RNA–Protein interactions for RNA: ENST00000406019.1

HMGB1P13-201, Transcript of high mobility group box 1 pseudogene 13, humanhuman

BASIC

Gene HMGB1P13, Length 642 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P13-201ENST00000406019 RNF223E7ERA6 249 aa10.54□□□□□ -0.72
HMGB1P13-201ENST00000406019 Q3C1V9 767 aa10.54□□□□□ -0.72
HMGB1P13-201ENST00000406019 PRDM9Q9NQV7 894 aa10.54□□□□□ -0.72
HMGB1P13-201ENST00000406019 RGS20O76081 388 aa10.53□□□□□ -0.72
HMGB1P13-201ENST00000406019 DIXDC1Q155Q3 683 aa10.53□□□□□ -0.72
HMGB1P13-201ENST00000406019 SYMPKQ92797 1274 aaKnown RBP10.53□□□□□ -0.72
HMGB1P13-201ENST00000406019 LIMD1Q9UGP4 676 aa10.53□□□□□ -0.72
HMGB1P13-201ENST00000406019 TUSC1Q2TAM9 212 aa10.52□□□□□ -0.73
HMGB1P13-201ENST00000406019 SLC6A16Q9GZN6 736 aa10.52□□□□□ -0.73
HMGB1P13-201ENST00000406019 PCDHB15Q9Y5E8 787 aa10.52□□□□□ -0.73
HMGB1P13-201ENST00000406019 NEUROD2Q15784 382 aa10.51□□□□□ -0.73
HMGB1P13-201ENST00000406019 DDRGK1Q96HY6 314 aa10.51□□□□□ -0.73
HMGB1P13-201ENST00000406019 USB1Q9BQ65 265 aaKnown RBP10.51□□□□□ -0.73
HMGB1P13-201ENST00000406019 MMP16P51512 607 aa10.5□□□□□ -0.73
HMGB1P13-201ENST00000406019 PLA2G2CQ5R387 149 aa10.5□□□□□ -0.73
HMGB1P13-201ENST00000406019 RIC3Q7Z5B4 369 aa10.5□□□□□ -0.73
HMGB1P13-201ENST00000406019 PPEF1O14829 653 aaPredicted RBP10.49□□□□□ -0.73
HMGB1P13-201ENST00000406019 DXOO77932 396 aaKnown RBP10.49□□□□□ -0.73
HMGB1P13-201ENST00000406019 SH3D19Q5HYK7 790 aa10.49□□□□□ -0.73
HMGB1P13-201ENST00000406019 ANKLE1Q8NAG6 615 aa10.49□□□□□ -0.73
HMGB1P13-201ENST00000406019 RETREG3Q86VR2 466 aa10.48□□□□□ -0.73
HMGB1P13-201ENST00000406019 GGCXP38435 758 aa10.47□□□□□ -0.73
HMGB1P13-201ENST00000406019 FBXO31Q5XUX0 539 aaPredicted RBP10.47□□□□□ -0.73
HMGB1P13-201ENST00000406019 PRPF38BQ5VTL8 546 aaKnown RBP10.46□□□□□ -0.73
HMGB1P13-201ENST00000406019 LILRB3O75022 631 aa10.45□□□□□ -0.74
HMGB1P13-201ENST00000406019 HRCP23327 699 aa10.45□□□□□ -0.74
HMGB1P13-201ENST00000406019 CLK2P49760 499 aaKnown RBP10.45□□□□□ -0.74
HMGB1P13-201ENST00000406019 QPCTQ16769 361 aa10.45□□□□□ -0.74
HMGB1P13-201ENST00000406019 RSPH6AQ9H0K4 717 aa10.45□□□□□ -0.74
HMGB1P13-201ENST00000406019 MTMR2Q13614 643 aa10.44□□□□□ -0.74
HMGB1P13-201ENST00000406019 SKIV2LQ15477 1246 aaKnown RBP10.44□□□□□ -0.74
HMGB1P13-201ENST00000406019 CABLES1Q8TDN4 633 aa10.44□□□□□ -0.74
HMGB1P13-201ENST00000406019 CFAP99D6REC4 459 aa10.43□□□□□ -0.74
HMGB1P13-201ENST00000406019 C6orf229H3BNL8 230 aa10.43□□□□□ -0.74
HMGB1P13-201ENST00000406019 JUNDP17535 347 aa10.43□□□□□ -0.74
HMGB1P13-201ENST00000406019 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.43□□□□□ -0.74
HMGB1P13-201ENST00000406019 LIAT1Q6ZQX7 453 aa10.42□□□□□ -0.74
HMGB1P13-201ENST00000406019 POLR3EQ9NVU0 708 aa10.42□□□□□ -0.74
HMGB1P13-201ENST00000406019 FCF1Q9Y324 198 aaKnown RBP10.42□□□□□ -0.74
HMGB1P13-201ENST00000406019 V9GY48 417 aaPredicted RBP10.42□□□□□ -0.74
HMGB1P13-201ENST00000406019 SPDYE5A6NIY4 337 aa10.41□□□□□ -0.74
HMGB1P13-201ENST00000406019 PROCA1Q8NCQ7 364 aaPredicted RBP10.41□□□□□ -0.74
HMGB1P13-201ENST00000406019 PRR7Q8TB68 274 aa10.41□□□□□ -0.74
HMGB1P13-201ENST00000406019 PRKD2Q9BZL6 878 aa10.41□□□□□ -0.74
HMGB1P13-201ENST00000406019 ZBTB3Q9H5J0 574 aa10.41□□□□□ -0.74
HMGB1P13-201ENST00000406019 GOPCQ9HD26 462 aa10.41□□□□□ -0.74
HMGB1P13-201ENST00000406019 DESI1Q6ICB0 168 aa10.4□□□□□ -0.74
HMGB1P13-201ENST00000406019 CSPP1Q1MSJ5 1256 aa10.39□□□□□ -0.75
HMGB1P13-201ENST00000406019 RTL5Q5HYW3 569 aaPredicted RBP10.39□□□□□ -0.75
HMGB1P13-201ENST00000406019 IL27Q8NEV9 243 aa10.39□□□□□ -0.75
HMGB1P13-201ENST00000406019 PPP2R2DQ66LE6 453 aa10.37□□□□□ -0.75
HMGB1P13-201ENST00000406019 SLC19A1P41440 591 aa10.36□□□□□ -0.75
HMGB1P13-201ENST00000406019 PTPRNQ16849 979 aa10.35□□□□□ -0.75
HMGB1P13-201ENST00000406019 SPRYD7Q5W111 196 aa10.35□□□□□ -0.75
HMGB1P13-201ENST00000406019 RPIAP49247 311 aa10.34□□□□□ -0.75
HMGB1P13-201ENST00000406019 LYPD8Q6UX82 237 aa10.34□□□□□ -0.75
HMGB1P13-201ENST00000406019 PTCRAQ6ISU1 281 aaPredicted RBP10.33□□□□□ -0.76
HMGB1P13-201ENST00000406019 TRIM67Q6ZTA4 783 aa10.33□□□□□ -0.76
HMGB1P13-201ENST00000406019 PER1O15534 1290 aaPredicted RBP10.32□□□□□ -0.76
HMGB1P13-201ENST00000406019 F12P00748 615 aaPredicted RBP10.32□□□□□ -0.76
HMGB1P13-201ENST00000406019 NUDT12Q9BQG2 462 aa10.32□□□□□ -0.76
HMGB1P13-201ENST00000406019 CCNYL3P0C7X3 344 aa10.31□□□□□ -0.76
HMGB1P13-201ENST00000406019 ZNF598Q86UK7 904 aaKnown RBP10.3□□□□□ -0.76
HMGB1P13-201ENST00000406019 EVA1BQ9NVM1 165 aa10.3□□□□□ -0.76
HMGB1P13-201ENST00000406019 NUTM2BA6NNL0 878 aaPredicted RBP10.29□□□□□ -0.76
HMGB1P13-201ENST00000406019 NUTM2EB1AL46 878 aaPredicted RBP10.29□□□□□ -0.76
HMGB1P13-201ENST00000406019 NUTM2DQ5VT03 806 aaPredicted RBP10.29□□□□□ -0.76
HMGB1P13-201ENST00000406019 NUTM2AQ8IVF1 878 aaPredicted RBP10.29□□□□□ -0.76
HMGB1P13-201ENST00000406019 TRIM32Q13049 653 aa10.28□□□□□ -0.76
HMGB1P13-201ENST00000406019 KCNH2Q12809 1159 aa10.27□□□□□ -0.77
HMGB1P13-201ENST00000406019 PCMTD1Q96MG8 357 aaPredicted RBP10.27□□□□□ -0.77
HMGB1P13-201ENST00000406019 PKD2L1Q9P0L9 805 aa10.27□□□□□ -0.77
HMGB1P13-201ENST00000406019 GDF9O60383 454 aa10.26□□□□□ -0.77
HMGB1P13-201ENST00000406019 RFC5P40937 340 aa10.26□□□□□ -0.77
HMGB1P13-201ENST00000406019 SKOR1P84550 965 aa10.26□□□□□ -0.77
HMGB1P13-201ENST00000406019 ZNF697Q5TEC3 545 aa10.26□□□□□ -0.77
HMGB1P13-201ENST00000406019 CTDSPL2Q05D32 466 aa10.25□□□□□ -0.77
HMGB1P13-201ENST00000406019 CCDC24Q8N4L8 307 aa10.25□□□□□ -0.77
HMGB1P13-201ENST00000406019 MAP10Q9P2G4 905 aa10.25□□□□□ -0.77
HMGB1P13-201ENST00000406019 PRR20EP86478 221 aa10.23□□□□□ -0.77
HMGB1P13-201ENST00000406019 PRR20CP86479 221 aa10.23□□□□□ -0.77
HMGB1P13-201ENST00000406019 PRR20DP86480 221 aa10.23□□□□□ -0.77
HMGB1P13-201ENST00000406019 PRR20BP86481 221 aa10.23□□□□□ -0.77
HMGB1P13-201ENST00000406019 PRR20AP86496 221 aa10.23□□□□□ -0.77
HMGB1P13-201ENST00000406019 HELBQ8NG08 1087 aaPredicted RBP10.23□□□□□ -0.77
HMGB1P13-201ENST00000406019 UNC93B1Q9H1C4 597 aa10.23□□□□□ -0.77
HMGB1P13-201ENST00000406019 CD2BP2O95400 341 aaKnown RBP10.21□□□□□ -0.77
HMGB1P13-201ENST00000406019 LRRN4Q8WUT4 740 aa10.21□□□□□ -0.77
HMGB1P13-201ENST00000406019 IRX2Q9BZI1 471 aaPredicted RBP10.21□□□□□ -0.77
HMGB1P13-201ENST00000406019 ZBTB24O43167 697 aaPredicted RBP10.2□□□□□ -0.78
HMGB1P13-201ENST00000406019 WNT7BP56706 349 aa10.2□□□□□ -0.78
HMGB1P13-201ENST00000406019 WNT7AO00755 349 aa10.19□□□□□ -0.78
HMGB1P13-201ENST00000406019 USP17L8P0C7I0 530 aa10.19□□□□□ -0.78
HMGB1P13-201ENST00000406019 SH3BP2P78314 561 aa10.19□□□□□ -0.78
HMGB1P13-201ENST00000406019 TSC1Q92574 1164 aa10.19□□□□□ -0.78
HMGB1P13-201ENST00000406019 HMX1Q9NP08 348 aaPredicted RBP10.19□□□□□ -0.78
HMGB1P13-201ENST00000406019 AP1G2O75843 785 aa10.18□□□□□ -0.78
HMGB1P13-201ENST00000406019 PDZRN3Q9UPQ7 1066 aa10.18□□□□□ -0.78
HMGB1P13-201ENST00000406019 NRG2O14511 850 aaPredicted RBP10.17□□□□□ -0.78
HMGB1P13-201ENST00000406019 LCE2BO14633 110 aa10.17□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms