RNA–Protein interactions for RNA: ENST00000426778.5

ERCC3-202, Transcript of ERCC excision repair 3, TFIIH core complex helicase subunit, humanhuman

TSL 2

Gene ERCC3, Length 2,916 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3-202ENST00000426778 ANO8Q9HCE9 1232 aaPredicted RBP18.51■□□□□ 0.55
ERCC3-202ENST00000426778 USP19O94966 1318 aa18.51■□□□□ 0.55
ERCC3-202ENST00000426778 SPRYD3Q8NCJ5 442 aa18.5■□□□□ 0.55
ERCC3-202ENST00000426778 RUNDC1Q96C34 613 aa18.5■□□□□ 0.55
ERCC3-202ENST00000426778 CGNL1Q0VF96 1302 aa18.5■□□□□ 0.55
ERCC3-202ENST00000426778 KIF1BO60333 1816 aa18.49■□□□□ 0.55
ERCC3-202ENST00000426778 MROH1Q8NDA8 1641 aa18.49■□□□□ 0.55
ERCC3-202ENST00000426778 UHRF1BP1LA0JNW5 1464 aa18.49■□□□□ 0.55
ERCC3-202ENST00000426778 PDE3AQ14432 1141 aa18.48■□□□□ 0.55
ERCC3-202ENST00000426778 INO80Q9ULG1 1556 aaPredicted RBP18.48■□□□□ 0.55
ERCC3-202ENST00000426778 POLR3AO14802 1390 aaPredicted RBP18.48■□□□□ 0.55
ERCC3-202ENST00000426778 U2SURPO15042 1029 aaKnown RBP18.47■□□□□ 0.55
ERCC3-202ENST00000426778 PPRC1Q5VV67 1664 aaKnown RBP18.47■□□□□ 0.55
ERCC3-202ENST00000426778 ARXQ96QS3 562 aa18.46■□□□□ 0.55
ERCC3-202ENST00000426778 VWDEQ8N2E2 1590 aa18.46■□□□□ 0.55
ERCC3-202ENST00000426778 GGNBP2Q9H3C7 697 aa18.45■□□□□ 0.54
ERCC3-202ENST00000426778 PDZRN3Q9UPQ7 1066 aa18.45■□□□□ 0.54
ERCC3-202ENST00000426778 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.45■□□□□ 0.54
ERCC3-202ENST00000426778 C14orf93Q9H972 538 aaKnown RBP18.44■□□□□ 0.54
ERCC3-202ENST00000426778 MYOM2P54296 1465 aa18.44■□□□□ 0.54
ERCC3-202ENST00000426778 ASXL2Q76L83 1435 aa18.44■□□□□ 0.54
ERCC3-202ENST00000426778 EFCAB6Q5THR3 1501 aa18.43■□□□□ 0.54
ERCC3-202ENST00000426778 RAPGEF3O95398 923 aa18.43■□□□□ 0.54
ERCC3-202ENST00000426778 NPATQ14207 1427 aa18.42■□□□□ 0.54
ERCC3-202ENST00000426778 KIAA1210Q9ULL0 1709 aa18.42■□□□□ 0.54
ERCC3-202ENST00000426778 FBLN1P23142 703 aa18.42■□□□□ 0.54
ERCC3-202ENST00000426778 SHPRHQ149N8 1683 aa18.42■□□□□ 0.54
ERCC3-202ENST00000426778 ABCA9Q8IUA7 1624 aa18.42■□□□□ 0.54
ERCC3-202ENST00000426778 CFAP53Q96M91 514 aa18.41■□□□□ 0.54
ERCC3-202ENST00000426778 KIDINS220Q9ULH0 1771 aa18.41■□□□□ 0.54
ERCC3-202ENST00000426778 SRPK2P78362 688 aaKnown RBP18.4■□□□□ 0.54
ERCC3-202ENST00000426778 FTSJ3Q8IY81 847 aaKnown RBP18.39■□□□□ 0.54
ERCC3-202ENST00000426778 POGKQ9P215 609 aa18.39■□□□□ 0.54
ERCC3-202ENST00000426778 QRICH2Q9H0J4 1663 aa18.39■□□□□ 0.53
ERCC3-202ENST00000426778 SLC24A1O60721 1099 aa18.39■□□□□ 0.53
ERCC3-202ENST00000426778 EXOSC9Q06265 439 aaKnown RBP18.39■□□□□ 0.53
ERCC3-202ENST00000426778 MINK1Q8N4C8 1332 aaPredicted RBP18.38■□□□□ 0.53
ERCC3-202ENST00000426778 MAPK8IP3Q9UPT6 1336 aa18.38■□□□□ 0.53
ERCC3-202ENST00000426778 IFT172Q9UG01 1749 aa18.38■□□□□ 0.53
ERCC3-202ENST00000426778 SMC4Q9NTJ3 1288 aa18.37■□□□□ 0.53
ERCC3-202ENST00000426778 ZNF518AQ6AHZ1 1483 aa18.37■□□□□ 0.53
ERCC3-202ENST00000426778 PMFBP1Q8TBY8 1022 aa18.36■□□□□ 0.53
ERCC3-202ENST00000426778 ARAP3Q8WWN8 1544 aa18.36■□□□□ 0.53
ERCC3-202ENST00000426778 WDR63Q8IWG1 891 aa18.36■□□□□ 0.53
ERCC3-202ENST00000426778 PHF23Q9BUL5 403 aaPredicted RBP18.36■□□□□ 0.53
ERCC3-202ENST00000426778 ITPRIPQ8IWB1 547 aa18.35■□□□□ 0.53
ERCC3-202ENST00000426778 EVC2Q86UK5 1308 aa18.35■□□□□ 0.53
ERCC3-202ENST00000426778 SBNO2Q9Y2G9 1366 aa18.35■□□□□ 0.53
ERCC3-202ENST00000426778 NRXN1Q9ULB1 1477 aa18.35■□□□□ 0.53
ERCC3-202ENST00000426778 ADGRB3O60242 1522 aa18.35■□□□□ 0.53
ERCC3-202ENST00000426778 IQSEC2Q5JU85 1478 aa18.34■□□□□ 0.53
ERCC3-202ENST00000426778 MFAP1P55081 439 aaKnown RBP18.34■□□□□ 0.53
ERCC3-202ENST00000426778 NGEFQ8N5V2 710 aa18.34■□□□□ 0.53
ERCC3-202ENST00000426778 MYH16Q9H6N6 1097 aa18.34■□□□□ 0.53
ERCC3-202ENST00000426778 ADGRB1O14514 1584 aa18.34■□□□□ 0.53
ERCC3-202ENST00000426778 NPM1P06748 294 aaKnown RBP eCLIP18.33■□□□□ 0.53
ERCC3-202ENST00000426778 MVPQ14764 893 aaKnown RBP18.33■□□□□ 0.53
ERCC3-202ENST00000426778 SSH1Q8WYL5 1049 aa18.33■□□□□ 0.53
ERCC3-202ENST00000426778 DZIP1LQ8IYY4 767 aaKnown RBP18.33■□□□□ 0.52
ERCC3-202ENST00000426778 TRIM27P14373 513 aa18.33■□□□□ 0.52
ERCC3-202ENST00000426778 ZKSCAN2Q63HK3 967 aa18.33■□□□□ 0.52
ERCC3-202ENST00000426778 RWDD1Q9H446 243 aaPredicted RBP18.33■□□□□ 0.52
ERCC3-202ENST00000426778 IDI1Q13907 227 aa18.32■□□□□ 0.52
ERCC3-202ENST00000426778 TBC1D2Q9BYX2 928 aa18.32■□□□□ 0.52
ERCC3-202ENST00000426778 NLRP1Q9C000 1473 aa18.32■□□□□ 0.52
ERCC3-202ENST00000426778 BECN1Q14457 450 aa18.31■□□□□ 0.52
ERCC3-202ENST00000426778 A0A1W2PP64 1363 aa18.31■□□□□ 0.52
ERCC3-202ENST00000426778 MYO3AQ8NEV4 1616 aa18.31■□□□□ 0.52
ERCC3-202ENST00000426778 UPF2Q9HAU5 1272 aaKnown RBP18.31■□□□□ 0.52
ERCC3-202ENST00000426778 TMPOP42166 694 aaKnown RBP18.3■□□□□ 0.52
ERCC3-202ENST00000426778 NOB1Q9ULX3 412 aaKnown RBP18.3■□□□□ 0.52
ERCC3-202ENST00000426778 TULP4Q9NRJ4 1543 aa18.3■□□□□ 0.52
ERCC3-202ENST00000426778 TRIM35Q9UPQ4 493 aa18.3■□□□□ 0.52
ERCC3-202ENST00000426778 PPLO60437 1756 aa18.3■□□□□ 0.52
ERCC3-202ENST00000426778 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.29■□□□□ 0.52
ERCC3-202ENST00000426778 NINLQ9Y2I6 1382 aa18.29■□□□□ 0.52
ERCC3-202ENST00000426778 CD109Q6YHK3 1445 aa18.29■□□□□ 0.52
ERCC3-202ENST00000426778 VIRMAQ69YN4 1812 aaKnown RBP18.29■□□□□ 0.52
ERCC3-202ENST00000426778 RIPK4P57078 832 aa18.29■□□□□ 0.52
ERCC3-202ENST00000426778 TBC1D32Q96NH3 1257 aa18.29■□□□□ 0.52
ERCC3-202ENST00000426778 PRAM1Q96QH2 718 aa18.29■□□□□ 0.52
ERCC3-202ENST00000426778 GZF1Q9H116 711 aaPredicted RBP18.29■□□□□ 0.52
ERCC3-202ENST00000426778 ANKRD36BQ8N2N9 1353 aa18.28■□□□□ 0.52
ERCC3-202ENST00000426778 VGFO15240 615 aaPredicted RBP18.28■□□□□ 0.52
ERCC3-202ENST00000426778 THUMPD2Q9BTF0 503 aaKnown RBP18.28■□□□□ 0.52
ERCC3-202ENST00000426778 FRMPD1Q5SYB0 1578 aa18.28■□□□□ 0.52
ERCC3-202ENST00000426778 TMEM57Q8N5G2 664 aa18.27■□□□□ 0.52
ERCC3-202ENST00000426778 ZC3H13Q5T200 1668 aaKnown RBP18.27■□□□□ 0.52
ERCC3-202ENST00000426778 GLI2P10070 1586 aa18.27■□□□□ 0.52
ERCC3-202ENST00000426778 ELL2O00472 640 aaPredicted RBP18.27■□□□□ 0.52
ERCC3-202ENST00000426778 FYB1O15117 783 aa18.27■□□□□ 0.52
ERCC3-202ENST00000426778 SETBP1Q9Y6X0 1596 aa18.26■□□□□ 0.51
ERCC3-202ENST00000426778 CCDC27Q2M243 656 aa18.26■□□□□ 0.51
ERCC3-202ENST00000426778 PLEKHF1Q96S99 279 aa18.26■□□□□ 0.51
ERCC3-202ENST00000426778 FBXO31Q5XUX0 539 aaPredicted RBP18.25■□□□□ 0.51
ERCC3-202ENST00000426778 HMOX1P09601 288 aa18.25■□□□□ 0.51
ERCC3-202ENST00000426778 C1orf115Q9H7X2 142 aa18.25■□□□□ 0.51
ERCC3-202ENST00000426778 SIGLEC1Q9BZZ2 1709 aa18.25■□□□□ 0.51
ERCC3-202ENST00000426778 NEURL4Q96JN8 1562 aa18.24■□□□□ 0.51
ERCC3-202ENST00000426778 LNPKQ9C0E8 428 aa18.24■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms