RNA–Protein interactions for RNA: ENST00000448183.6

NEDD9-204, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best)

Gene NEDD9, Length 4,934 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-204ENST00000448183 ABCF1Q8NE71 845 aaKnown RBP eCLIP9.39□□□□□ -0.91
NEDD9-204ENST00000448183 AK7Q96M32 723 aa9.39□□□□□ -0.91
NEDD9-204ENST00000448183 PATL2C9JE40 543 aaKnown RBP9.39□□□□□ -0.91
NEDD9-204ENST00000448183 SAFBQ15424 915 aaKnown RBP eCLIP9.39□□□□□ -0.911e-6■■■□□ 14.6
NEDD9-204ENST00000448183 NECTIN2Q92692 538 aa9.39□□□□□ -0.91
NEDD9-204ENST00000448183 RUSC2Q8N2Y8 1516 aa9.38□□□□□ -0.91
NEDD9-204ENST00000448183 LETM1O95202 739 aaPredicted RBP9.38□□□□□ -0.91
NEDD9-204ENST00000448183 FBXW7Q969H0 707 aa9.38□□□□□ -0.91
NEDD9-204ENST00000448183 SDF4Q9BRK5 362 aa9.38□□□□□ -0.91
NEDD9-204ENST00000448183 MIA2Q96PC5 1412 aa9.38□□□□□ -0.91
NEDD9-204ENST00000448183 CCDC173Q0VFZ6 552 aa9.38□□□□□ -0.91
NEDD9-204ENST00000448183 ADAMTS8Q9UP79 889 aa9.38□□□□□ -0.91
NEDD9-204ENST00000448183 WASHC2AQ641Q2 1341 aa9.38□□□□□ -0.91
NEDD9-204ENST00000448183 MCM2P49736 904 aa9.38□□□□□ -0.91
NEDD9-204ENST00000448183 AMOTL1Q8IY63 956 aa9.38□□□□□ -0.91
NEDD9-204ENST00000448183 MYOM3Q5VTT5 1437 aa9.37□□□□□ -0.91
NEDD9-204ENST00000448183 NFXL1Q6ZNB6 911 aa9.37□□□□□ -0.91
NEDD9-204ENST00000448183 TRIM5Q9C035 493 aa9.37□□□□□ -0.91
NEDD9-204ENST00000448183 RABEP1Q15276 862 aa9.37□□□□□ -0.91
NEDD9-204ENST00000448183 CDCA7LQ96GN5 454 aa9.37□□□□□ -0.91
NEDD9-204ENST00000448183 TSPYL4Q9UJ04 414 aa9.37□□□□□ -0.91
NEDD9-204ENST00000448183 RALYLQ86SE5 291 aaKnown RBP9.37□□□□□ -0.91
NEDD9-204ENST00000448183 ERICH2A1L162 156 aa9.36□□□□□ -0.91
NEDD9-204ENST00000448183 CCDC66A2RUB6 948 aa9.36□□□□□ -0.91
NEDD9-204ENST00000448183 PSMA5P28066 241 aa9.36□□□□□ -0.91
NEDD9-204ENST00000448183 PDE3AQ14432 1141 aa9.36□□□□□ -0.91
NEDD9-204ENST00000448183 PDZRN3Q9UPQ7 1066 aa9.36□□□□□ -0.91
NEDD9-204ENST00000448183 OLFM4Q6UX06 510 aa9.36□□□□□ -0.91
NEDD9-204ENST00000448183 NOL10Q9BSC4 688 aaKnown RBP9.36□□□□□ -0.91
NEDD9-204ENST00000448183 TSPY26PQ9H489 355 aa9.36□□□□□ -0.91
NEDD9-204ENST00000448183 NEK4P51957 841 aa9.36□□□□□ -0.91
NEDD9-204ENST00000448183 IL27Q8NEV9 243 aa9.36□□□□□ -0.91
NEDD9-204ENST00000448183 BACH2Q9BYV9 841 aa9.36□□□□□ -0.91
NEDD9-204ENST00000448183 FGD6Q6ZV73 1430 aa9.36□□□□□ -0.91
NEDD9-204ENST00000448183 PRPF40AO75400 957 aaKnown RBP9.36□□□□□ -0.91
NEDD9-204ENST00000448183 PDCP20941 246 aa9.36□□□□□ -0.91
NEDD9-204ENST00000448183 CWC15Q9P013 229 aaKnown RBP9.36□□□□□ -0.91
NEDD9-204ENST00000448183 FOSBP53539 338 aa9.35□□□□□ -0.91
NEDD9-204ENST00000448183 TCP11L2Q8N4U5 519 aa9.35□□□□□ -0.91
NEDD9-204ENST00000448183 UBTFL1P0CB47 393 aaPredicted RBP9.35□□□□□ -0.91
NEDD9-204ENST00000448183 NINLQ9Y2I6 1382 aa9.35□□□□□ -0.91
NEDD9-204ENST00000448183 ERCC4Q92889 916 aaPredicted RBP9.35□□□□□ -0.91
NEDD9-204ENST00000448183 HMOX1P09601 288 aa9.35□□□□□ -0.91
NEDD9-204ENST00000448183 NAP1L1P55209 391 aaKnown RBP9.34□□□□□ -0.91
NEDD9-204ENST00000448183 CNTROBQ8N137 903 aa9.34□□□□□ -0.91
NEDD9-204ENST00000448183 CFTRP13569 1480 aa9.34□□□□□ -0.91
NEDD9-204ENST00000448183 KINO60870 393 aaKnown RBP9.34□□□□□ -0.91
NEDD9-204ENST00000448183 GNAI3P08754 354 aa9.34□□□□□ -0.91
NEDD9-204ENST00000448183 DHX16O60231 1041 aaKnown RBP9.34□□□□□ -0.91
NEDD9-204ENST00000448183 CLASRPQ8N2M8 674 aaKnown RBP9.34□□□□□ -0.91
NEDD9-204ENST00000448183 PDILTQ8N807 584 aa9.34□□□□□ -0.91
NEDD9-204ENST00000448183 RRP12Q5JTH9 1297 aaKnown RBP9.34□□□□□ -0.92
NEDD9-204ENST00000448183 WWC1Q8IX03 1113 aa9.34□□□□□ -0.92
NEDD9-204ENST00000448183 GCC1Q96CN9 775 aa9.34□□□□□ -0.92
NEDD9-204ENST00000448183 GGNBP2Q9H3C7 697 aa9.33□□□□□ -0.92
NEDD9-204ENST00000448183 KIF21BO75037 1637 aa9.33□□□□□ -0.92
NEDD9-204ENST00000448183 CC2D2AQ9P2K1 1620 aa9.33□□□□□ -0.92
NEDD9-204ENST00000448183 CCP110O43303 1012 aa9.33□□□□□ -0.92
NEDD9-204ENST00000448183 MTHFSP49914 203 aa9.33□□□□□ -0.92
NEDD9-204ENST00000448183 CCDC27Q2M243 656 aa9.33□□□□□ -0.92
NEDD9-204ENST00000448183 CWC22Q9HCG8 908 aaKnown RBP9.33□□□□□ -0.92
NEDD9-204ENST00000448183 BCL11BQ9C0K0 894 aaPredicted RBP9.32□□□□□ -0.92
NEDD9-204ENST00000448183 TCEAL9Q9UHQ7 104 aa9.32□□□□□ -0.92
NEDD9-204ENST00000448183 MRC2Q9UBG0 1479 aa9.32□□□□□ -0.92
NEDD9-204ENST00000448183 H0YHG0 523 aa9.32□□□□□ -0.92
NEDD9-204ENST00000448183 FIBPO43427 364 aa9.32□□□□□ -0.92
NEDD9-204ENST00000448183 WASHC4Q2M389 1173 aa9.32□□□□□ -0.92
NEDD9-204ENST00000448183 VPS37DQ86XT2 251 aa9.32□□□□□ -0.92
NEDD9-204ENST00000448183 NEUROD6Q96NK8 337 aa9.32□□□□□ -0.92
NEDD9-204ENST00000448183 FSD1Q9BTV5 496 aa9.32□□□□□ -0.92
NEDD9-204ENST00000448183 OFD1O75665 1012 aa9.32□□□□□ -0.92
NEDD9-204ENST00000448183 PPP2R1AP30153 589 aa9.32□□□□□ -0.92
NEDD9-204ENST00000448183 SURF6O75683 361 aaKnown RBP9.31□□□□□ -0.92
NEDD9-204ENST00000448183 GRPEL1Q9HAV7 217 aa9.31□□□□□ -0.92
NEDD9-204ENST00000448183 PTPRGP23470 1445 aa9.31□□□□□ -0.92
NEDD9-204ENST00000448183 RAD21O60216 631 aa9.31□□□□□ -0.92
NEDD9-204ENST00000448183 XBP1P17861 261 aa9.31□□□□□ -0.92
NEDD9-204ENST00000448183 RBM10P98175 930 aaKnown RBP9.31□□□□□ -0.92
NEDD9-204ENST00000448183 EXOSC9Q06265 439 aaKnown RBP9.31□□□□□ -0.92
NEDD9-204ENST00000448183 DCTN1Q14203 1278 aa9.31□□□□□ -0.92
NEDD9-204ENST00000448183 CAGE1Q8TC20 777 aa9.31□□□□□ -0.92
NEDD9-204ENST00000448183 SMC2O95347 1197 aa9.31□□□□□ -0.92
NEDD9-204ENST00000448183 RIC3Q7Z5B4 369 aa9.31□□□□□ -0.92
NEDD9-204ENST00000448183 BRMS1Q9HCU9 246 aa9.31□□□□□ -0.92
NEDD9-204ENST00000448183 ERICH3Q5RHP9 1530 aa9.31□□□□□ -0.92
NEDD9-204ENST00000448183 DHX8Q14562 1220 aaKnown RBP9.3□□□□□ -0.92
NEDD9-204ENST00000448183 IFT140Q96RY7 1462 aa9.3□□□□□ -0.92
NEDD9-204ENST00000448183 AKNAQ7Z591 1439 aa9.3□□□□□ -0.92
NEDD9-204ENST00000448183 FMNL2Q96PY5 1086 aa9.3□□□□□ -0.92
NEDD9-204ENST00000448183 TRIM34Q9BYJ4 488 aa9.3□□□□□ -0.92
NEDD9-204ENST00000448183 LAMC3Q9Y6N6 1575 aa9.3□□□□□ -0.92
NEDD9-204ENST00000448183 CUX1P39880 1505 aa9.3□□□□□ -0.92
NEDD9-204ENST00000448183 HIP1O00291 1037 aa9.3□□□□□ -0.92
NEDD9-204ENST00000448183 CCDC192P0DO97 292 aa9.3□□□□□ -0.92
NEDD9-204ENST00000448183 CIZ1Q9ULV3 898 aaPredicted RBP9.3□□□□□ -0.92
NEDD9-204ENST00000448183 PEG3Q9GZU2 1588 aa9.3□□□□□ -0.92
NEDD9-204ENST00000448183 ESPNB1AK53 854 aa9.3□□□□□ -0.92
NEDD9-204ENST00000448183 K7ELQ4 463 aaPredicted RBP9.3□□□□□ -0.92
NEDD9-204ENST00000448183 CALRP27797 417 aaKnown RBP9.3□□□□□ -0.92
NEDD9-204ENST00000448183 EVA1CP58658 441 aa9.3□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms