RNA–Protein interactions for RNA: ENST00000482158.1

SF3B1-210, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 772 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-210ENST00000482158 NUTM2BA6NNL0 878 aaPredicted RBP11.61□□□□□ -0.55
SF3B1-210ENST00000482158 NUTM2EB1AL46 878 aaPredicted RBP11.61□□□□□ -0.55
SF3B1-210ENST00000482158 NUTM2DQ5VT03 806 aaPredicted RBP11.61□□□□□ -0.55
SF3B1-210ENST00000482158 NUTM2AQ8IVF1 878 aaPredicted RBP11.61□□□□□ -0.55
SF3B1-210ENST00000482158 SYMPKQ92797 1274 aaKnown RBP11.61□□□□□ -0.55
SF3B1-210ENST00000482158 SLC27A5Q9Y2P5 690 aa11.61□□□□□ -0.55
SF3B1-210ENST00000482158 MTMR2Q13614 643 aa11.6□□□□□ -0.55
SF3B1-210ENST00000482158 SPDYE5A6NIY4 337 aa11.59□□□□□ -0.55
SF3B1-210ENST00000482158 KCTD12Q96CX2 325 aaKnown RBP11.59□□□□□ -0.55
SF3B1-210ENST00000482158 PRR14Q9BWN1 585 aa11.59□□□□□ -0.55
SF3B1-210ENST00000482158 CFAP99D6REC4 459 aa11.58□□□□□ -0.56
SF3B1-210ENST00000482158 C6orf229H3BNL8 230 aa11.57□□□□□ -0.56
SF3B1-210ENST00000482158 AP1G2O75843 785 aa11.57□□□□□ -0.56
SF3B1-210ENST00000482158 MTMR14Q8NCE2 650 aa11.57□□□□□ -0.56
SF3B1-210ENST00000482158 CLUAP1Q96AJ1 413 aa11.56□□□□□ -0.56
SF3B1-210ENST00000482158 CTDSPL2Q05D32 466 aa11.55□□□□□ -0.56
SF3B1-210ENST00000482158 BLOC1S3Q6QNY0 202 aa11.55□□□□□ -0.56
SF3B1-210ENST00000482158 RNF19BQ6ZMZ0 732 aa11.55□□□□□ -0.56
SF3B1-210ENST00000482158 POM121Q96HA1 1249 aa11.55□□□□□ -0.56
SF3B1-210ENST00000482158 PCDHB3Q9Y5E6 796 aa11.55□□□□□ -0.56
SF3B1-210ENST00000482158 SUPT5HO00267 1087 aaKnown RBP11.54□□□□□ -0.56
SF3B1-210ENST00000482158 USP17L8P0C7I0 530 aa11.54□□□□□ -0.56
SF3B1-210ENST00000482158 UBTFP17480 764 aaKnown RBP11.54□□□□□ -0.56
SF3B1-210ENST00000482158 MMRN1Q13201 1228 aa11.54□□□□□ -0.56
SF3B1-210ENST00000482158 SCUBE3Q8IX30 993 aa11.54□□□□□ -0.56
SF3B1-210ENST00000482158 THAP11Q96EK4 314 aa11.54□□□□□ -0.56
SF3B1-210ENST00000482158 A6NJR5 290 aa11.53□□□□□ -0.56
SF3B1-210ENST00000482158 BRICD5Q6PL45 260 aa11.53□□□□□ -0.56
SF3B1-210ENST00000482158 Q3C1V9 767 aa11.52□□□□□ -0.57
SF3B1-210ENST00000482158 RETREG3Q86VR2 466 aa11.52□□□□□ -0.57
SF3B1-210ENST00000482158 PRR7Q8TB68 274 aa11.52□□□□□ -0.57
SF3B1-210ENST00000482158 SALL2Q9Y467 1007 aaPredicted RBP11.52□□□□□ -0.57
SF3B1-210ENST00000482158 SOCS7O14512 581 aa11.51□□□□□ -0.57
SF3B1-210ENST00000482158 COG6Q9Y2V7 657 aa11.51□□□□□ -0.57
SF3B1-210ENST00000482158 GJD4Q96KN9 370 aaPredicted RBP11.5□□□□□ -0.57
SF3B1-210ENST00000482158 HMX1Q9NP08 348 aaPredicted RBP11.5□□□□□ -0.57
SF3B1-210ENST00000482158 NR1I2O75469 434 aa11.48□□□□□ -0.57
SF3B1-210ENST00000482158 PTPN5P54829 565 aa11.48□□□□□ -0.57
SF3B1-210ENST00000482158 LRRN4Q8WUT4 740 aa11.48□□□□□ -0.57
SF3B1-210ENST00000482158 PER1O15534 1290 aaPredicted RBP11.47□□□□□ -0.57
SF3B1-210ENST00000482158 FNBP4Q8N3X1 1017 aaPredicted RBP11.47□□□□□ -0.57
SF3B1-210ENST00000482158 HELBQ8NG08 1087 aaPredicted RBP11.47□□□□□ -0.57
SF3B1-210ENST00000482158 TSC1Q92574 1164 aa11.47□□□□□ -0.57
SF3B1-210ENST00000482158 USB1Q9BQ65 265 aaKnown RBP11.47□□□□□ -0.57
SF3B1-210ENST00000482158 MYT1LQ9UL68 1186 aa11.47□□□□□ -0.57
SF3B1-210ENST00000482158 FMNL1O95466 1100 aaPredicted RBP11.46□□□□□ -0.57
SF3B1-210ENST00000482158 COPS2P61201 443 aa11.46□□□□□ -0.57
SF3B1-210ENST00000482158 DESI1Q6ICB0 168 aa11.46□□□□□ -0.57
SF3B1-210ENST00000482158 NYAP1Q6ZVC0 841 aa11.46□□□□□ -0.57
SF3B1-210ENST00000482158 TRIM34Q9BYJ4 488 aa11.46□□□□□ -0.57
SF3B1-210ENST00000482158 TRAK2O60296 914 aa11.45□□□□□ -0.58
SF3B1-210ENST00000482158 SPNS2Q8IVW8 549 aa11.45□□□□□ -0.58
SF3B1-210ENST00000482158 GPR37L1O60883 481 aa11.44□□□□□ -0.58
SF3B1-210ENST00000482158 FAM160A2Q8N612 972 aaPredicted RBP11.44□□□□□ -0.58
SF3B1-210ENST00000482158 GDPD2Q9HCC8 539 aa11.44□□□□□ -0.58
SF3B1-210ENST00000482158 TJAP1Q5JTD0 557 aa11.43□□□□□ -0.58
SF3B1-210ENST00000482158 PROSER2Q86WR7 435 aaPredicted RBP11.43□□□□□ -0.58
SF3B1-210ENST00000482158 EPS8L1Q8TE68 723 aa11.43□□□□□ -0.58
SF3B1-210ENST00000482158 MTRQ99707 1265 aa11.43□□□□□ -0.58
SF3B1-210ENST00000482158 C1orf115Q9H7X2 142 aa11.43□□□□□ -0.58
SF3B1-210ENST00000482158 TBC1D2BQ9UPU7 963 aa11.43□□□□□ -0.58
SF3B1-210ENST00000482158 RAD21O60216 631 aa11.42□□□□□ -0.58
SF3B1-210ENST00000482158 LYPD8Q6UX82 237 aa11.42□□□□□ -0.58
SF3B1-210ENST00000482158 SPSB2Q99619 263 aa11.41□□□□□ -0.58
SF3B1-210ENST00000482158 TLL1O43897 1013 aa11.4□□□□□ -0.58
SF3B1-210ENST00000482158 ZPR1O75312 459 aa11.4□□□□□ -0.58
SF3B1-210ENST00000482158 ZNF516Q92618 1163 aa11.4□□□□□ -0.58
SF3B1-210ENST00000482158 ARID3CA6NKF2 412 aa11.39□□□□□ -0.59
SF3B1-210ENST00000482158 MSS51Q4VC12 460 aa11.39□□□□□ -0.59
SF3B1-210ENST00000482158 JUNDP17535 347 aa11.38□□□□□ -0.59
SF3B1-210ENST00000482158 PRDM9Q9NQV7 894 aa11.38□□□□□ -0.59
SF3B1-210ENST00000482158 APBB1O00213 710 aa11.37□□□□□ -0.59
SF3B1-210ENST00000482158 IRF5Q13568 498 aa11.37□□□□□ -0.59
SF3B1-210ENST00000482158 NR6A1Q15406 480 aa11.37□□□□□ -0.59
SF3B1-210ENST00000482158 NDUFB9Q9Y6M9 179 aa11.37□□□□□ -0.59
SF3B1-210ENST00000482158 DXOO77932 396 aaKnown RBP11.36□□□□□ -0.59
SF3B1-210ENST00000482158 ABL2P42684 1182 aa11.36□□□□□ -0.59
SF3B1-210ENST00000482158 IL21Q9HBE4 155 aa11.36□□□□□ -0.59
SF3B1-210ENST00000482158 ADH1BP00325 375 aa11.35□□□□□ -0.59
SF3B1-210ENST00000482158 F12P00748 615 aaPredicted RBP11.35□□□□□ -0.59
SF3B1-210ENST00000482158 MMP16P51512 607 aa11.35□□□□□ -0.59
SF3B1-210ENST00000482158 PTPRNQ16849 979 aa11.34□□□□□ -0.59
SF3B1-210ENST00000482158 RNF166Q96A37 237 aaPredicted RBP11.34□□□□□ -0.59
SF3B1-210ENST00000482158 NKX2-3Q8TAU0 364 aa11.33□□□□□ -0.6
SF3B1-210ENST00000482158 PRM3Q9NNZ6 103 aa11.33□□□□□ -0.6
SF3B1-210ENST00000482158 ZNF777Q9ULD5 760 aaPredicted RBP11.33□□□□□ -0.6
SF3B1-210ENST00000482158 MAP10Q9P2G4 905 aa11.31□□□□□ -0.6
SF3B1-210ENST00000482158 HCSTQ9UBK5 93 aa11.31□□□□□ -0.6
SF3B1-210ENST00000482158 ZNF330Q9Y3S2 320 aaPredicted RBP11.31□□□□□ -0.6
SF3B1-210ENST00000482158 POM121CA8CG34 1229 aa11.29□□□□□ -0.6
SF3B1-210ENST00000482158 EVA1BQ9NVM1 165 aa11.29□□□□□ -0.6
SF3B1-210ENST00000482158 CCNYL3P0C7X3 344 aa11.28□□□□□ -0.6
SF3B1-210ENST00000482158 NUDT12Q9BQG2 462 aa11.28□□□□□ -0.6
SF3B1-210ENST00000482158 SLC6A16Q9GZN6 736 aa11.28□□□□□ -0.6
SF3B1-210ENST00000482158 ITGBL1O95965 494 aaPredicted RBP11.26□□□□□ -0.61
SF3B1-210ENST00000482158 KCNH2Q12809 1159 aa11.25□□□□□ -0.61
SF3B1-210ENST00000482158 S1PR4O95977 384 aa11.24□□□□□ -0.61
SF3B1-210ENST00000482158 CTHP32929 405 aa11.24□□□□□ -0.61
SF3B1-210ENST00000482158 PTCRAQ6ISU1 281 aaPredicted RBP11.24□□□□□ -0.61
SF3B1-210ENST00000482158 FKBPLQ9UIM3 349 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 98.4 ms