RNA–Protein interactions for RNA: ENST00000443638.1

TM9SF3-202, Transcript of transmembrane 9 superfamily member 3, humanhuman

TSL 3

Gene TM9SF3, Length 868 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3-202ENST00000443638 LMOD1P29536 600 aaPredicted RBP8.48□□□□□ -1.05
TM9SF3-202ENST00000443638 VAC14Q08AM6 782 aa8.48□□□□□ -1.05
TM9SF3-202ENST00000443638 CDCA7LQ96GN5 454 aa8.48□□□□□ -1.05
TM9SF3-202ENST00000443638 TFIP11Q9UBB9 837 aaKnown RBP8.48□□□□□ -1.05
TM9SF3-202ENST00000443638 RIMBP2O15034 1052 aa8.47□□□□□ -1.05
TM9SF3-202ENST00000443638 NUTM2BA6NNL0 878 aaPredicted RBP8.46□□□□□ -1.06
TM9SF3-202ENST00000443638 NUTM2EB1AL46 878 aaPredicted RBP8.46□□□□□ -1.06
TM9SF3-202ENST00000443638 NUTM2DQ5VT03 806 aaPredicted RBP8.46□□□□□ -1.06
TM9SF3-202ENST00000443638 NUTM2AQ8IVF1 878 aaPredicted RBP8.46□□□□□ -1.06
TM9SF3-202ENST00000443638 ZDHHC16Q969W1 377 aa8.46□□□□□ -1.06
TM9SF3-202ENST00000443638 ZBTB3Q9H5J0 574 aa8.46□□□□□ -1.06
TM9SF3-202ENST00000443638 MAFBQ9Y5Q3 323 aaPredicted RBP8.46□□□□□ -1.06
TM9SF3-202ENST00000443638 SOX11P35716 441 aa8.45□□□□□ -1.06
TM9SF3-202ENST00000443638 PRR7Q8TB68 274 aa8.45□□□□□ -1.06
TM9SF3-202ENST00000443638 DDX11L8A8MPP1 907 aa8.44□□□□□ -1.06
TM9SF3-202ENST00000443638 CTDSPL2Q05D32 466 aa8.44□□□□□ -1.06
TM9SF3-202ENST00000443638 ADAM33Q9BZ11 813 aa8.44□□□□□ -1.06
TM9SF3-202ENST00000443638 ERBB3P21860 1342 aa8.44□□□□□ -1.06
TM9SF3-202ENST00000443638 TXNDC2Q86VQ3 553 aa8.43□□□□□ -1.06
TM9SF3-202ENST00000443638 TMEM134Q9H6X4 195 aa8.43□□□□□ -1.06
TM9SF3-202ENST00000443638 ZSWIM6Q9HCJ5 1215 aa8.43□□□□□ -1.06
TM9SF3-202ENST00000443638 C3orf80F5H4A9 247 aa8.42□□□□□ -1.06
TM9SF3-202ENST00000443638 KDM4AO75164 1064 aa8.42□□□□□ -1.06
TM9SF3-202ENST00000443638 DNAJB2P25686 324 aa8.42□□□□□ -1.06
TM9SF3-202ENST00000443638 ELOAQ14241 798 aaKnown RBP8.42□□□□□ -1.06
TM9SF3-202ENST00000443638 B4GALNT3Q6L9W6 998 aa8.42□□□□□ -1.06
TM9SF3-202ENST00000443638 PCDHGC3Q9UN70 934 aa8.42□□□□□ -1.06
TM9SF3-202ENST00000443638 HOXA2O43364 376 aa8.41□□□□□ -1.06
TM9SF3-202ENST00000443638 USP46P62068 366 aa8.41□□□□□ -1.06
TM9SF3-202ENST00000443638 CDCA8Q53HL2 280 aa8.41□□□□□ -1.06
TM9SF3-202ENST00000443638 DNAJC14Q6Y2X3 702 aaPredicted RBP8.41□□□□□ -1.06
TM9SF3-202ENST00000443638 ZNF454Q8N9F8 522 aa8.41□□□□□ -1.06
TM9SF3-202ENST00000443638 KANK4Q5T7N3 995 aaPredicted RBP8.4□□□□□ -1.06
TM9SF3-202ENST00000443638 PHLDB3Q6NSJ2 640 aa8.4□□□□□ -1.06
TM9SF3-202ENST00000443638 TBC1D9Q6ZT07 1266 aa8.4□□□□□ -1.06
TM9SF3-202ENST00000443638 LRRN4Q8WUT4 740 aa8.4□□□□□ -1.06
TM9SF3-202ENST00000443638 KIAA1522Q9P206 1035 aaPredicted RBP8.4□□□□□ -1.06
TM9SF3-202ENST00000443638 FDX1P10109 184 aa8.39□□□□□ -1.07
TM9SF3-202ENST00000443638 ATP9BO43861 1147 aa8.38□□□□□ -1.07
TM9SF3-202ENST00000443638 GCGRP47871 477 aa8.38□□□□□ -1.07
TM9SF3-202ENST00000443638 RSPH4AQ5TD94 716 aa8.38□□□□□ -1.07
TM9SF3-202ENST00000443638 EPS8L1Q8TE68 723 aa8.38□□□□□ -1.07
TM9SF3-202ENST00000443638 PUS7Q96PZ0 661 aaKnown RBP8.38□□□□□ -1.07
TM9SF3-202ENST00000443638 USP35Q9P2H5 1018 aa8.38□□□□□ -1.07
TM9SF3-202ENST00000443638 TSKSQ9UJT2 592 aa8.38□□□□□ -1.07
TM9SF3-202ENST00000443638 ZMIZ1Q9ULJ6 1067 aa8.38□□□□□ -1.07
TM9SF3-202ENST00000443638 COL9A1P20849 921 aa8.37□□□□□ -1.07
TM9SF3-202ENST00000443638 NOM1Q5C9Z4 860 aaKnown RBP8.37□□□□□ -1.07
TM9SF3-202ENST00000443638 VARS2Q5ST30 1063 aaKnown RBP8.37□□□□□ -1.07
TM9SF3-202ENST00000443638 CFAP99D6REC4 459 aa8.36□□□□□ -1.07
TM9SF3-202ENST00000443638 ERCC3P19447 782 aa8.36□□□□□ -1.07
TM9SF3-202ENST00000443638 TMEM164Q5U3C3 297 aa8.36□□□□□ -1.07
TM9SF3-202ENST00000443638 NUDT18Q6ZVK8 323 aa8.36□□□□□ -1.07
TM9SF3-202ENST00000443638 HELBQ8NG08 1087 aaPredicted RBP8.36□□□□□ -1.07
TM9SF3-202ENST00000443638 CCER1Q8TC90 406 aaPredicted RBP8.36□□□□□ -1.07
TM9SF3-202ENST00000443638 SEMA3FQ13275 785 aa8.35□□□□□ -1.07
TM9SF3-202ENST00000443638 GPR153Q6NV75 609 aa8.35□□□□□ -1.07
TM9SF3-202ENST00000443638 ZNF687Q8N1G0 1237 aa8.35□□□□□ -1.07
TM9SF3-202ENST00000443638 STK32AQ8WU08 396 aa8.35□□□□□ -1.07
TM9SF3-202ENST00000443638 HMGB1P09429 215 aaKnown RBP8.34□□□□□ -1.07
TM9SF3-202ENST00000443638 HSP90B1P14625 803 aaKnown RBP8.34□□□□□ -1.07
TM9SF3-202ENST00000443638 MTMR2Q13614 643 aa8.34□□□□□ -1.07
TM9SF3-202ENST00000443638 NBPF26B4DH59 902 aa8.33□□□□□ -1.08
TM9SF3-202ENST00000443638 SSFA2P28290 1259 aa8.33□□□□□ -1.08
TM9SF3-202ENST00000443638 GUCA2AQ02747 115 aa8.33□□□□□ -1.08
TM9SF3-202ENST00000443638 RDH13Q8NBN7 331 aa8.33□□□□□ -1.08
TM9SF3-202ENST00000443638 TATDN2Q93075 761 aa8.33□□□□□ -1.08
TM9SF3-202ENST00000443638 HLA-CQ95604 372 aa8.33□□□□□ -1.08
TM9SF3-202ENST00000443638 SLAIN2Q9P270 581 aa8.33□□□□□ -1.08
TM9SF3-202ENST00000443638 ZNF16P17020 682 aaPredicted RBP8.32□□□□□ -1.08
TM9SF3-202ENST00000443638 SLF2Q8IX21 1173 aa8.32□□□□□ -1.08
TM9SF3-202ENST00000443638 NFATC2IPQ8NCF5 419 aa8.32□□□□□ -1.08
TM9SF3-202ENST00000443638 RNF166Q96A37 237 aaPredicted RBP8.32□□□□□ -1.08
TM9SF3-202ENST00000443638 MRRFQ96E11 262 aaKnown RBP8.32□□□□□ -1.08
TM9SF3-202ENST00000443638 MYT1LQ9UL68 1186 aa8.32□□□□□ -1.08
TM9SF3-202ENST00000443638 SIRT1Q96EB6 747 aa8.31□□□□□ -1.08
TM9SF3-202ENST00000443638 PNMA3Q9UL41 463 aa8.31□□□□□ -1.08
TM9SF3-202ENST00000443638 PPP1R3GB7ZBB8 358 aa8.3□□□□□ -1.08
TM9SF3-202ENST00000443638 ARID4AP29374 1257 aaPredicted RBP8.3□□□□□ -1.08
TM9SF3-202ENST00000443638 NOVA2Q9UNW9 492 aaKnown RBP8.3□□□□□ -1.08
TM9SF3-202ENST00000443638 SOWAHDA6NJG2 315 aa8.29□□□□□ -1.08
TM9SF3-202ENST00000443638 TRIM6-TRIM34B2RNG4 842 aa8.29□□□□□ -1.08
TM9SF3-202ENST00000443638 PIK3CDO00329 1044 aa8.29□□□□□ -1.08
TM9SF3-202ENST00000443638 SLC10A3P09131 477 aa8.29□□□□□ -1.08
TM9SF3-202ENST00000443638 EIF4G2P78344 907 aaKnown RBP eCLIP8.29□□□□□ -1.08
TM9SF3-202ENST00000443638 FAM69CQ0P6D2 419 aa8.29□□□□□ -1.08
TM9SF3-202ENST00000443638 NR6A1Q15406 480 aa8.29□□□□□ -1.08
TM9SF3-202ENST00000443638 PLEKHM2Q8IWE5 1019 aa8.29□□□□□ -1.08
TM9SF3-202ENST00000443638 BCL2L12Q9HB09 334 aa8.29□□□□□ -1.08
TM9SF3-202ENST00000443638 USP17L3A6NCW0 530 aa8.27□□□□□ -1.09
TM9SF3-202ENST00000443638 USP17L4A6NCW7 530 aa8.27□□□□□ -1.09
TM9SF3-202ENST00000443638 FAM196BA6NMK8 535 aa8.27□□□□□ -1.09
TM9SF3-202ENST00000443638 NUDT7P0C024 238 aa8.27□□□□□ -1.09
TM9SF3-202ENST00000443638 NR1H3Q13133 447 aa8.27□□□□□ -1.09
TM9SF3-202ENST00000443638 ARSIQ5FYB1 569 aa8.27□□□□□ -1.09
TM9SF3-202ENST00000443638 USP17L2Q6R6M4 530 aa8.27□□□□□ -1.09
TM9SF3-202ENST00000443638 USP17L1Q7RTZ2 530 aa8.27□□□□□ -1.09
TM9SF3-202ENST00000443638 PACS2Q86VP3 889 aa8.26□□□□□ -1.09
TM9SF3-202ENST00000443638 PNMA1Q8ND90 353 aa8.26□□□□□ -1.09
TM9SF3-202ENST00000443638 TSC1Q92574 1164 aa8.26□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms