RNA–Protein interactions for RNA: ENST00000473373.1

CPNE1-222, Transcript of copine 1, humanhuman

TSL 2

Gene CPNE1, Length 821 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-222ENST00000473373 LRPPRCP42704 1394 aaKnown RBP16.73■□□□□ 0.27
CPNE1-222ENST00000473373 YTHDC2Q9H6S0 1430 aaKnown RBP16.72■□□□□ 0.27
CPNE1-222ENST00000473373 NHSL1Q5SYE7 1610 aa16.71■□□□□ 0.27
CPNE1-222ENST00000473373 SHPRHQ149N8 1683 aa16.71■□□□□ 0.27
CPNE1-222ENST00000473373 AFF2P51816 1311 aa16.7■□□□□ 0.26
CPNE1-222ENST00000473373 WAPLQ7Z5K2 1190 aa16.7■□□□□ 0.26
CPNE1-222ENST00000473373 DDX17Q92841 729 aaKnown RBP16.7■□□□□ 0.26
CPNE1-222ENST00000473373 C14orf93Q9H972 538 aaKnown RBP16.7■□□□□ 0.26
CPNE1-222ENST00000473373 NRXN1Q9ULB1 1477 aa16.69■□□□□ 0.26
CPNE1-222ENST00000473373 SAFB2Q14151 953 aaKnown RBP eCLIP16.69■□□□□ 0.26
CPNE1-222ENST00000473373 POGKQ9P215 609 aa16.69■□□□□ 0.26
CPNE1-222ENST00000473373 PRAG1Q86YV5 1406 aa16.69■□□□□ 0.26
CPNE1-222ENST00000473373 CDC42BPGQ6DT37 1551 aa16.68■□□□□ 0.26
CPNE1-222ENST00000473373 NUTM2FA1L443 756 aa16.68■□□□□ 0.26
CPNE1-222ENST00000473373 ABCC11Q96J66 1382 aa16.67■□□□□ 0.26
CPNE1-222ENST00000473373 RGPD8O14715 1765 aaPredicted RBP16.67■□□□□ 0.26
CPNE1-222ENST00000473373 TRIM26Q12899 539 aaPredicted RBP16.67■□□□□ 0.26
CPNE1-222ENST00000473373 LRRC59Q96AG4 307 aaKnown RBP16.67■□□□□ 0.26
CPNE1-222ENST00000473373 STAC3Q96MF2 364 aa16.67■□□□□ 0.26
CPNE1-222ENST00000473373 TECPR2O15040 1411 aa16.67■□□□□ 0.26
CPNE1-222ENST00000473373 C1orf167Q5SNV9 1468 aa16.67■□□□□ 0.26
CPNE1-222ENST00000473373 ESCO1Q5FWF5 840 aa16.66■□□□□ 0.26
CPNE1-222ENST00000473373 C8orf37Q96NL8 207 aa16.66■□□□□ 0.26
CPNE1-222ENST00000473373 FMN2Q9NZ56 1722 aa16.66■□□□□ 0.26
CPNE1-222ENST00000473373 QTRT2Q9H974 415 aaKnown RBP16.65■□□□□ 0.26
CPNE1-222ENST00000473373 TRAK1Q9UPV9 953 aa16.65■□□□□ 0.26
CPNE1-222ENST00000473373 PLEKHH1Q9ULM0 1364 aa16.64■□□□□ 0.26
CPNE1-222ENST00000473373 NEUROD1Q13562 356 aa16.64■□□□□ 0.25
CPNE1-222ENST00000473373 PRAM1Q96QH2 718 aa16.64■□□□□ 0.25
CPNE1-222ENST00000473373 ORAI2Q96SN7 254 aa16.64■□□□□ 0.25
CPNE1-222ENST00000473373 ADAMTS2O95450 1211 aa16.62■□□□□ 0.25
CPNE1-222ENST00000473373 KIF1AQ12756 1690 aa16.62■□□□□ 0.25
CPNE1-222ENST00000473373 KIAA1210Q9ULL0 1709 aa16.62■□□□□ 0.25
CPNE1-222ENST00000473373 CDK12Q9NYV4 1490 aaPredicted RBP16.61■□□□□ 0.25
CPNE1-222ENST00000473373 RBM6P78332 1123 aaKnown RBP16.61■□□□□ 0.25
CPNE1-222ENST00000473373 ARHGEF28Q8N1W1 1705 aaKnown RBP16.61■□□□□ 0.25
CPNE1-222ENST00000473373 PNPLA6Q8IY17 1366 aa16.61■□□□□ 0.25
CPNE1-222ENST00000473373 DLC1Q96QB1 1528 aa16.6■□□□□ 0.25
CPNE1-222ENST00000473373 NGLY1Q96IV0 654 aa16.6■□□□□ 0.25
CPNE1-222ENST00000473373 SIRT1Q96EB6 747 aa16.59■□□□□ 0.25
CPNE1-222ENST00000473373 NPHP3Q7Z494 1330 aa16.59■□□□□ 0.25
CPNE1-222ENST00000473373 RGS12O14924 1447 aa16.59■□□□□ 0.25
CPNE1-222ENST00000473373 ADGRB1O14514 1584 aa16.59■□□□□ 0.25
CPNE1-222ENST00000473373 SIN3AQ96ST3 1273 aa16.58■□□□□ 0.24
CPNE1-222ENST00000473373 HIRIP3Q9BW71 556 aaPredicted RBP16.58■□□□□ 0.24
CPNE1-222ENST00000473373 MINK1Q8N4C8 1332 aaPredicted RBP16.58■□□□□ 0.24
CPNE1-222ENST00000473373 XPCQ01831 940 aaPredicted RBP16.57■□□□□ 0.24
CPNE1-222ENST00000473373 FOXO3O43524 673 aa16.56■□□□□ 0.24
CPNE1-222ENST00000473373 ITSN1Q15811 1721 aa16.56■□□□□ 0.24
CPNE1-222ENST00000473373 EIF3AQ14152 1382 aaKnown RBP16.54■□□□□ 0.24
CPNE1-222ENST00000473373 USP21Q9UK80 565 aa16.54■□□□□ 0.24
CPNE1-222ENST00000473373 ADGRB2O60241 1585 aa16.54■□□□□ 0.24
CPNE1-222ENST00000473373 SOS2Q07890 1332 aaPredicted RBP16.52■□□□□ 0.24
CPNE1-222ENST00000473373 HAP1P54257 671 aaPredicted RBP16.52■□□□□ 0.24
CPNE1-222ENST00000473373 LMOD2Q6P5Q4 547 aa16.52■□□□□ 0.24
CPNE1-222ENST00000473373 L3MBTL2Q969R5 705 aa16.52■□□□□ 0.24
CPNE1-222ENST00000473373 PHF8Q9UPP1 1060 aa16.52■□□□□ 0.24
CPNE1-222ENST00000473373 PLEKHG5O94827 1062 aa16.51■□□□□ 0.23
CPNE1-222ENST00000473373 TONSLQ96HA7 1378 aa16.51■□□□□ 0.23
CPNE1-222ENST00000473373 MARF1Q9Y4F3 1742 aaKnown RBP16.5■□□□□ 0.23
CPNE1-222ENST00000473373 QRICH2Q9H0J4 1663 aa16.5■□□□□ 0.23
CPNE1-222ENST00000473373 TRPM1Q7Z4N2 1603 aa16.5■□□□□ 0.23
CPNE1-222ENST00000473373 PSME1Q06323 249 aa16.5■□□□□ 0.23
CPNE1-222ENST00000473373 PMFBP1Q8TBY8 1022 aa16.5■□□□□ 0.23
CPNE1-222ENST00000473373 TRPC5Q9UL62 973 aaPredicted RBP16.5■□□□□ 0.23
CPNE1-222ENST00000473373 USP32Q8NFA0 1604 aa16.49■□□□□ 0.23
CPNE1-222ENST00000473373 KRT28Q7Z3Y7 464 aa16.49■□□□□ 0.23
CPNE1-222ENST00000473373 ANKARQ7Z5J8 1434 aa16.49■□□□□ 0.23
CPNE1-222ENST00000473373 ATAD2Q6PL18 1390 aa16.49■□□□□ 0.23
CPNE1-222ENST00000473373 PXDNQ92626 1479 aa16.48■□□□□ 0.23
CPNE1-222ENST00000473373 WASLO00401 505 aaPredicted RBP16.48■□□□□ 0.23
CPNE1-222ENST00000473373 NBPF1Q3BBV0 1214 aa16.48■□□□□ 0.23
CPNE1-222ENST00000473373 TULP4Q9NRJ4 1543 aa16.48■□□□□ 0.23
CPNE1-222ENST00000473373 COL22A1Q8NFW1 1626 aaPredicted RBP16.48■□□□□ 0.23
CPNE1-222ENST00000473373 FNBP4Q8N3X1 1017 aaPredicted RBP16.47■□□□□ 0.23
CPNE1-222ENST00000473373 ROCK2O75116 1388 aaKnown RBP16.47■□□□□ 0.23
CPNE1-222ENST00000473373 NGDNQ8NEJ9 315 aaKnown RBP16.46■□□□□ 0.23
CPNE1-222ENST00000473373 GPRASP1Q5JY77 1395 aa16.46■□□□□ 0.23
CPNE1-222ENST00000473373 CENPJQ9HC77 1338 aaPredicted RBP16.45■□□□□ 0.22
CPNE1-222ENST00000473373 SRPK2P78362 688 aaKnown RBP16.44■□□□□ 0.22
CPNE1-222ENST00000473373 PAK3O75914 559 aaPredicted RBP16.43■□□□□ 0.22
CPNE1-222ENST00000473373 CDK19Q9BWU1 502 aa16.43■□□□□ 0.22
CPNE1-222ENST00000473373 ZRANB1Q9UGI0 708 aa16.43■□□□□ 0.22
CPNE1-222ENST00000473373 TNS3Q68CZ2 1445 aa16.43■□□□□ 0.22
CPNE1-222ENST00000473373 PCGF6Q9BYE7 350 aa16.42■□□□□ 0.22
CPNE1-222ENST00000473373 ATRNO75882 1429 aa16.42■□□□□ 0.22
CPNE1-222ENST00000473373 SPATA31A3Q5VYP0 1347 aa16.42■□□□□ 0.22
CPNE1-222ENST00000473373 NUDT16Q96DE0 195 aaKnown RBP16.41■□□□□ 0.22
CPNE1-222ENST00000473373 PRR36Q9H6K5 1346 aa16.4■□□□□ 0.22
CPNE1-222ENST00000473373 ARHGEF10O15013 1369 aa16.39■□□□□ 0.21
CPNE1-222ENST00000473373 ABCA3Q99758 1704 aa16.39■□□□□ 0.21
CPNE1-222ENST00000473373 TRPM3Q9HCF6 1732 aaPredicted RBP16.39■□□□□ 0.21
CPNE1-222ENST00000473373 ATP7BP35670 1465 aa16.39■□□□□ 0.21
CPNE1-222ENST00000473373 BCL9LQ86UU0 1499 aa16.39■□□□□ 0.21
CPNE1-222ENST00000473373 TOPAZ1Q8N9V7 1692 aa16.39■□□□□ 0.21
CPNE1-222ENST00000473373 GJD4Q96KN9 370 aaPredicted RBP16.38■□□□□ 0.21
CPNE1-222ENST00000473373 SBNO1A3KN83 1393 aa16.38■□□□□ 0.21
CPNE1-222ENST00000473373 CARD11Q9BXL7 1154 aa16.37■□□□□ 0.21
CPNE1-222ENST00000473373 ALS2Q96Q42 1657 aa16.37■□□□□ 0.21
CPNE1-222ENST00000473373 CCDC125Q86Z20 511 aa16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms