RNA–Protein interactions for RNA: ENST00000462668.5

SMC4-203, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 4,235 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-203ENST00000462668 UPF1Q92900 1129 aaKnown RBP eCLIP5.07□□□□□ -1.63e-11■■■■■ 47.5
SMC4-203ENST00000462668 UTP3Q9NQZ2 479 aaKnown RBP eCLIP4.48□□□□□ -1.695e-8■■■■■ 43.3
SMC4-203ENST00000462668 LIN28BQ6ZN17 250 aaKnown RBP eCLIP2.49□□□□□ -2.011e-8■■■■■ 34.6
SMC4-203ENST00000462668 SF3A3Q12874 501 aaKnown RBP eCLIP3.31□□□□□ -1.886e-7■■■■■ 34
SMC4-203ENST00000462668 SUB1P53999 127 aaKnown RBP eCLIP2.24□□□□□ -2.055e-10■■■■■ 33.9
SMC4-203ENST00000462668 ZNF800Q2TB10 664 aaPredicted RBP eCLIP3.98□□□□□ -1.775e-8■■■■■ 30.5
SMC4-203ENST00000462668 AQRO60306 1485 aaKnown RBP eCLIP2.75□□□□□ -1.977e-8■■■■□ 26.2
SMC4-203ENST00000462668 ZC3H11AO75152 810 aaKnown RBP eCLIP3.13□□□□□ -1.918e-7■■■■□ 26.1
SMC4-203ENST00000462668 PPIL4Q8WUA2 492 aaKnown RBP eCLIP3.7□□□□□ -1.826e-8■■■■□ 23.9
SMC4-203ENST00000462668 U2AF2P26368 475 aaKnown RBP eCLIP2.57□□□□□ -23e-6■■■■□ 23.7
SMC4-203ENST00000462668 YBX3P16989 372 aaKnown RBP eCLIP4.03□□□□□ -1.761e-12■■■■□ 23.5
SMC4-203ENST00000462668 TARDBPQ13148 414 aaKnown RBP eCLIP3.59□□□□□ -1.843e-6■■■■□ 21.4
SMC4-203ENST00000462668 RBM22Q9NW64 420 aaKnown RBP eCLIP2.19□□□□□ -2.062e-6■■■□□ 19
SMC4-203ENST00000462668 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP0.8□□□□□ -2.282e-6■■■□□ 18.8
SMC4-203ENST00000462668 KHDRBS1Q07666 443 aaKnown RBP eCLIP3.48□□□□□ -1.857e-6■■■□□ 17.7
SMC4-203ENST00000462668 DDX24Q9GZR7 859 aaKnown RBP eCLIP3.64□□□□□ -1.835e-8■■■□□ 16.4
SMC4-203ENST00000462668 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP5.21□□□□□ -1.579e-7■■■□□ 16.3
SMC4-203ENST00000462668 EFTUD2Q15029 972 aaKnown RBP eCLIP2.65□□□□□ -1.998e-9■■■□□ 15.7
SMC4-203ENST00000462668 CPSF6Q16630 551 aaKnown RBP eCLIP3.6□□□□□ -1.834e-6■■■□□ 15.6
SMC4-203ENST00000462668 TRA2AQ13595 282 aaKnown RBP eCLIP3.08□□□□□ -1.927e-8■■■□□ 14.7
SMC4-203ENST00000462668 KHSRPQ92945 711 aaKnown RBP eCLIP4.83□□□□□ -1.649e-7■■□□□ 14.4
SMC4-203ENST00000462668 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP3.67□□□□□ -1.823e-7■■□□□ 12.9
SMC4-203ENST00000462668 PABPC4Q13310 644 aaKnown RBP eCLIP4.15□□□□□ -1.747e-6■■□□□ 12
SMC4-203ENST00000462668 SAFBQ15424 915 aaKnown RBP eCLIP3.88□□□□□ -1.792e-9■■□□□ 11.5
SMC4-203ENST00000462668 GRWD1Q9BQ67 446 aaKnown RBP eCLIP6.4□□□□□ -1.392e-7■□□□□ 10.7
SMC4-203ENST00000462668 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP2.8□□□□□ -1.962e-10■□□□□ 10.6
SMC4-203ENST00000462668 EIF3HO15372 352 aaKnown RBP eCLIP2.45□□□□□ -2.028e-6■□□□□ 10.6
SMC4-203ENST00000462668 ZNF622Q969S3 477 aaKnown RBP eCLIP3.2□□□□□ -1.92e-10■□□□□ 10.4
SMC4-203ENST00000462668 BUD13Q9BRD0 619 aaKnown RBP eCLIP4.37□□□□□ -1.713e-6■□□□□ 10.2
SMC4-203ENST00000462668 LARP4Q71RC2 724 aaKnown RBP eCLIP3.35□□□□□ -1.871e-17■□□□□ 10.1
SMC4-203ENST00000462668 SF3B4Q15427 424 aaKnown RBP eCLIP2.56□□□□□ -21e-7■□□□□ 9.6
SMC4-203ENST00000462668 SF3B1O75533 1304 aaKnown RBP eCLIP2.78□□□□□ -1.962e-7■□□□□ 9.5
SMC4-203ENST00000462668 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP3.13□□□□□ -1.919e-6■□□□□ 8.7
SMC4-203ENST00000462668 NIPBLQ6KC79 2804 aaeCLIP1.48□□□□□ -2.173e-6■□□□□ 8.5
SMC4-203ENST00000462668 WDR43Q15061 677 aaKnown RBP eCLIP2.22□□□□□ -2.052e-6■□□□□ 8.5
SMC4-203ENST00000462668 GPKOWQ92917 476 aaPredicted RBP eCLIP4.79□□□□□ -1.645e-16■□□□□ 8.4
SMC4-203ENST00000462668 PPIGQ13427 754 aaKnown RBP eCLIP3.16□□□□□ -1.95e-7■□□□□ 8.2
Retrieved 37 of 37 RNA–protein pairs in 14.8 ms