RNA–Protein interactions for RNA: ENST00000343508.7

CSMD3-203, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best) BASIC

Gene CSMD3, Length 13,018 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-203ENST00000343508 MVPQ14764 893 aaKnown RBP5.83□□□□□ -1.48
CSMD3-203ENST00000343508 RILPL2Q969X0 211 aa5.83□□□□□ -1.48
CSMD3-203ENST00000343508 RIPK4P57078 832 aa5.83□□□□□ -1.48
CSMD3-203ENST00000343508 TROQ12816 1431 aaPredicted RBP5.82□□□□□ -1.48
CSMD3-203ENST00000343508 SLC4A10Q6U841 1118 aa5.82□□□□□ -1.48
CSMD3-203ENST00000343508 API5Q9BZZ5 524 aaKnown RBP5.82□□□□□ -1.48
CSMD3-203ENST00000343508 DHX29Q7Z478 1369 aaKnown RBP5.82□□□□□ -1.48
CSMD3-203ENST00000343508 DIAPH1O60610 1272 aaKnown RBP5.82□□□□□ -1.48
CSMD3-203ENST00000343508 DNMT1P26358 1616 aaKnown RBP5.82□□□□□ -1.48
CSMD3-203ENST00000343508 BECN2A8MW95 431 aa5.82□□□□□ -1.48
CSMD3-203ENST00000343508 ZNF428Q96B54 188 aa5.82□□□□□ -1.48
CSMD3-203ENST00000343508 ZSCAN21Q9Y5A6 473 aaPredicted RBP5.82□□□□□ -1.48
CSMD3-203ENST00000343508 VGFO15240 615 aaPredicted RBP5.82□□□□□ -1.48
CSMD3-203ENST00000343508 C14orf37Q86TY3 774 aa5.82□□□□□ -1.48
CSMD3-203ENST00000343508 ATF7IPQ6VMQ6 1270 aa5.82□□□□□ -1.48
CSMD3-203ENST00000343508 SASS6Q6UVJ0 657 aa5.82□□□□□ -1.48
CSMD3-203ENST00000343508 STK26Q9P289 416 aa5.82□□□□□ -1.48
CSMD3-203ENST00000343508 TRAK1Q9UPV9 953 aa5.82□□□□□ -1.48
CSMD3-203ENST00000343508 GNAI1P63096 354 aa5.81□□□□□ -1.48
CSMD3-203ENST00000343508 RUFY2Q8WXA3 655 aa5.81□□□□□ -1.48
CSMD3-203ENST00000343508 TSPY26PQ9H489 355 aa5.81□□□□□ -1.48
CSMD3-203ENST00000343508 NOL8Q76FK4 1167 aaKnown RBP5.81□□□□□ -1.48
CSMD3-203ENST00000343508 UQCRHLA0A096LP55 91 aa5.81□□□□□ -1.48
CSMD3-203ENST00000343508 H3BQV1 296 aa5.81□□□□□ -1.48
CSMD3-203ENST00000343508 UQCRHP07919 91 aa5.81□□□□□ -1.48
CSMD3-203ENST00000343508 IFFO2Q5TF58 517 aa5.81□□□□□ -1.48
CSMD3-203ENST00000343508 FOXD4L5Q5VV16 416 aaPredicted RBP5.81□□□□□ -1.48
CSMD3-203ENST00000343508 FOXD4L4Q8WXT5 416 aaPredicted RBP5.81□□□□□ -1.48
CSMD3-203ENST00000343508 SETQ01105 290 aaPredicted RBP5.81□□□□□ -1.48
CSMD3-203ENST00000343508 HSP90B1P14625 803 aaKnown RBP5.81□□□□□ -1.48
CSMD3-203ENST00000343508 ABCC5O15440 1437 aa5.81□□□□□ -1.48
CSMD3-203ENST00000343508 WWC1Q8IX03 1113 aa5.81□□□□□ -1.48
CSMD3-203ENST00000343508 TCP11L2Q8N4U5 519 aa5.81□□□□□ -1.48
CSMD3-203ENST00000343508 ARGLU1Q9NWB6 273 aaPredicted RBP5.81□□□□□ -1.48
CSMD3-203ENST00000343508 PRPF40AO75400 957 aaKnown RBP5.81□□□□□ -1.48
CSMD3-203ENST00000343508 PDIA4P13667 645 aaKnown RBP5.81□□□□□ -1.48
CSMD3-203ENST00000343508 ZKSCAN1P17029 563 aaPredicted RBP5.8□□□□□ -1.48
CSMD3-203ENST00000343508 CHD1LQ86WJ1 897 aa5.8□□□□□ -1.48
CSMD3-203ENST00000343508 NOM1Q5C9Z4 860 aaKnown RBP5.8□□□□□ -1.48
CSMD3-203ENST00000343508 SENP3Q9H4L4 574 aaPredicted RBP5.8□□□□□ -1.48
CSMD3-203ENST00000343508 NAT10Q9H0A0 1025 aaKnown RBP5.8□□□□□ -1.48
CSMD3-203ENST00000343508 GGT6Q6P531 493 aa5.8□□□□□ -1.48
CSMD3-203ENST00000343508 RAPGEF6Q8TEU7 1601 aa5.8□□□□□ -1.48
CSMD3-203ENST00000343508 FAM184AQ8NB25 1140 aa5.8□□□□□ -1.48
CSMD3-203ENST00000343508 TCOF1Q13428 1488 aaKnown RBP5.8□□□□□ -1.48
CSMD3-203ENST00000343508 IFT57Q9NWB7 429 aa5.8□□□□□ -1.48
CSMD3-203ENST00000343508 MTHFSP49914 203 aa5.8□□□□□ -1.48
CSMD3-203ENST00000343508 DHX8Q14562 1220 aaKnown RBP5.8□□□□□ -1.48
CSMD3-203ENST00000343508 DUSP27Q5VZP5 1158 aa5.8□□□□□ -1.48
CSMD3-203ENST00000343508 ARHGEF12Q9NZN5 1544 aa5.8□□□□□ -1.48
CSMD3-203ENST00000343508 MCM5P33992 734 aa5.8□□□□□ -1.48
CSMD3-203ENST00000343508 SMC3Q9UQE7 1217 aa5.8□□□□□ -1.48
CSMD3-203ENST00000343508 RBM10P98175 930 aaKnown RBP5.8□□□□□ -1.48
CSMD3-203ENST00000343508 RNF20Q5VTR2 975 aa5.79□□□□□ -1.48
CSMD3-203ENST00000343508 ZNF592Q92610 1267 aa5.79□□□□□ -1.48
CSMD3-203ENST00000343508 FAM135AQ9P2D6 1515 aa5.79□□□□□ -1.48
CSMD3-203ENST00000343508 FOXD4L6Q3SYB3 417 aaPredicted RBP5.79□□□□□ -1.48
CSMD3-203ENST00000343508 FOXD4L3Q6VB84 417 aaPredicted RBP5.79□□□□□ -1.48
CSMD3-203ENST00000343508 ASXL1Q8IXJ9 1541 aa5.79□□□□□ -1.48
CSMD3-203ENST00000343508 ZMYM4Q5VZL5 1548 aa5.79□□□□□ -1.48
CSMD3-203ENST00000343508 C20orf194Q5TEA3 1177 aa5.79□□□□□ -1.48
CSMD3-203ENST00000343508 TBC1D32Q96NH3 1257 aa5.79□□□□□ -1.48
CSMD3-203ENST00000343508 CWC15Q9P013 229 aaKnown RBP5.79□□□□□ -1.48
CSMD3-203ENST00000343508 TBC1D2Q9BYX2 928 aa5.79□□□□□ -1.48
CSMD3-203ENST00000343508 ABCA5Q8WWZ7 1642 aa5.78□□□□□ -1.48
CSMD3-203ENST00000343508 DYNC1I1O14576 645 aa5.78□□□□□ -1.48
CSMD3-203ENST00000343508 NOB1Q9ULX3 412 aaKnown RBP5.78□□□□□ -1.48
CSMD3-203ENST00000343508 RNF123Q5XPI4 1314 aa5.78□□□□□ -1.48
CSMD3-203ENST00000343508 PDCL2Q8N4E4 241 aa5.78□□□□□ -1.48
CSMD3-203ENST00000343508 PTPRGP23470 1445 aa5.78□□□□□ -1.48
CSMD3-203ENST00000343508 PLEKHH1Q9ULM0 1364 aa5.78□□□□□ -1.48
CSMD3-203ENST00000343508 PSMA5P28066 241 aa5.78□□□□□ -1.48
CSMD3-203ENST00000343508 SF3A1Q15459 793 aaKnown RBP5.78□□□□□ -1.48
CSMD3-203ENST00000343508 ANO2Q9NQ90 1003 aa5.78□□□□□ -1.48
CSMD3-203ENST00000343508 PARD3Q8TEW0 1356 aa5.78□□□□□ -1.48
CSMD3-203ENST00000343508 ELL2O00472 640 aaPredicted RBP5.78□□□□□ -1.48
CSMD3-203ENST00000343508 SUGP2Q8IX01 1082 aaKnown RBP eCLIP5.78□□□□□ -1.48
CSMD3-203ENST00000343508 C8orf34Q49A92 452 aa5.78□□□□□ -1.48
CSMD3-203ENST00000343508 CCDC192P0DO97 292 aa5.77□□□□□ -1.49
CSMD3-203ENST00000343508 HOMER1Q86YM7 354 aa5.77□□□□□ -1.49
CSMD3-203ENST00000343508 WDR33Q9C0J8 1336 aaKnown RBP5.77□□□□□ -1.49
CSMD3-203ENST00000343508 INSRP06213 1382 aa5.77□□□□□ -1.49
CSMD3-203ENST00000343508 GPRASP1Q5JY77 1395 aa5.77□□□□□ -1.49
CSMD3-203ENST00000343508 TPD52L1Q16890 204 aaPredicted RBP5.77□□□□□ -1.49
CSMD3-203ENST00000343508 PDCP20941 246 aa5.77□□□□□ -1.49
CSMD3-203ENST00000343508 NBPF1Q3BBV0 1214 aa5.77□□□□□ -1.49
CSMD3-203ENST00000343508 PODXL2Q9NZ53 605 aa5.77□□□□□ -1.49
CSMD3-203ENST00000343508 CCDC70Q6NSX1 233 aa5.77□□□□□ -1.49
CSMD3-203ENST00000343508 ZMYND15Q9H091 742 aa5.77□□□□□ -1.49
CSMD3-203ENST00000343508 HOOK1Q9UJC3 728 aaKnown RBP5.77□□□□□ -1.49
CSMD3-203ENST00000343508 KLHL40Q2TBA0 621 aa5.77□□□□□ -1.49
CSMD3-203ENST00000343508 ERC2O15083 957 aa5.77□□□□□ -1.49
CSMD3-203ENST00000343508 RNF214Q8ND24 703 aa5.77□□□□□ -1.49
CSMD3-203ENST00000343508 SNAPC4Q5SXM2 1469 aa5.77□□□□□ -1.49
CSMD3-203ENST00000343508 RARSP54136 660 aaKnown RBP5.77□□□□□ -1.49
CSMD3-203ENST00000343508 HSP90AB4PQ58FF6 505 aa5.77□□□□□ -1.49
CSMD3-203ENST00000343508 BICD2Q8TD16 824 aa5.77□□□□□ -1.49
CSMD3-203ENST00000343508 COG3Q96JB2 828 aa5.77□□□□□ -1.49
CSMD3-203ENST00000343508 NEK4P51957 841 aa5.77□□□□□ -1.49
CSMD3-203ENST00000343508 HS1BP3Q53T59 392 aa5.77□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms