RNA–Protein interactions for RNA: ENST00000413872.6

PHRF1-202, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-202ENST00000413872 FAM184AQ8NB25 1140 aa21.2■□□□□ 0.98
PHRF1-202ENST00000413872 TRIM34Q9BYJ4 488 aa21.19■□□□□ 0.98
PHRF1-202ENST00000413872 WWC1Q8IX03 1113 aa21.19■□□□□ 0.98
PHRF1-202ENST00000413872 H3BQV1 296 aa21.18■□□□□ 0.98
PHRF1-202ENST00000413872 ERC2O15083 957 aa21.18■□□□□ 0.98
PHRF1-202ENST00000413872 IFFO2Q5TF58 517 aa21.18■□□□□ 0.98
PHRF1-202ENST00000413872 RNF20Q5VTR2 975 aa21.18■□□□□ 0.98
PHRF1-202ENST00000413872 CDK19Q9BWU1 502 aa21.18■□□□□ 0.98
PHRF1-202ENST00000413872 CD109Q6YHK3 1445 aa21.18■□□□□ 0.98
PHRF1-202ENST00000413872 ATAD2Q6PL18 1390 aa21.18■□□□□ 0.98
PHRF1-202ENST00000413872 ERBINQ96RT1 1412 aa21.18■□□□□ 0.98
PHRF1-202ENST00000413872 GRIN2AQ12879 1464 aa21.18■□□□□ 0.98
PHRF1-202ENST00000413872 RTEL1-TNFRSF6BF6WH68 1400 aa21.17■□□□□ 0.98
PHRF1-202ENST00000413872 CCDC30Q5VVM6 783 aa21.17■□□□□ 0.98
PHRF1-202ENST00000413872 TATP17735 454 aaPredicted RBP21.16■□□□□ 0.98
PHRF1-202ENST00000413872 PPP2R1AP30153 589 aa21.16■□□□□ 0.98
PHRF1-202ENST00000413872 NBPF1Q3BBV0 1214 aa21.16■□□□□ 0.98
PHRF1-202ENST00000413872 TCP11L2Q8N4U5 519 aa21.15■□□□□ 0.98
PHRF1-202ENST00000413872 TRDNQ13061 729 aa21.14■□□□□ 0.98
PHRF1-202ENST00000413872 UBTFL1P0CB47 393 aaPredicted RBP21.14■□□□□ 0.97
PHRF1-202ENST00000413872 CDK13Q14004 1512 aaKnown RBP21.14■□□□□ 0.97
PHRF1-202ENST00000413872 GNAI3P08754 354 aa21.13■□□□□ 0.97
PHRF1-202ENST00000413872 RBM33Q96EV2 1170 aaKnown RBP21.13■□□□□ 0.97
PHRF1-202ENST00000413872 PDE4AP27815 886 aa21.13■□□□□ 0.97
PHRF1-202ENST00000413872 ADAMTS8Q9UP79 889 aa21.13■□□□□ 0.97
PHRF1-202ENST00000413872 DDX11L8A8MPP1 907 aa21.13■□□□□ 0.97
PHRF1-202ENST00000413872 PRKAR2BP31323 418 aa21.13■□□□□ 0.97
PHRF1-202ENST00000413872 PNISRQ8TF01 805 aaKnown RBP21.13■□□□□ 0.97
PHRF1-202ENST00000413872 DEKP35659 375 aaKnown RBP21.12■□□□□ 0.97
PHRF1-202ENST00000413872 VPS53Q5VIR6 699 aa21.12■□□□□ 0.97
PHRF1-202ENST00000413872 CABP1Q9NZU7 370 aa21.12■□□□□ 0.97
PHRF1-202ENST00000413872 GZF1Q9H116 711 aaPredicted RBP21.12■□□□□ 0.97
PHRF1-202ENST00000413872 APPP05067 770 aa21.11■□□□□ 0.97
PHRF1-202ENST00000413872 SLC12A5Q9H2X9 1139 aa21.11■□□□□ 0.97
PHRF1-202ENST00000413872 ARHGEF11O15085 1522 aa21.1■□□□□ 0.97
PHRF1-202ENST00000413872 TRIM29Q14134 588 aa21.1■□□□□ 0.97
PHRF1-202ENST00000413872 TSHZ2Q9NRE2 1034 aa21.1■□□□□ 0.97
PHRF1-202ENST00000413872 GOLGA6L3A6NEY3 463 aa21.09■□□□□ 0.97
PHRF1-202ENST00000413872 AIMP1Q12904 312 aaKnown RBP21.09■□□□□ 0.97
PHRF1-202ENST00000413872 INTS3Q68E01 1043 aaKnown RBP21.09■□□□□ 0.97
PHRF1-202ENST00000413872 FOXD4L1Q9NU39 408 aa21.09■□□□□ 0.97
PHRF1-202ENST00000413872 KIF14Q15058 1648 aa21.09■□□□□ 0.97
PHRF1-202ENST00000413872 CTDP1Q9Y5B0 961 aaPredicted RBP21.08■□□□□ 0.97
PHRF1-202ENST00000413872 SLC26A8Q96RN1 970 aa21.08■□□□□ 0.97
PHRF1-202ENST00000413872 CPLX1O14810 134 aa21.07■□□□□ 0.96
PHRF1-202ENST00000413872 ADGRL1O94910 1474 aa21.07■□□□□ 0.96
PHRF1-202ENST00000413872 SPG7Q9UQ90 795 aa21.07■□□□□ 0.96
PHRF1-202ENST00000413872 KIF6Q6ZMV9 814 aa21.07■□□□□ 0.96
PHRF1-202ENST00000413872 PEG3Q9GZU2 1588 aa21.06■□□□□ 0.96
PHRF1-202ENST00000413872 ANO2Q9NQ90 1003 aa21.06■□□□□ 0.96
PHRF1-202ENST00000413872 HMGB2P26583 209 aaKnown RBP21.06■□□□□ 0.96
PHRF1-202ENST00000413872 PPP6R1Q9UPN7 881 aa21.06■□□□□ 0.96
PHRF1-202ENST00000413872 ERICH2A1L162 156 aa21.05■□□□□ 0.96
PHRF1-202ENST00000413872 STRN4Q9NRL3 753 aa21.05■□□□□ 0.96
PHRF1-202ENST00000413872 CT47B1P0C2W7 299 aaPredicted RBP21.04■□□□□ 0.96
PHRF1-202ENST00000413872 SKOR2Q2VWA4 1001 aaPredicted RBP21.04■□□□□ 0.96
PHRF1-202ENST00000413872 NBPF8Q3BBV2 869 aa21.04■□□□□ 0.96
PHRF1-202ENST00000413872 PLB1Q6P1J6 1458 aa21.04■□□□□ 0.96
PHRF1-202ENST00000413872 USP35Q9P2H5 1018 aa21.04■□□□□ 0.96
PHRF1-202ENST00000413872 CAMSAP2Q08AD1 1489 aa21.04■□□□□ 0.96
PHRF1-202ENST00000413872 MAP3K1Q13233 1512 aa21.04■□□□□ 0.96
PHRF1-202ENST00000413872 TOM1L2Q6ZVM7 507 aa21.03■□□□□ 0.96
PHRF1-202ENST00000413872 NEUROD6Q96NK8 337 aa21.03■□□□□ 0.96
PHRF1-202ENST00000413872 CCDC61Q9Y6R9 512 aa21.03■□□□□ 0.96
PHRF1-202ENST00000413872 NAIPQ13075 1403 aa21.03■□□□□ 0.96
PHRF1-202ENST00000413872 TWISTNBQ3B726 338 aaPredicted RBP21.03■□□□□ 0.96
PHRF1-202ENST00000413872 SULT6B1Q6IMI4 303 aa21.03■□□□□ 0.96
PHRF1-202ENST00000413872 CLASRPQ8N2M8 674 aaKnown RBP21.03■□□□□ 0.96
PHRF1-202ENST00000413872 DNAJC5BQ9UF47 199 aa21.03■□□□□ 0.96
PHRF1-202ENST00000413872 NINLQ9Y2I6 1382 aa21.02■□□□□ 0.96
PHRF1-202ENST00000413872 PRDM11Q9NQV5 511 aa21.01■□□□□ 0.95
PHRF1-202ENST00000413872 FBXW7Q969H0 707 aa21.01■□□□□ 0.95
PHRF1-202ENST00000413872 PCF11O94913 1555 aaKnown RBP21.01■□□□□ 0.95
PHRF1-202ENST00000413872 ZNF530Q6P9A1 599 aaPredicted RBP21.01■□□□□ 0.95
PHRF1-202ENST00000413872 RBM42Q9BTD8 480 aaKnown RBP21.01■□□□□ 0.95
PHRF1-202ENST00000413872 KCNH5Q8NCM2 988 aa21■□□□□ 0.95
PHRF1-202ENST00000413872 MCTP1Q6DN14 999 aa21■□□□□ 0.95
PHRF1-202ENST00000413872 ERC1Q8IUD2 1116 aa21■□□□□ 0.95
PHRF1-202ENST00000413872 TCEAL9Q9UHQ7 104 aa21■□□□□ 0.95
PHRF1-202ENST00000413872 URB2Q14146 1524 aaKnown RBP21■□□□□ 0.95
PHRF1-202ENST00000413872 CABP4P57796 275 aa21■□□□□ 0.95
PHRF1-202ENST00000413872 LNPKQ9C0E8 428 aa21■□□□□ 0.95
PHRF1-202ENST00000413872 RALYLQ86SE5 291 aaKnown RBP20.99■□□□□ 0.95
PHRF1-202ENST00000413872 CCDC47Q96A33 483 aaKnown RBP20.99■□□□□ 0.95
PHRF1-202ENST00000413872 TPD52L1Q16890 204 aaPredicted RBP20.99■□□□□ 0.95
PHRF1-202ENST00000413872 WDR63Q8IWG1 891 aa20.99■□□□□ 0.95
PHRF1-202ENST00000413872 EXOSC9Q06265 439 aaKnown RBP20.98■□□□□ 0.95
PHRF1-202ENST00000413872 HDGFL1Q5TGJ6 251 aa20.98■□□□□ 0.95
PHRF1-202ENST00000413872 NFXL1Q6ZNB6 911 aa20.98■□□□□ 0.95
PHRF1-202ENST00000413872 DHX16O60231 1041 aaKnown RBP20.98■□□□□ 0.95
PHRF1-202ENST00000413872 PANK1Q8TE04 598 aa20.98■□□□□ 0.95
PHRF1-202ENST00000413872 TBC1D2BQ9UPU7 963 aa20.97■□□□□ 0.95
PHRF1-202ENST00000413872 PDE3AQ14432 1141 aa20.97■□□□□ 0.95
PHRF1-202ENST00000413872 FOXD4L5Q5VV16 416 aaPredicted RBP20.97■□□□□ 0.95
PHRF1-202ENST00000413872 FOXD4L4Q8WXT5 416 aaPredicted RBP20.97■□□□□ 0.95
PHRF1-202ENST00000413872 DENND4BO75064 1496 aaPredicted RBP20.97■□□□□ 0.95
PHRF1-202ENST00000413872 TPM2P07951 284 aa20.97■□□□□ 0.95
PHRF1-202ENST00000413872 NUDT16Q96DE0 195 aaKnown RBP20.97■□□□□ 0.95
PHRF1-202ENST00000413872 RAD21O60216 631 aa20.97■□□□□ 0.95
PHRF1-202ENST00000413872 CDC45O75419 566 aa20.97■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms