RNA–Protein interactions for RNA: ENST00000462668.5

SMC4-203, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 4,235 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-203ENST00000462668 VAC14Q08AM6 782 aa4.94□□□□□ -1.62
SMC4-203ENST00000462668 B4GALNT3Q6L9W6 998 aa4.94□□□□□ -1.62
SMC4-203ENST00000462668 TBC1D9Q6ZT07 1266 aa4.94□□□□□ -1.62
SMC4-203ENST00000462668 ZSWIM6Q9HCJ5 1215 aa4.94□□□□□ -1.62
SMC4-203ENST00000462668 ECM1Q16610 540 aa4.94□□□□□ -1.62
SMC4-203ENST00000462668 DESI1Q6ICB0 168 aa4.94□□□□□ -1.62
SMC4-203ENST00000462668 SOWAHDA6NJG2 315 aa4.94□□□□□ -1.62
SMC4-203ENST00000462668 CADPSQ9ULU8 1353 aa4.94□□□□□ -1.62
SMC4-203ENST00000462668 BCL2L12Q9HB09 334 aa4.93□□□□□ -1.62
SMC4-203ENST00000462668 TMEM164Q5U3C3 297 aa4.93□□□□□ -1.62
SMC4-203ENST00000462668 FBXO33Q7Z6M2 555 aa4.93□□□□□ -1.62
SMC4-203ENST00000462668 CCDC125Q86Z20 511 aa4.93□□□□□ -1.62
SMC4-203ENST00000462668 FAM196BA6NMK8 535 aa4.93□□□□□ -1.62
SMC4-203ENST00000462668 KDM4AO75164 1064 aa4.93□□□□□ -1.62
SMC4-203ENST00000462668 NPAS4Q8IUM7 802 aa4.93□□□□□ -1.62
SMC4-203ENST00000462668 PHTF2Q8N3S3 785 aa4.93□□□□□ -1.62
SMC4-203ENST00000462668 EPS8L1Q8TE68 723 aa4.93□□□□□ -1.62
SMC4-203ENST00000462668 HOXB3P14651 431 aaPredicted RBP4.92□□□□□ -1.62
SMC4-203ENST00000462668 LMOD1P29536 600 aaPredicted RBP4.92□□□□□ -1.62
SMC4-203ENST00000462668 ZNF16P17020 682 aaPredicted RBP4.92□□□□□ -1.62
SMC4-203ENST00000462668 PPP1R3GB7ZBB8 358 aa4.92□□□□□ -1.62
SMC4-203ENST00000462668 COL19A1Q14993 1142 aa4.92□□□□□ -1.62
SMC4-203ENST00000462668 TRIM6-TRIM34B2RNG4 842 aa4.92□□□□□ -1.62
SMC4-203ENST00000462668 NUTM1Q86Y26 1132 aa4.92□□□□□ -1.62
SMC4-203ENST00000462668 SLF2Q8IX21 1173 aa4.92□□□□□ -1.62
SMC4-203ENST00000462668 GPR153Q6NV75 609 aa4.91□□□□□ -1.62
SMC4-203ENST00000462668 EGFL7Q9UHF1 273 aa4.91□□□□□ -1.62
SMC4-203ENST00000462668 G3V3G9 751 aa4.91□□□□□ -1.62
SMC4-203ENST00000462668 EVX2Q03828 476 aa4.91□□□□□ -1.62
SMC4-203ENST00000462668 MTMR2Q13614 643 aa4.91□□□□□ -1.62
SMC4-203ENST00000462668 TATDN2Q93075 761 aa4.91□□□□□ -1.62
SMC4-203ENST00000462668 LRRN4Q8WUT4 740 aa4.91□□□□□ -1.62
SMC4-203ENST00000462668 SLC39A7Q92504 469 aa4.9□□□□□ -1.62
SMC4-203ENST00000462668 LZTS3O60299 673 aaPredicted RBP4.9□□□□□ -1.62
SMC4-203ENST00000462668 STK32AQ8WU08 396 aa4.9□□□□□ -1.62
SMC4-203ENST00000462668 ZC3H4Q9UPT8 1303 aaKnown RBP4.9□□□□□ -1.63
SMC4-203ENST00000462668 SLC10A3P09131 477 aa4.9□□□□□ -1.63
SMC4-203ENST00000462668 PTK7Q13308 1070 aa4.9□□□□□ -1.63
SMC4-203ENST00000462668 MRRFQ96E11 262 aaKnown RBP4.9□□□□□ -1.63
SMC4-203ENST00000462668 NUDT18Q6ZVK8 323 aa4.89□□□□□ -1.63
SMC4-203ENST00000462668 RNF135Q8IUD6 432 aa4.89□□□□□ -1.63
SMC4-203ENST00000462668 F12P00748 615 aaPredicted RBP4.89□□□□□ -1.63
SMC4-203ENST00000462668 CCER1Q8TC90 406 aaPredicted RBP4.89□□□□□ -1.63
SMC4-203ENST00000462668 HSP90B1P14625 803 aaKnown RBP4.89□□□□□ -1.63
SMC4-203ENST00000462668 NR1H3Q13133 447 aa4.89□□□□□ -1.63
SMC4-203ENST00000462668 NBPF26B4DH59 902 aa4.89□□□□□ -1.63
SMC4-203ENST00000462668 ARID4AP29374 1257 aaPredicted RBP4.89□□□□□ -1.63
SMC4-203ENST00000462668 TAS1R3Q7RTX0 852 aa4.89□□□□□ -1.63
SMC4-203ENST00000462668 SLC4A5Q9BY07 1137 aa4.89□□□□□ -1.63
SMC4-203ENST00000462668 FDX1P10109 184 aa4.88□□□□□ -1.63
SMC4-203ENST00000462668 LDLRAD1Q5T700 205 aa4.88□□□□□ -1.63
SMC4-203ENST00000462668 OCSTAMPQ9BR26 566 aa4.88□□□□□ -1.63
SMC4-203ENST00000462668 NOVA2Q9UNW9 492 aaKnown RBP4.88□□□□□ -1.63
SMC4-203ENST00000462668 RFX1P22670 979 aa4.88□□□□□ -1.63
SMC4-203ENST00000462668 DDX11L8A8MPP1 907 aa4.87□□□□□ -1.63
SMC4-203ENST00000462668 USP17L15C9J2P7 530 aa4.87□□□□□ -1.63
SMC4-203ENST00000462668 USP17L10C9JJH3 530 aa4.87□□□□□ -1.63
SMC4-203ENST00000462668 USP17L13C9JLJ4 530 aa4.87□□□□□ -1.63
SMC4-203ENST00000462668 USP17L12C9JPN9 530 aa4.87□□□□□ -1.63
SMC4-203ENST00000462668 USP17L11C9JVI0 530 aa4.87□□□□□ -1.63
SMC4-203ENST00000462668 USP17L21D6R901 530 aa4.87□□□□□ -1.63
SMC4-203ENST00000462668 USP17L18D6R9N7 530 aa4.87□□□□□ -1.63
SMC4-203ENST00000462668 USP17L22D6RA61 530 aa4.87□□□□□ -1.63
SMC4-203ENST00000462668 USP17L17D6RBQ6 530 aa4.87□□□□□ -1.63
SMC4-203ENST00000462668 USP17L19D6RCP7 530 aa4.87□□□□□ -1.63
SMC4-203ENST00000462668 USP17L20D6RJB6 530 aa4.87□□□□□ -1.63
SMC4-203ENST00000462668 USP17L24Q0WX57 530 aa4.87□□□□□ -1.63
SMC4-203ENST00000462668 SWI5Q1ZZU3 235 aa4.87□□□□□ -1.63
SMC4-203ENST00000462668 LYPD8Q6UX82 237 aa4.87□□□□□ -1.63
SMC4-203ENST00000462668 ZNF454Q8N9F8 522 aa4.87□□□□□ -1.63
SMC4-203ENST00000462668 HMGB1P09429 215 aaKnown RBP4.86□□□□□ -1.63
SMC4-203ENST00000462668 TRAF7Q6Q0C0 670 aa4.86□□□□□ -1.63
SMC4-203ENST00000462668 MCCD1P59942 119 aaPredicted RBP4.86□□□□□ -1.63
SMC4-203ENST00000462668 CDCA7Q9BWT1 371 aaPredicted RBP4.86□□□□□ -1.63
SMC4-203ENST00000462668 NPR3P17342 541 aa4.86□□□□□ -1.63
SMC4-203ENST00000462668 FAM174AQ8TBP5 190 aa4.86□□□□□ -1.63
SMC4-203ENST00000462668 PSDA5PKW4 1024 aaPredicted RBP4.86□□□□□ -1.63
SMC4-203ENST00000462668 USP17L3A6NCW0 530 aa4.86□□□□□ -1.63
SMC4-203ENST00000462668 USP17L4A6NCW7 530 aa4.86□□□□□ -1.63
SMC4-203ENST00000462668 PIK3CDO00329 1044 aa4.86□□□□□ -1.63
SMC4-203ENST00000462668 CANXP27824 592 aaKnown RBP4.86□□□□□ -1.63
SMC4-203ENST00000462668 OCLNQ16625 522 aa4.86□□□□□ -1.63
SMC4-203ENST00000462668 USP17L2Q6R6M4 530 aa4.86□□□□□ -1.63
SMC4-203ENST00000462668 USP17L1Q7RTZ2 530 aa4.86□□□□□ -1.63
SMC4-203ENST00000462668 SIX5Q8N196 739 aa4.86□□□□□ -1.63
SMC4-203ENST00000462668 RECKO95980 971 aa4.85□□□□□ -1.63
SMC4-203ENST00000462668 SEMA3FQ13275 785 aa4.85□□□□□ -1.63
SMC4-203ENST00000462668 NR6A1Q15406 480 aa4.85□□□□□ -1.63
SMC4-203ENST00000462668 FAM177A1Q8N128 213 aaPredicted RBP4.85□□□□□ -1.63
SMC4-203ENST00000462668 HLA-CQ95604 372 aa4.85□□□□□ -1.63
SMC4-203ENST00000462668 NUTM2BA6NNL0 878 aaPredicted RBP4.85□□□□□ -1.63
SMC4-203ENST00000462668 NUTM2EB1AL46 878 aaPredicted RBP4.85□□□□□ -1.63
SMC4-203ENST00000462668 GUCA2AQ02747 115 aa4.85□□□□□ -1.63
SMC4-203ENST00000462668 CRTC2Q53ET0 693 aaPredicted RBP4.85□□□□□ -1.63
SMC4-203ENST00000462668 NUTM2DQ5VT03 806 aaPredicted RBP4.85□□□□□ -1.63
SMC4-203ENST00000462668 NUTM2AQ8IVF1 878 aaPredicted RBP4.85□□□□□ -1.63
SMC4-203ENST00000462668 HELBQ8NG08 1087 aaPredicted RBP4.85□□□□□ -1.63
SMC4-203ENST00000462668 GPSM3Q9Y4H4 160 aa4.85□□□□□ -1.63
SMC4-203ENST00000462668 EIF4G2P78344 907 aaKnown RBP eCLIP4.85□□□□□ -1.63
SMC4-203ENST00000462668 TCF3P15923 654 aa4.84□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms