RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 THAP11Q96EK4 314 aa4.91□□□□□ -1.62
VPS13A-208ENST00000423463 C6orf229H3BNL8 230 aa4.91□□□□□ -1.62
VPS13A-208ENST00000423463 RIC3Q7Z5B4 369 aa4.91□□□□□ -1.62
VPS13A-208ENST00000423463 SPSB2Q99619 263 aa4.91□□□□□ -1.62
VPS13A-208ENST00000423463 S1PR4O95977 384 aa4.9□□□□□ -1.62
VPS13A-208ENST00000423463 CLK2P49760 499 aaKnown RBP4.9□□□□□ -1.62
VPS13A-208ENST00000423463 FBXO31Q5XUX0 539 aaPredicted RBP4.9□□□□□ -1.62
VPS13A-208ENST00000423463 PROCA1Q8NCQ7 364 aaPredicted RBP4.9□□□□□ -1.62
VPS13A-208ENST00000423463 CABLES1Q8TDN4 633 aa4.9□□□□□ -1.62
VPS13A-208ENST00000423463 PPEF1O14829 653 aaPredicted RBP4.89□□□□□ -1.63
VPS13A-208ENST00000423463 FMNL1O95466 1100 aaPredicted RBP4.89□□□□□ -1.63
VPS13A-208ENST00000423463 ADH1BP00325 375 aa4.89□□□□□ -1.63
VPS13A-208ENST00000423463 DIXDC1Q155Q3 683 aa4.89□□□□□ -1.63
VPS13A-208ENST00000423463 PPP1R18Q6NYC8 613 aa4.89□□□□□ -1.63
VPS13A-208ENST00000423463 BRICD5Q6PL45 260 aa4.89□□□□□ -1.63
VPS13A-208ENST00000423463 FAM160A2Q8N612 972 aaPredicted RBP4.89□□□□□ -1.63
VPS13A-208ENST00000423463 SPTLC1O15269 473 aa4.88□□□□□ -1.63
VPS13A-208ENST00000423463 HRCP23327 699 aa4.88□□□□□ -1.63
VPS13A-208ENST00000423463 SH3D19Q5HYK7 790 aa4.88□□□□□ -1.63
VPS13A-208ENST00000423463 MTMR2Q13614 643 aa4.88□□□□□ -1.63
VPS13A-208ENST00000423463 TSC1Q92574 1164 aa4.88□□□□□ -1.63
VPS13A-208ENST00000423463 USB1Q9BQ65 265 aaKnown RBP4.88□□□□□ -1.63
VPS13A-208ENST00000423463 RSPH6AQ9H0K4 717 aa4.88□□□□□ -1.63
VPS13A-208ENST00000423463 CFAP99D6REC4 459 aa4.87□□□□□ -1.63
VPS13A-208ENST00000423463 Q3C1V9 767 aa4.87□□□□□ -1.63
VPS13A-208ENST00000423463 SLC6A16Q9GZN6 736 aa4.87□□□□□ -1.63
VPS13A-208ENST00000423463 NUTM2BA6NNL0 878 aaPredicted RBP4.87□□□□□ -1.63
VPS13A-208ENST00000423463 NUTM2EB1AL46 878 aaPredicted RBP4.87□□□□□ -1.63
VPS13A-208ENST00000423463 RNF223E7ERA6 249 aa4.87□□□□□ -1.63
VPS13A-208ENST00000423463 SKIV2LQ15477 1246 aaKnown RBP4.87□□□□□ -1.63
VPS13A-208ENST00000423463 NUTM2DQ5VT03 806 aaPredicted RBP4.87□□□□□ -1.63
VPS13A-208ENST00000423463 NUTM2AQ8IVF1 878 aaPredicted RBP4.87□□□□□ -1.63
VPS13A-208ENST00000423463 A0A0G2JS52 829 aa4.86□□□□□ -1.63
VPS13A-208ENST00000423463 RTL5Q5HYW3 569 aaPredicted RBP4.86□□□□□ -1.63
VPS13A-208ENST00000423463 RETREG3Q86VR2 466 aa4.86□□□□□ -1.63
VPS13A-208ENST00000423463 PRR7Q8TB68 274 aa4.86□□□□□ -1.63
VPS13A-208ENST00000423463 GNL3Q9BVP2 549 aaKnown RBP eCLIP4.86□□□□□ -1.63
VPS13A-208ENST00000423463 ZBTB3Q9H5J0 574 aa4.86□□□□□ -1.63
VPS13A-208ENST00000423463 SALL2Q9Y467 1007 aaPredicted RBP4.86□□□□□ -1.63
VPS13A-208ENST00000423463 FCF1Q9Y324 198 aaKnown RBP4.86□□□□□ -1.63
VPS13A-208ENST00000423463 NACADO15069 1562 aa4.86□□□□□ -1.63
VPS13A-208ENST00000423463 PLA2G2CQ5R387 149 aa4.85□□□□□ -1.63
VPS13A-208ENST00000423463 RB1CC1Q8TDY2 1594 aa4.85□□□□□ -1.63
VPS13A-208ENST00000423463 LILRB3O75022 631 aa4.85□□□□□ -1.63
VPS13A-208ENST00000423463 GJA5P36382 358 aa4.85□□□□□ -1.63
VPS13A-208ENST00000423463 IFFO2Q5TF58 517 aa4.85□□□□□ -1.63
VPS13A-208ENST00000423463 MYO15BQ96JP2 1530 aa4.84□□□□□ -1.63
VPS13A-208ENST00000423463 MSS51Q4VC12 460 aa4.84□□□□□ -1.63
VPS13A-208ENST00000423463 EIF4ENIF1Q9NRA8 985 aaKnown RBP4.84□□□□□ -1.63
VPS13A-208ENST00000423463 PER1O15534 1290 aaPredicted RBP4.84□□□□□ -1.63
VPS13A-208ENST00000423463 PCMTD1Q96MG8 357 aaPredicted RBP4.84□□□□□ -1.63
VPS13A-208ENST00000423463 PRPF38BQ5VTL8 546 aaKnown RBP4.83□□□□□ -1.64
VPS13A-208ENST00000423463 ZCCHC6Q5VYS8 1495 aaKnown RBP4.83□□□□□ -1.64
VPS13A-208ENST00000423463 CCDC24Q8N4L8 307 aa4.83□□□□□ -1.64
VPS13A-208ENST00000423463 DXOO77932 396 aaKnown RBP4.82□□□□□ -1.64
VPS13A-208ENST00000423463 GGCXP38435 758 aa4.82□□□□□ -1.64
VPS13A-208ENST00000423463 EMID1Q96A84 441 aaPredicted RBP4.82□□□□□ -1.64
VPS13A-208ENST00000423463 GOPCQ9HD26 462 aa4.82□□□□□ -1.64
VPS13A-208ENST00000423463 DCAF1Q9Y4B6 1507 aa4.82□□□□□ -1.64
VPS13A-208ENST00000423463 SPDYE5A6NIY4 337 aa4.82□□□□□ -1.64
VPS13A-208ENST00000423463 JUNDP17535 347 aa4.82□□□□□ -1.64
VPS13A-208ENST00000423463 MMP16P51512 607 aa4.82□□□□□ -1.64
VPS13A-208ENST00000423463 RFC5P40937 340 aa4.81□□□□□ -1.64
VPS13A-208ENST00000423463 CTDSPL2Q05D32 466 aa4.81□□□□□ -1.64
VPS13A-208ENST00000423463 NUDT12Q9BQG2 462 aa4.81□□□□□ -1.64
VPS13A-208ENST00000423463 AP1G2O75843 785 aa4.81□□□□□ -1.64
VPS13A-208ENST00000423463 TUSC1Q2TAM9 212 aa4.81□□□□□ -1.64
VPS13A-208ENST00000423463 ANKLE1Q8NAG6 615 aa4.81□□□□□ -1.64
VPS13A-208ENST00000423463 MAP10Q9P2G4 905 aa4.81□□□□□ -1.64
VPS13A-208ENST00000423463 HELBQ8NG08 1087 aaPredicted RBP4.81□□□□□ -1.64
VPS13A-208ENST00000423463 LRRN4Q8WUT4 740 aa4.81□□□□□ -1.64
VPS13A-208ENST00000423463 PRKD2Q9BZL6 878 aa4.81□□□□□ -1.64
VPS13A-208ENST00000423463 PPP2R2DQ66LE6 453 aa4.8□□□□□ -1.64
VPS13A-208ENST00000423463 PTCRAQ6ISU1 281 aaPredicted RBP4.8□□□□□ -1.64
VPS13A-208ENST00000423463 LIAT1Q6ZQX7 453 aa4.8□□□□□ -1.64
VPS13A-208ENST00000423463 HMX1Q9NP08 348 aaPredicted RBP4.8□□□□□ -1.64
VPS13A-208ENST00000423463 CCNYL3P0C7X3 344 aa4.79□□□□□ -1.64
VPS13A-208ENST00000423463 CTHP32929 405 aa4.79□□□□□ -1.64
VPS13A-208ENST00000423463 PTPRNQ16849 979 aa4.79□□□□□ -1.64
VPS13A-208ENST00000423463 DESI1Q6ICB0 168 aa4.79□□□□□ -1.64
VPS13A-208ENST00000423463 USP17L8P0C7I0 530 aa4.78□□□□□ -1.64
VPS13A-208ENST00000423463 TMEM132AQ24JP5 1023 aa4.78□□□□□ -1.64
VPS13A-208ENST00000423463 EPS8L1Q8TE68 723 aa4.78□□□□□ -1.64
VPS13A-208ENST00000423463 SLC19A1P41440 591 aa4.78□□□□□ -1.64
VPS13A-208ENST00000423463 LYPD8Q6UX82 237 aa4.78□□□□□ -1.64
VPS13A-208ENST00000423463 TRIM32Q13049 653 aa4.77□□□□□ -1.65
VPS13A-208ENST00000423463 LINC01559Q495D7 138 aa4.77□□□□□ -1.65
VPS13A-208ENST00000423463 UNC93B1Q9H1C4 597 aa4.77□□□□□ -1.65
VPS13A-208ENST00000423463 EVA1BQ9NVM1 165 aa4.77□□□□□ -1.65
VPS13A-208ENST00000423463 ZBTB24O43167 697 aaPredicted RBP4.76□□□□□ -1.65
VPS13A-208ENST00000423463 F12P00748 615 aaPredicted RBP4.76□□□□□ -1.65
VPS13A-208ENST00000423463 NR6A1Q15406 480 aa4.76□□□□□ -1.65
VPS13A-208ENST00000423463 SNRKQ9NRH2 765 aa4.76□□□□□ -1.65
VPS13A-208ENST00000423463 KCNH2Q12809 1159 aa4.75□□□□□ -1.65
VPS13A-208ENST00000423463 SPRYD7Q5W111 196 aa4.75□□□□□ -1.65
VPS13A-208ENST00000423463 TNFRSF10AO00220 468 aa4.75□□□□□ -1.65
VPS13A-208ENST00000423463 ZNF697Q5TEC3 545 aa4.75□□□□□ -1.65
VPS13A-208ENST00000423463 MTMR14Q8NCE2 650 aa4.74□□□□□ -1.65
VPS13A-208ENST00000423463 SKOR1P84550 965 aa4.74□□□□□ -1.65
VPS13A-208ENST00000423463 FOXC1Q12948 553 aa4.74□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms