RNA–Protein interactions for RNA: ENST00000418882.2

HMGB1P49-201, Transcript of high mobility group box 1 pseudogene 49, humanhuman

BASIC

Gene HMGB1P49, Length 569 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P49-201ENST00000418882 QPCTQ16769 361 aa10.16□□□□□ -0.78
HMGB1P49-201ENST00000418882 FAM160A2Q8N612 972 aaPredicted RBP10.16□□□□□ -0.78
HMGB1P49-201ENST00000418882 PRDM9Q9NQV7 894 aa10.16□□□□□ -0.78
HMGB1P49-201ENST00000418882 CSPP1Q1MSJ5 1256 aa10.15□□□□□ -0.78
HMGB1P49-201ENST00000418882 IFFO2Q5TF58 517 aa10.15□□□□□ -0.78
HMGB1P49-201ENST00000418882 CABLES1Q8TDN4 633 aa10.15□□□□□ -0.78
HMGB1P49-201ENST00000418882 SPSB2Q99619 263 aa10.15□□□□□ -0.78
HMGB1P49-201ENST00000418882 ADH1BP00325 375 aa10.14□□□□□ -0.79
HMGB1P49-201ENST00000418882 GJA5P36382 358 aa10.14□□□□□ -0.79
HMGB1P49-201ENST00000418882 SKIV2LQ15477 1246 aaKnown RBP10.14□□□□□ -0.79
HMGB1P49-201ENST00000418882 RSPH6AQ9H0K4 717 aa10.14□□□□□ -0.79
HMGB1P49-201ENST00000418882 SALL2Q9Y467 1007 aaPredicted RBP10.14□□□□□ -0.79
HMGB1P49-201ENST00000418882 FMNL1O95466 1100 aaPredicted RBP10.13□□□□□ -0.79
HMGB1P49-201ENST00000418882 HRCP23327 699 aa10.12□□□□□ -0.79
HMGB1P49-201ENST00000418882 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.12□□□□□ -0.79
HMGB1P49-201ENST00000418882 S1PR4O95977 384 aa10.11□□□□□ -0.79
HMGB1P49-201ENST00000418882 Q3C1V9 767 aa10.11□□□□□ -0.79
HMGB1P49-201ENST00000418882 A0A0G2JS52 829 aa10.1□□□□□ -0.79
HMGB1P49-201ENST00000418882 C6orf229H3BNL8 230 aa10.1□□□□□ -0.79
HMGB1P49-201ENST00000418882 LILRB3O75022 631 aa10.1□□□□□ -0.79
HMGB1P49-201ENST00000418882 TUSC1Q2TAM9 212 aa10.1□□□□□ -0.79
HMGB1P49-201ENST00000418882 RTL5Q5HYW3 569 aaPredicted RBP10.1□□□□□ -0.79
HMGB1P49-201ENST00000418882 USB1Q9BQ65 265 aaKnown RBP10.1□□□□□ -0.79
HMGB1P49-201ENST00000418882 MTMR2Q13614 643 aa10.09□□□□□ -0.79
HMGB1P49-201ENST00000418882 PPP1R18Q6NYC8 613 aa10.09□□□□□ -0.79
HMGB1P49-201ENST00000418882 GOPCQ9HD26 462 aa10.09□□□□□ -0.79
HMGB1P49-201ENST00000418882 CFAP99D6REC4 459 aa10.08□□□□□ -0.8
HMGB1P49-201ENST00000418882 PPEF1O14829 653 aaPredicted RBP10.08□□□□□ -0.8
HMGB1P49-201ENST00000418882 MSS51Q4VC12 460 aa10.08□□□□□ -0.8
HMGB1P49-201ENST00000418882 RETREG3Q86VR2 466 aa10.08□□□□□ -0.8
HMGB1P49-201ENST00000418882 SLC6A16Q9GZN6 736 aa10.08□□□□□ -0.8
HMGB1P49-201ENST00000418882 PRPF38BQ5VTL8 546 aaKnown RBP10.07□□□□□ -0.8
HMGB1P49-201ENST00000418882 ZBTB3Q9H5J0 574 aa10.07□□□□□ -0.8
HMGB1P49-201ENST00000418882 RNF223E7ERA6 249 aa10.06□□□□□ -0.8
HMGB1P49-201ENST00000418882 PRR7Q8TB68 274 aa10.06□□□□□ -0.8
HMGB1P49-201ENST00000418882 DXOO77932 396 aaKnown RBP10.04□□□□□ -0.8
HMGB1P49-201ENST00000418882 MMP16P51512 607 aa10.04□□□□□ -0.8
HMGB1P49-201ENST00000418882 PLA2G2CQ5R387 149 aa10.04□□□□□ -0.8
HMGB1P49-201ENST00000418882 PCMTD1Q96MG8 357 aaPredicted RBP10.04□□□□□ -0.8
HMGB1P49-201ENST00000418882 EIF4ENIF1Q9NRA8 985 aaKnown RBP10.04□□□□□ -0.8
HMGB1P49-201ENST00000418882 PPP2R2DQ66LE6 453 aa10.03□□□□□ -0.8
HMGB1P49-201ENST00000418882 EMID1Q96A84 441 aaPredicted RBP10.03□□□□□ -0.8
HMGB1P49-201ENST00000418882 NUTM2BA6NNL0 878 aaPredicted RBP10.02□□□□□ -0.81
HMGB1P49-201ENST00000418882 NUTM2EB1AL46 878 aaPredicted RBP10.02□□□□□ -0.81
HMGB1P49-201ENST00000418882 JUNDP17535 347 aa10.02□□□□□ -0.81
HMGB1P49-201ENST00000418882 NUTM2DQ5VT03 806 aaPredicted RBP10.02□□□□□ -0.81
HMGB1P49-201ENST00000418882 NUTM2AQ8IVF1 878 aaPredicted RBP10.02□□□□□ -0.81
HMGB1P49-201ENST00000418882 SPDYE5A6NIY4 337 aa10.01□□□□□ -0.81
HMGB1P49-201ENST00000418882 PER1O15534 1290 aaPredicted RBP10□□□□□ -0.81
HMGB1P49-201ENST00000418882 ATP1B4Q9UN42 357 aaPredicted RBP10□□□□□ -0.81
HMGB1P49-201ENST00000418882 FCF1Q9Y324 198 aaKnown RBP10□□□□□ -0.81
HMGB1P49-201ENST00000418882 RFC5P40937 340 aa9.99□□□□□ -0.81
HMGB1P49-201ENST00000418882 TMEM132AQ24JP5 1023 aa9.99□□□□□ -0.81
HMGB1P49-201ENST00000418882 ANKLE1Q8NAG6 615 aa9.98□□□□□ -0.81
HMGB1P49-201ENST00000418882 CTDSPL2Q05D32 466 aa9.97□□□□□ -0.81
HMGB1P49-201ENST00000418882 DESI1Q6ICB0 168 aa9.97□□□□□ -0.81
HMGB1P49-201ENST00000418882 TSC1Q92574 1164 aa9.97□□□□□ -0.81
HMGB1P49-201ENST00000418882 GGCXP38435 758 aa9.95□□□□□ -0.82
HMGB1P49-201ENST00000418882 LYPD8Q6UX82 237 aa9.95□□□□□ -0.82
HMGB1P49-201ENST00000418882 PTPRNQ16849 979 aa9.94□□□□□ -0.82
HMGB1P49-201ENST00000418882 PTCRAQ6ISU1 281 aaPredicted RBP9.94□□□□□ -0.82
HMGB1P49-201ENST00000418882 LIAT1Q6ZQX7 453 aa9.94□□□□□ -0.82
HMGB1P49-201ENST00000418882 LRRN4Q8WUT4 740 aa9.94□□□□□ -0.82
HMGB1P49-201ENST00000418882 NUDT12Q9BQG2 462 aa9.94□□□□□ -0.82
HMGB1P49-201ENST00000418882 AP1G2O75843 785 aa9.93□□□□□ -0.82
HMGB1P49-201ENST00000418882 F12P00748 615 aaPredicted RBP9.92□□□□□ -0.82
HMGB1P49-201ENST00000418882 CCNYL3P0C7X3 344 aa9.92□□□□□ -0.82
HMGB1P49-201ENST00000418882 CCDC24Q8N4L8 307 aa9.92□□□□□ -0.82
HMGB1P49-201ENST00000418882 MAP10Q9P2G4 905 aa9.92□□□□□ -0.82
HMGB1P49-201ENST00000418882 USP17L8P0C7I0 530 aa9.91□□□□□ -0.82
HMGB1P49-201ENST00000418882 HELBQ8NG08 1087 aaPredicted RBP9.91□□□□□ -0.82
HMGB1P49-201ENST00000418882 HMX1Q9NP08 348 aaPredicted RBP9.91□□□□□ -0.82
HMGB1P49-201ENST00000418882 PRKD2Q9BZL6 878 aa9.9□□□□□ -0.82
HMGB1P49-201ENST00000418882 EPS8L1Q8TE68 723 aa9.89□□□□□ -0.83
HMGB1P49-201ENST00000418882 EVA1BQ9NVM1 165 aa9.89□□□□□ -0.83
HMGB1P49-201ENST00000418882 SLC19A1P41440 591 aa9.87□□□□□ -0.83
HMGB1P49-201ENST00000418882 KCNH2Q12809 1159 aa9.87□□□□□ -0.83
HMGB1P49-201ENST00000418882 SNRKQ9NRH2 765 aa9.87□□□□□ -0.83
HMGB1P49-201ENST00000418882 TMEM259Q4ZIN3 620 aa9.86□□□□□ -0.83
HMGB1P49-201ENST00000418882 CTHP32929 405 aa9.85□□□□□ -0.83
HMGB1P49-201ENST00000418882 NR6A1Q15406 480 aa9.85□□□□□ -0.83
HMGB1P49-201ENST00000418882 TRIM34Q9BYJ4 488 aa9.85□□□□□ -0.83
HMGB1P49-201ENST00000418882 UNC93B1Q9H1C4 597 aa9.85□□□□□ -0.83
HMGB1P49-201ENST00000418882 TRIM32Q13049 653 aa9.84□□□□□ -0.83
HMGB1P49-201ENST00000418882 SPRYD7Q5W111 196 aa9.84□□□□□ -0.83
HMGB1P49-201ENST00000418882 MTMR14Q8NCE2 650 aa9.84□□□□□ -0.83
HMGB1P49-201ENST00000418882 GJD4Q96KN9 370 aaPredicted RBP9.84□□□□□ -0.83
HMGB1P49-201ENST00000418882 RPIAP49247 311 aa9.83□□□□□ -0.84
HMGB1P49-201ENST00000418882 SKOR1P84550 965 aa9.83□□□□□ -0.84
HMGB1P49-201ENST00000418882 V9GY48 417 aaPredicted RBP9.83□□□□□ -0.84
HMGB1P49-201ENST00000418882 RGS20O76081 388 aa9.82□□□□□ -0.84
HMGB1P49-201ENST00000418882 GPR37L1O60883 481 aa9.81□□□□□ -0.84
HMGB1P49-201ENST00000418882 LINC01559Q495D7 138 aa9.81□□□□□ -0.84
HMGB1P49-201ENST00000418882 TRIM67Q6ZTA4 783 aa9.81□□□□□ -0.84
HMGB1P49-201ENST00000418882 BANK1Q8NDB2 785 aa9.81□□□□□ -0.84
HMGB1P49-201ENST00000418882 BAP1Q92560 729 aa9.8□□□□□ -0.84
HMGB1P49-201ENST00000418882 ZBTB24O43167 697 aaPredicted RBP9.79□□□□□ -0.84
HMGB1P49-201ENST00000418882 MCM6Q14566 821 aa9.79□□□□□ -0.84
HMGB1P49-201ENST00000418882 ZNF697Q5TEC3 545 aa9.79□□□□□ -0.84
HMGB1P49-201ENST00000418882 ZNF598Q86UK7 904 aaKnown RBP9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms