RNA–Protein interactions for RNA: ENST00000472760.1

PRPF40A-208, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 2

Gene PRPF40A, Length 243 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-208ENST00000472760 MTMR2Q13614 643 aa9.66□□□□□ -0.86
PRPF40A-208ENST00000472760 PUS10Q3MIT2 529 aaKnown RBP9.66□□□□□ -0.86
PRPF40A-208ENST00000472760 AP1G2O75843 785 aa9.65□□□□□ -0.86
PRPF40A-208ENST00000472760 UBTFP17480 764 aaKnown RBP9.65□□□□□ -0.86
PRPF40A-208ENST00000472760 SPDYE5A6NIY4 337 aa9.64□□□□□ -0.87
PRPF40A-208ENST00000472760 MORN1Q5T089 497 aa9.64□□□□□ -0.87
PRPF40A-208ENST00000472760 APLP1P51693 650 aa9.63□□□□□ -0.87
PRPF40A-208ENST00000472760 KCTD12Q96CX2 325 aaKnown RBP9.63□□□□□ -0.87
PRPF40A-208ENST00000472760 SNRKQ9NRH2 765 aa9.63□□□□□ -0.87
PRPF40A-208ENST00000472760 SUPT5HO00267 1087 aaKnown RBP9.62□□□□□ -0.87
PRPF40A-208ENST00000472760 Q3C1V9 767 aa9.62□□□□□ -0.87
PRPF40A-208ENST00000472760 THSD4Q6ZMP0 1018 aa9.62□□□□□ -0.87
PRPF40A-208ENST00000472760 WBP1LQ9NX94 342 aa9.62□□□□□ -0.87
PRPF40A-208ENST00000472760 SLC27A5Q9Y2P5 690 aa9.62□□□□□ -0.87
PRPF40A-208ENST00000472760 PCDHB3Q9Y5E6 796 aa9.62□□□□□ -0.87
PRPF40A-208ENST00000472760 TSC1Q92574 1164 aa9.61□□□□□ -0.87
PRPF40A-208ENST00000472760 SYMPKQ92797 1274 aaKnown RBP9.61□□□□□ -0.87
PRPF40A-208ENST00000472760 RAD21O60216 631 aa9.6□□□□□ -0.87
PRPF40A-208ENST00000472760 HELBQ8NG08 1087 aaPredicted RBP9.6□□□□□ -0.87
PRPF40A-208ENST00000472760 CLUAP1Q96AJ1 413 aa9.59□□□□□ -0.87
PRPF40A-208ENST00000472760 NR1I2O75469 434 aa9.58□□□□□ -0.88
PRPF40A-208ENST00000472760 RETREG3Q86VR2 466 aa9.58□□□□□ -0.88
PRPF40A-208ENST00000472760 A6NJR5 290 aa9.57□□□□□ -0.88
PRPF40A-208ENST00000472760 CFAP99D6REC4 459 aa9.57□□□□□ -0.88
PRPF40A-208ENST00000472760 APBB1O00213 710 aa9.57□□□□□ -0.88
PRPF40A-208ENST00000472760 USP17L8P0C7I0 530 aa9.57□□□□□ -0.88
PRPF40A-208ENST00000472760 SCUBE3Q8IX30 993 aa9.57□□□□□ -0.88
PRPF40A-208ENST00000472760 PRR7Q8TB68 274 aa9.57□□□□□ -0.88
PRPF40A-208ENST00000472760 CTDSPL2Q05D32 466 aa9.56□□□□□ -0.88
PRPF40A-208ENST00000472760 BLOC1S3Q6QNY0 202 aa9.56□□□□□ -0.88
PRPF40A-208ENST00000472760 NYAP1Q6ZVC0 841 aa9.56□□□□□ -0.88
PRPF40A-208ENST00000472760 MTMR14Q8NCE2 650 aa9.56□□□□□ -0.88
PRPF40A-208ENST00000472760 PRM3Q9NNZ6 103 aa9.56□□□□□ -0.88
PRPF40A-208ENST00000472760 FMNL1O95466 1100 aaPredicted RBP9.55□□□□□ -0.88
PRPF40A-208ENST00000472760 PTPN5P54829 565 aa9.55□□□□□ -0.88
PRPF40A-208ENST00000472760 RNF19BQ6ZMZ0 732 aa9.55□□□□□ -0.88
PRPF40A-208ENST00000472760 SALL2Q9Y467 1007 aaPredicted RBP9.55□□□□□ -0.88
PRPF40A-208ENST00000472760 BRICD5Q6PL45 260 aa9.54□□□□□ -0.88
PRPF40A-208ENST00000472760 POM121Q96HA1 1249 aa9.54□□□□□ -0.88
PRPF40A-208ENST00000472760 USB1Q9BQ65 265 aaKnown RBP9.54□□□□□ -0.88
PRPF40A-208ENST00000472760 SOCS7O14512 581 aa9.53□□□□□ -0.88
PRPF40A-208ENST00000472760 COPS2P61201 443 aa9.53□□□□□ -0.88
PRPF40A-208ENST00000472760 COG6Q9Y2V7 657 aa9.53□□□□□ -0.88
PRPF40A-208ENST00000472760 MYT1LQ9UL68 1186 aa9.52□□□□□ -0.89
PRPF40A-208ENST00000472760 TRAK2O60296 914 aa9.51□□□□□ -0.89
PRPF40A-208ENST00000472760 PROSER2Q86WR7 435 aaPredicted RBP9.51□□□□□ -0.89
PRPF40A-208ENST00000472760 SPNS2Q8IVW8 549 aa9.51□□□□□ -0.89
PRPF40A-208ENST00000472760 LRRN4Q8WUT4 740 aa9.51□□□□□ -0.89
PRPF40A-208ENST00000472760 GDPD2Q9HCC8 539 aa9.51□□□□□ -0.89
PRPF40A-208ENST00000472760 DESI1Q6ICB0 168 aa9.5□□□□□ -0.89
PRPF40A-208ENST00000472760 WWC1Q8IX03 1113 aa9.5□□□□□ -0.89
PRPF40A-208ENST00000472760 THAP11Q96EK4 314 aa9.5□□□□□ -0.89
PRPF40A-208ENST00000472760 HMX1Q9NP08 348 aaPredicted RBP9.49□□□□□ -0.89
PRPF40A-208ENST00000472760 ABL2P42684 1182 aa9.48□□□□□ -0.89
PRPF40A-208ENST00000472760 SPSB2Q99619 263 aa9.48□□□□□ -0.89
PRPF40A-208ENST00000472760 TBC1D2BQ9UPU7 963 aa9.48□□□□□ -0.89
PRPF40A-208ENST00000472760 NDUFB9Q9Y6M9 179 aa9.48□□□□□ -0.89
PRPF40A-208ENST00000472760 PER1O15534 1290 aaPredicted RBP9.47□□□□□ -0.89
PRPF40A-208ENST00000472760 LYPD8Q6UX82 237 aa9.47□□□□□ -0.89
PRPF40A-208ENST00000472760 GJD4Q96KN9 370 aaPredicted RBP9.47□□□□□ -0.89
PRPF40A-208ENST00000472760 MTRQ99707 1265 aa9.47□□□□□ -0.89
PRPF40A-208ENST00000472760 ARID3CA6NKF2 412 aa9.46□□□□□ -0.9
PRPF40A-208ENST00000472760 ZPR1O75312 459 aa9.46□□□□□ -0.9
PRPF40A-208ENST00000472760 JUNDP17535 347 aa9.46□□□□□ -0.9
PRPF40A-208ENST00000472760 MMRN1Q13201 1228 aa9.46□□□□□ -0.9
PRPF40A-208ENST00000472760 FNBP4Q8N3X1 1017 aaPredicted RBP9.46□□□□□ -0.9
PRPF40A-208ENST00000472760 MSS51Q4VC12 460 aa9.45□□□□□ -0.9
PRPF40A-208ENST00000472760 TRIM34Q9BYJ4 488 aa9.45□□□□□ -0.9
PRPF40A-208ENST00000472760 IL21Q9HBE4 155 aa9.45□□□□□ -0.9
PRPF40A-208ENST00000472760 ZNF330Q9Y3S2 320 aaPredicted RBP9.45□□□□□ -0.9
PRPF40A-208ENST00000472760 NR6A1Q15406 480 aa9.44□□□□□ -0.9
PRPF40A-208ENST00000472760 FAM160A2Q8N612 972 aaPredicted RBP9.44□□□□□ -0.9
PRPF40A-208ENST00000472760 ZNF777Q9ULD5 760 aaPredicted RBP9.44□□□□□ -0.9
PRPF40A-208ENST00000472760 TJAP1Q5JTD0 557 aa9.43□□□□□ -0.9
PRPF40A-208ENST00000472760 EPS8L1Q8TE68 723 aa9.43□□□□□ -0.9
PRPF40A-208ENST00000472760 TLL1O43897 1013 aa9.42□□□□□ -0.9
PRPF40A-208ENST00000472760 ADH1BP00325 375 aa9.42□□□□□ -0.9
PRPF40A-208ENST00000472760 PTPRNQ16849 979 aa9.42□□□□□ -0.9
PRPF40A-208ENST00000472760 PNMA1Q8ND90 353 aa9.42□□□□□ -0.9
PRPF40A-208ENST00000472760 ZNF516Q92618 1163 aa9.42□□□□□ -0.9
PRPF40A-208ENST00000472760 RNF166Q96A37 237 aaPredicted RBP9.41□□□□□ -0.9
PRPF40A-208ENST00000472760 HCSTQ9UBK5 93 aa9.41□□□□□ -0.9
PRPF40A-208ENST00000472760 DXOO77932 396 aaKnown RBP9.4□□□□□ -0.9
PRPF40A-208ENST00000472760 CTHP32929 405 aa9.4□□□□□ -0.9
PRPF40A-208ENST00000472760 C1orf115Q9H7X2 142 aa9.4□□□□□ -0.9
PRPF40A-208ENST00000472760 PRDM9Q9NQV7 894 aa9.4□□□□□ -0.9
PRPF40A-208ENST00000472760 MMP16P51512 607 aa9.39□□□□□ -0.91
PRPF40A-208ENST00000472760 ARID3AQ99856 593 aa9.39□□□□□ -0.91
PRPF40A-208ENST00000472760 NUDT12Q9BQG2 462 aa9.39□□□□□ -0.91
PRPF40A-208ENST00000472760 SLC6A16Q9GZN6 736 aa9.39□□□□□ -0.91
PRPF40A-208ENST00000472760 CCNYL3P0C7X3 344 aa9.38□□□□□ -0.91
PRPF40A-208ENST00000472760 IRF5Q13568 498 aa9.38□□□□□ -0.91
PRPF40A-208ENST00000472760 WASHC4Q2M389 1173 aa9.38□□□□□ -0.91
PRPF40A-208ENST00000472760 F12P00748 615 aaPredicted RBP9.37□□□□□ -0.91
PRPF40A-208ENST00000472760 EVA1BQ9NVM1 165 aa9.37□□□□□ -0.91
PRPF40A-208ENST00000472760 MAP10Q9P2G4 905 aa9.37□□□□□ -0.91
PRPF40A-208ENST00000472760 CCDC24Q8N4L8 307 aa9.36□□□□□ -0.91
PRPF40A-208ENST00000472760 KCNH2Q12809 1159 aa9.35□□□□□ -0.91
PRPF40A-208ENST00000472760 NKX2-3Q8TAU0 364 aa9.35□□□□□ -0.91
PRPF40A-208ENST00000472760 FKBPLQ9UIM3 349 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms