563 KDM4AO75164 1064 aa10.64□□□□□ -0.71
RBM39-233ENST00000482563 PIK3CDO00329 1044 aa10.64□□□□□ -0.71
RBM39-233ENST00000482563 DPH6Q7L8W6 267 aa10.64□□□□□ -0.71
RBM39-233ENST00000482563 TIE1P35590 1138 aa10.63□□□□□ -0.71
RBM39-233ENST00000482563 BIN2Q9UBW5 565 aaPredicted RBP10.63□□□□□ -0.71
RBM39-233ENST00000482563 ZBTB3Q9H5J0 574 aa10.62□□□□□ -0.71
RBM39-233ENST00000482563 CRTC2Q53ET0 693 aaPredicted RBP10.61□□□□□ -0.71
RBM39-233ENST00000482563 TYW1BQ6NUM6 668 aa10.61□□□□□ -0.71
RBM39-233ENST00000482563 BMP2KQ9NSY1 1161 aaPredicted RBP10.61□□□□□ -0.71
RBM39-233ENST00000482563 TRIM35Q9UPQ4 493 aa10.61□□□□□ -0.71
RBM39-233ENST00000482563 RCCD1A6NED2 376 aa10.6□□□□□ -0.71
RBM39-233ENST00000482563 CLP1Q92989 425 aaKnown RBP10.6□□□□□ -0.71
RBM39-233ENST00000482563 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.59□□□□□ -0.71
RBM39-233ENST00000482563 TSNAXIP1Q2TAA8 658 aa10.59□□□□□ -0.71
RBM39-233ENST00000482563 RBM46Q8TBY0 533 aaKnown RBP10.59□□□□□ -0.71
RBM39-233ENST00000482563 RBM27Q9P2N5 1060 aaKnown RBP10.59□□□□□ -0.71
RBM39-233ENST00000482563 PCDHGC3Q9UN70 934 aa10.59□□□□□ -0.71
RBM39-233ENST00000482563 DDX11L8A8MPP1 907 aa10.58□□□□□ -0.72
RBM39-233ENST00000482563 ARID4BQ4LE39 1312 aaPredicted RBP10.58□□□□□ -0.72
RBM39-233ENST00000482563 USP17L3A6NCW0 530 aa10.58□□□□□ -0.72
RBM39-233ENST00000482563 USP17L4A6NCW7 530 aa10.58□□□□□ -0.72
RBM39-233ENST00000482563 ERCC5P28715 1186 aaPredicted RBP10.58□□□□□ -0.72
RBM39-233ENST00000482563 USP17L2Q6R6M4 530 aa10.58□□□□□ -0.72
RBM39-233ENST00000482563 USP17L1Q7RTZ2 530 aa10.58□□□□□ -0.72
RBM39-233ENST00000482563 CERKQ8TCT0 537 aa10.57□□□□□ -0.72
RBM39-233ENST00000482563 FAM196BA6NMK8 535 aa10.56□□□□□ -0.72
RBM39-233ENST00000482563 USP17L15C9J2P7 530 aa10.56□□□□□ -0.72
RBM39-233ENST00000482563 USP17L10C9JJH3 530 aa10.56□□□□□ -0.72
RBM39-233ENST00000482563 USP17L13C9JLJ4 530 aa10.56□□□□□ -0.72
RBM39-233ENST00000482563 USP17L12C9JPN9 530 aa10.56□□□□□ -0.72
RBM39-233ENST00000482563 USP17L11C9JVI0 530 aa10.56□□□□□ -0.72
RBM39-233ENST00000482563 USP17L21D6R901 530 aa10.56□□□□□ -0.72
RBM39-233ENST00000482563 USP17L18D6R9N7 530 aa10.56□□□□□ -0.72
RBM39-233ENST00000482563 USP17L22D6RA61 530 aa10.56□□□□□ -0.72
RBM39-233ENST00000482563 USP17L17D6RBQ6 530 aa10.56□□□□□ -0.72
RBM39-233ENST00000482563 USP17L19D6RCP7 530 aa10.56□□□□□ -0.72
RBM39-233ENST00000482563 USP17L20D6RJB6 530 aa10.56□□□□□ -0.72
RBM39-233ENST00000482563 FXR2P51116 673 aaKnown RBP eCLIP10.56□□□□□ -0.72
RBM39-233ENST00000482563 USP17L24Q0WX57 530 aa10.56□□□□□ -0.72
RBM39-233ENST00000482563 ATP2B4P23634 1241 aa10.55□□□□□ -0.72
RBM39-233ENST00000482563 HDLBPQ00341 1268 aaKnown RBP10.55□□□□□ -0.72
RBM39-233ENST00000482563 C6orf132Q5T0Z8 1188 aa10.55□□□□□ -0.72
RBM39-233ENST00000482563 C9orf131Q5VYM1 1079 aa10.55□□□□□ -0.72
RBM39-233ENST00000482563 LHX8Q68G74 356 aa10.55□□□□□ -0.72
RBM39-233ENST00000482563 FAM9AQ8IZU1 332 aaPredicted RBP10.55□□□□□ -0.72
RBM39-233ENST00000482563 BACH2Q9BYV9 841 aa10.55□□□□□ -0.72
RBM39-233ENST00000482563 EVX2Q03828 476 aa10.55□□□□□ -0.72
RBM39-233ENST00000482563 EYA1Q99502 592 aa10.55□□□□□ -0.72
RBM39-233ENST00000482563 FAM198AQ9UFP1 575 aa10.55□□□□□ -0.72
RBM39-233ENST00000482563 LDLRAD1Q5T700 205 aa10.54□□□□□ -0.72
RBM39-233ENST00000482563 SULF1Q8IWU6 871 aa10.54□□□□□ -0.72
RBM39-233ENST00000482563 CFAP99D6REC4 459 aa10.53□□□□□ -0.72
RBM39-233ENST00000482563 MARCH6O60337 910 aa10.53□□□□□ -0.72
RBM39-233ENST00000482563 CD44P16070 742 aaKnown RBP10.53□□□□□ -0.72
RBM39-233ENST00000482563 RAD51AP2Q09MP3 1159 aa10.53□□□□□ -0.72
RBM39-233ENST00000482563 PTK7Q13308 1070 aa10.53□□□□□ -0.72
RBM39-233ENST00000482563 PIK3R5Q8WYR1 880 aa10.53□□□□□ -0.72
RBM39-233ENST00000482563 PPP1R3GB7ZBB8 358 aa10.53□□□□□ -0.72
RBM39-233ENST00000482563 FDX1P10109 184 aa10.53□□□□□ -0.72
RBM39-233ENST00000482563 IRX5P78411 483 aaPredicted RBP10.53□□□□□ -0.72
RBM39-233ENST00000482563 GUCA2AQ02747 115 aa10.53□□□□□ -0.72
RBM39-233ENST00000482563 DEPDC4Q8N2C3 294 aa10.53□□□□□ -0.72
RBM39-233ENST00000482563 HLA-CQ95604 372 aa10.53□□□□□ -0.72
RBM39-233ENST00000482563 LNPKQ9C0E8 428 aa10.53□□□□□ -0.72
RBM39-233ENST00000482563 USP17L5A8MUK1 530 aa10.52□□□□□ -0.73
RBM39-233ENST00000482563 HOXA2O43364 376 aa10.52□□□□□ -0.73
RBM39-233ENST00000482563 PRSS12P56730 875 aa10.52□□□□□ -0.73
RBM39-233ENST00000482563 NR6A1Q15406 480 aa10.52□□□□□ -0.73
RBM39-233ENST00000482563 PLEKHM2Q8IWE5 1019 aa10.52□□□□□ -0.73
RBM39-233ENST00000482563 NFATC2IPQ8NCF5 419 aa10.52□□□□□ -0.73
RBM39-233ENST00000482563 DNAJC2Q99543 621 aaKnown RBP10.52□□□□□ -0.73
RBM39-233ENST00000482563 EIF4G2P78344 907 aaKnown RBP eCLIP10.51□□□□□ -0.73
RBM39-233ENST00000482563 FAM174AQ8TBP5 190 aa10.51□□□□□ -0.73
RBM39-233ENST00000482563 MRPL58Q14197 206 aaKnown RBP10.5□□□□□ -0.73
RBM39-233ENST00000482563 HELBQ8NG08 1087 aaPredicted RBP10.5□□□□□ -0.73
RBM39-233ENST00000482563 C3orf80F5H4A9 247 aa10.5□□□□□ -0.73
RBM39-233ENST00000482563 ECM1Q16610 540 aa10.5□□□□□ -0.73
RBM39-233ENST00000482563 NOL8Q76FK4 1167 aaKnown RBP10.5□□□□□ -0.73
RBM39-233ENST00000482563 TSC1Q92574 1164 aa10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 69.2 ms