RNA–Protein interactions for RNA: ENST00000459727.5

HDAC3-202, Transcript of histone deacetylase 3, humanhuman

TSL 5

Gene HDAC3, Length 524 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-202ENST00000459727 ANKRD36BQ8N2N9 1353 aa11.52□□□□□ -0.57
HDAC3-202ENST00000459727 NSD3Q9BZ95 1437 aa11.52□□□□□ -0.57
HDAC3-202ENST00000459727 NEXMIFQ5QGS0 1516 aa11.51□□□□□ -0.57
HDAC3-202ENST00000459727 BACH2Q9BYV9 841 aa11.51□□□□□ -0.57
HDAC3-202ENST00000459727 PDE4AP27815 886 aa11.5□□□□□ -0.57
HDAC3-202ENST00000459727 PDE3AQ14432 1141 aa11.5□□□□□ -0.57
HDAC3-202ENST00000459727 CCDC27Q2M243 656 aa11.5□□□□□ -0.57
HDAC3-202ENST00000459727 MORC1Q86VD1 984 aa11.5□□□□□ -0.57
HDAC3-202ENST00000459727 PPP6R1Q9UPN7 881 aa11.5□□□□□ -0.57
HDAC3-202ENST00000459727 ATAD2Q6PL18 1390 aa11.5□□□□□ -0.57
HDAC3-202ENST00000459727 DIP2BQ9P265 1576 aa11.5□□□□□ -0.57
HDAC3-202ENST00000459727 CHGAP10645 457 aaKnown RBP11.49□□□□□ -0.57
HDAC3-202ENST00000459727 RTL5Q5HYW3 569 aaPredicted RBP11.49□□□□□ -0.57
HDAC3-202ENST00000459727 KDM2BQ8NHM5 1336 aa11.49□□□□□ -0.57
HDAC3-202ENST00000459727 ZMYM3Q14202 1370 aa11.49□□□□□ -0.57
HDAC3-202ENST00000459727 MED14O60244 1454 aa11.49□□□□□ -0.57
HDAC3-202ENST00000459727 REREQ9P2R6 1566 aa11.49□□□□□ -0.57
HDAC3-202ENST00000459727 RICTORQ6R327 1708 aa11.49□□□□□ -0.57
HDAC3-202ENST00000459727 CT47B1P0C2W7 299 aaPredicted RBP11.48□□□□□ -0.57
HDAC3-202ENST00000459727 GGT6Q6P531 493 aa11.48□□□□□ -0.57
HDAC3-202ENST00000459727 WDR63Q8IWG1 891 aa11.48□□□□□ -0.57
HDAC3-202ENST00000459727 RUNDC1Q96C34 613 aa11.48□□□□□ -0.57
HDAC3-202ENST00000459727 CARD14Q9BXL6 1004 aa11.48□□□□□ -0.57
HDAC3-202ENST00000459727 USP35Q9P2H5 1018 aa11.48□□□□□ -0.57
HDAC3-202ENST00000459727 ARHGEF28Q8N1W1 1705 aaKnown RBP11.48□□□□□ -0.57
HDAC3-202ENST00000459727 IQSEC2Q5JU85 1478 aa11.47□□□□□ -0.57
HDAC3-202ENST00000459727 APAF1O14727 1248 aa11.47□□□□□ -0.57
HDAC3-202ENST00000459727 PPM1GO15355 546 aaPredicted RBP11.46□□□□□ -0.57
HDAC3-202ENST00000459727 PNNQ9H307 717 aaKnown RBP11.46□□□□□ -0.57
HDAC3-202ENST00000459727 SHPRHQ149N8 1683 aa11.46□□□□□ -0.58
HDAC3-202ENST00000459727 MAPK8IP3Q9UPT6 1336 aa11.45□□□□□ -0.58
HDAC3-202ENST00000459727 MYH16Q9H6N6 1097 aa11.45□□□□□ -0.58
HDAC3-202ENST00000459727 TRAK1Q9UPV9 953 aa11.45□□□□□ -0.58
HDAC3-202ENST00000459727 CLTCQ00610 1675 aaKnown RBP11.45□□□□□ -0.58
HDAC3-202ENST00000459727 AGLP35573 1532 aa11.45□□□□□ -0.58
HDAC3-202ENST00000459727 TULP4Q9NRJ4 1543 aa11.45□□□□□ -0.58
HDAC3-202ENST00000459727 PLIN1O60240 522 aa11.44□□□□□ -0.58
HDAC3-202ENST00000459727 FAM161AQ3B820 660 aa11.44□□□□□ -0.58
HDAC3-202ENST00000459727 PHF23Q9BUL5 403 aaPredicted RBP11.44□□□□□ -0.58
HDAC3-202ENST00000459727 ABCC11Q96J66 1382 aa11.43□□□□□ -0.58
HDAC3-202ENST00000459727 PREX1Q8TCU6 1659 aa11.43□□□□□ -0.58
HDAC3-202ENST00000459727 SENP3-EIF4A1A0A087X0R7 540 aa11.43□□□□□ -0.58
HDAC3-202ENST00000459727 WWC1Q8IX03 1113 aa11.43□□□□□ -0.58
HDAC3-202ENST00000459727 TERF2IPQ9NYB0 399 aa11.43□□□□□ -0.58
HDAC3-202ENST00000459727 SIGLEC1Q9BZZ2 1709 aa11.43□□□□□ -0.58
HDAC3-202ENST00000459727 TMEM131LA2VDJ0 1609 aa11.42□□□□□ -0.58
HDAC3-202ENST00000459727 ADGRB2O60241 1585 aa11.42□□□□□ -0.58
HDAC3-202ENST00000459727 DLC1Q96QB1 1528 aa11.42□□□□□ -0.58
HDAC3-202ENST00000459727 CANXP27824 592 aaKnown RBP11.42□□□□□ -0.58
HDAC3-202ENST00000459727 CCDC146Q8IYE0 955 aa11.42□□□□□ -0.58
HDAC3-202ENST00000459727 PMFBP1Q8TBY8 1022 aa11.41□□□□□ -0.58
HDAC3-202ENST00000459727 DAXXQ9UER7 740 aaPredicted RBP11.41□□□□□ -0.58
HDAC3-202ENST00000459727 ANKRD26Q9UPS8 1709 aa11.4□□□□□ -0.58
HDAC3-202ENST00000459727 IL16Q14005 1332 aa11.39□□□□□ -0.59
HDAC3-202ENST00000459727 PTPRMP28827 1452 aa11.39□□□□□ -0.59
HDAC3-202ENST00000459727 FAM69CQ0P6D2 419 aa11.39□□□□□ -0.59
HDAC3-202ENST00000459727 C20orf194Q5TEA3 1177 aa11.39□□□□□ -0.59
HDAC3-202ENST00000459727 SLC12A5Q9H2X9 1139 aa11.39□□□□□ -0.59
HDAC3-202ENST00000459727 YTHDC2Q9H6S0 1430 aaKnown RBP11.38□□□□□ -0.59
HDAC3-202ENST00000459727 MTHFSP49914 203 aa11.38□□□□□ -0.59
HDAC3-202ENST00000459727 HDGFL2Q7Z4V5 671 aaPredicted RBP11.38□□□□□ -0.59
HDAC3-202ENST00000459727 TCP11L2Q8N4U5 519 aa11.38□□□□□ -0.59
HDAC3-202ENST00000459727 CLUAP1Q96AJ1 413 aa11.38□□□□□ -0.59
HDAC3-202ENST00000459727 ATP7BP35670 1465 aa11.38□□□□□ -0.59
HDAC3-202ENST00000459727 PAK3O75914 559 aaPredicted RBP11.37□□□□□ -0.59
HDAC3-202ENST00000459727 RAPGEF3O95398 923 aa11.37□□□□□ -0.59
HDAC3-202ENST00000459727 IDI1Q13907 227 aa11.37□□□□□ -0.59
HDAC3-202ENST00000459727 YEATS2Q9ULM3 1422 aa11.36□□□□□ -0.59
HDAC3-202ENST00000459727 TMEM132EQ6IEE7 984 aa11.36□□□□□ -0.59
HDAC3-202ENST00000459727 NPM2Q86SE8 214 aaKnown RBP11.36□□□□□ -0.59
HDAC3-202ENST00000459727 ZNF428Q96B54 188 aa11.36□□□□□ -0.59
HDAC3-202ENST00000459727 A0A1W2PP64 1363 aa11.36□□□□□ -0.59
HDAC3-202ENST00000459727 CDC42BPGQ6DT37 1551 aa11.36□□□□□ -0.59
HDAC3-202ENST00000459727 SPATA31D1Q6ZQQ2 1576 aa11.36□□□□□ -0.59
HDAC3-202ENST00000459727 NEFMP07197 916 aa11.35□□□□□ -0.59
HDAC3-202ENST00000459727 RARSP54136 660 aaKnown RBP11.35□□□□□ -0.59
HDAC3-202ENST00000459727 SRPK2P78362 688 aaKnown RBP11.35□□□□□ -0.59
HDAC3-202ENST00000459727 CHMP4BQ9H444 224 aaKnown RBP11.35□□□□□ -0.59
HDAC3-202ENST00000459727 POGKQ9P215 609 aa11.35□□□□□ -0.59
HDAC3-202ENST00000459727 ALKQ9UM73 1620 aa11.35□□□□□ -0.59
HDAC3-202ENST00000459727 U2AF1L5P0DN76 240 aaPredicted RBP11.34□□□□□ -0.59
HDAC3-202ENST00000459727 U2AF1Q01081 240 aaKnown RBP eCLIP11.34□□□□□ -0.59
HDAC3-202ENST00000459727 CALD1Q05682 793 aaKnown RBP11.34□□□□□ -0.59
HDAC3-202ENST00000459727 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.34□□□□□ -0.59
HDAC3-202ENST00000459727 COL3A1P02461 1466 aaPredicted RBP11.33□□□□□ -0.6
HDAC3-202ENST00000459727 DEKP35659 375 aaKnown RBP11.33□□□□□ -0.6
HDAC3-202ENST00000459727 HDGFP51858 240 aaKnown RBP11.33□□□□□ -0.6
HDAC3-202ENST00000459727 RWDD1Q9H446 243 aaPredicted RBP11.33□□□□□ -0.6
HDAC3-202ENST00000459727 UPF2Q9HAU5 1272 aaKnown RBP11.33□□□□□ -0.6
HDAC3-202ENST00000459727 SPINK5Q9NQ38 1064 aaPredicted RBP11.33□□□□□ -0.6
HDAC3-202ENST00000459727 ARHGEF40Q8TER5 1519 aa11.33□□□□□ -0.6
HDAC3-202ENST00000459727 KIF16BQ96L93 1317 aa11.33□□□□□ -0.6
HDAC3-202ENST00000459727 VIRMAQ69YN4 1812 aaKnown RBP11.32□□□□□ -0.6
HDAC3-202ENST00000459727 PNPLA6Q8IY17 1366 aa11.32□□□□□ -0.6
HDAC3-202ENST00000459727 BCAR3O75815 825 aa11.32□□□□□ -0.6
HDAC3-202ENST00000459727 NBR1Q14596 966 aa11.32□□□□□ -0.6
HDAC3-202ENST00000459727 C8orf34Q49A92 452 aa11.32□□□□□ -0.6
HDAC3-202ENST00000459727 ZKSCAN2Q63HK3 967 aa11.32□□□□□ -0.6
HDAC3-202ENST00000459727 STAG3Q9UJ98 1225 aa11.32□□□□□ -0.6
HDAC3-202ENST00000459727 KIF20BQ96Q89 1820 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms