RNA–Protein interactions for RNA: ENST00000341060.3

TDP2-201, Transcript of tyrosyl-DNA phosphodiesterase 2, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TDP2, Length 2,120 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP2-201ENST00000341060 NSD3Q9BZ95 1437 aa19.08■□□□□ 0.64
TDP2-201ENST00000341060 NEXMIFQ5QGS0 1516 aa19.08■□□□□ 0.64
TDP2-201ENST00000341060 APAF1O14727 1248 aa19.07■□□□□ 0.64
TDP2-201ENST00000341060 GOLGA6L2Q8N9W4 650 aaPredicted RBP19.07■□□□□ 0.64
TDP2-201ENST00000341060 TRAK1Q9UPV9 953 aa19.07■□□□□ 0.64
TDP2-201ENST00000341060 KDM2BQ8NHM5 1336 aa19.06■□□□□ 0.64
TDP2-201ENST00000341060 ZBTB47Q9UFB7 747 aaPredicted RBP19.04■□□□□ 0.64
TDP2-201ENST00000341060 MYO5BQ9ULV0 1848 aa19.04■□□□□ 0.64
TDP2-201ENST00000341060 E9PSI1 815 aa19.03■□□□□ 0.64
TDP2-201ENST00000341060 SPINK5Q9NQ38 1064 aaPredicted RBP19.03■□□□□ 0.64
TDP2-201ENST00000341060 ARHGAP31Q2M1Z3 1444 aa19.03■□□□□ 0.64
TDP2-201ENST00000341060 TULP4Q9NRJ4 1543 aa19.02■□□□□ 0.64
TDP2-201ENST00000341060 CENPQQ7L2Z9 268 aaPredicted RBP19.02■□□□□ 0.64
TDP2-201ENST00000341060 TMEM132EQ6IEE7 984 aa19.01■□□□□ 0.63
TDP2-201ENST00000341060 SLC12A5Q9H2X9 1139 aa19■□□□□ 0.63
TDP2-201ENST00000341060 PUS7Q96PZ0 661 aaKnown RBP19■□□□□ 0.63
TDP2-201ENST00000341060 IQSEC2Q5JU85 1478 aa18.99■□□□□ 0.63
TDP2-201ENST00000341060 PREX1Q8TCU6 1659 aa18.99■□□□□ 0.63
TDP2-201ENST00000341060 MORC1Q86VD1 984 aa18.99■□□□□ 0.63
TDP2-201ENST00000341060 VGFO15240 615 aaPredicted RBP18.98■□□□□ 0.63
TDP2-201ENST00000341060 NPM2Q86SE8 214 aaKnown RBP18.97■□□□□ 0.63
TDP2-201ENST00000341060 ZFYVE9O95405 1425 aa18.97■□□□□ 0.63
TDP2-201ENST00000341060 CGNL1Q0VF96 1302 aa18.97■□□□□ 0.63
TDP2-201ENST00000341060 DMRT2Q9Y5R5 561 aa18.97■□□□□ 0.63
TDP2-201ENST00000341060 ANKRD36BQ8N2N9 1353 aa18.96■□□□□ 0.63
TDP2-201ENST00000341060 EVC2Q86UK5 1308 aa18.96■□□□□ 0.63
TDP2-201ENST00000341060 SKAP1Q86WV1 359 aa18.96■□□□□ 0.63
TDP2-201ENST00000341060 WWC1Q8IX03 1113 aa18.96■□□□□ 0.63
TDP2-201ENST00000341060 NSD2O96028 1365 aa18.96■□□□□ 0.62
TDP2-201ENST00000341060 TMEM131LA2VDJ0 1609 aa18.95■□□□□ 0.62
TDP2-201ENST00000341060 VIRMAQ69YN4 1812 aaKnown RBP18.95■□□□□ 0.62
TDP2-201ENST00000341060 NINLQ9Y2I6 1382 aa18.94■□□□□ 0.62
TDP2-201ENST00000341060 BCAR3O75815 825 aa18.94■□□□□ 0.62
TDP2-201ENST00000341060 ANKRD26Q9UPS8 1709 aa18.93■□□□□ 0.62
TDP2-201ENST00000341060 NBR1Q14596 966 aa18.93■□□□□ 0.62
TDP2-201ENST00000341060 RUNDC1Q96C34 613 aa18.93■□□□□ 0.62
TDP2-201ENST00000341060 MLECQ14165 292 aa18.92■□□□□ 0.62
TDP2-201ENST00000341060 CLTCQ00610 1675 aaKnown RBP18.92■□□□□ 0.62
TDP2-201ENST00000341060 TNNT2P45379 298 aaPredicted RBP18.92■□□□□ 0.62
TDP2-201ENST00000341060 ARHGEF40Q8TER5 1519 aa18.91■□□□□ 0.62
TDP2-201ENST00000341060 IDI1Q13907 227 aa18.91■□□□□ 0.62
TDP2-201ENST00000341060 NUTM2DQ5VT03 806 aaPredicted RBP18.91■□□□□ 0.62
TDP2-201ENST00000341060 PHF23Q9BUL5 403 aaPredicted RBP18.91■□□□□ 0.62
TDP2-201ENST00000341060 SLC52A1Q9NWF4 448 aa18.91■□□□□ 0.62
TDP2-201ENST00000341060 ADGRB2O60241 1585 aa18.9■□□□□ 0.62
TDP2-201ENST00000341060 PDE3AQ14432 1141 aa18.9■□□□□ 0.62
TDP2-201ENST00000341060 MTHFSP49914 203 aa18.89■□□□□ 0.62
TDP2-201ENST00000341060 CFAP53Q96M91 514 aa18.89■□□□□ 0.61
TDP2-201ENST00000341060 TCP11L2Q8N4U5 519 aa18.88■□□□□ 0.61
TDP2-201ENST00000341060 PTPRMP28827 1452 aa18.88■□□□□ 0.61
TDP2-201ENST00000341060 ABCC11Q96J66 1382 aa18.87■□□□□ 0.61
TDP2-201ENST00000341060 REREQ9P2R6 1566 aa18.87■□□□□ 0.61
TDP2-201ENST00000341060 CCDC27Q2M243 656 aa18.86■□□□□ 0.61
TDP2-201ENST00000341060 NCBP3Q53F19 620 aaKnown RBP18.86■□□□□ 0.61
TDP2-201ENST00000341060 WDR63Q8IWG1 891 aa18.86■□□□□ 0.61
TDP2-201ENST00000341060 FAM161AQ3B820 660 aa18.85■□□□□ 0.61
TDP2-201ENST00000341060 DDRGK1Q96HY6 314 aa18.85■□□□□ 0.61
TDP2-201ENST00000341060 CABP2Q9NPB3 220 aa18.85■□□□□ 0.61
TDP2-201ENST00000341060 A0A1W2PP64 1363 aa18.85■□□□□ 0.61
TDP2-201ENST00000341060 AGLP35573 1532 aa18.85■□□□□ 0.61
TDP2-201ENST00000341060 DEKP35659 375 aaKnown RBP18.85■□□□□ 0.61
TDP2-201ENST00000341060 NEUROD2Q15784 382 aa18.84■□□□□ 0.61
TDP2-201ENST00000341060 C8orf34Q49A92 452 aa18.84■□□□□ 0.61
TDP2-201ENST00000341060 RRP7AQ9Y3A4 280 aaKnown RBP18.84■□□□□ 0.61
TDP2-201ENST00000341060 KIF20BQ96Q89 1820 aa18.83■□□□□ 0.6
TDP2-201ENST00000341060 RTL5Q5HYW3 569 aaPredicted RBP18.82■□□□□ 0.6
TDP2-201ENST00000341060 BCL11AQ9H165 835 aa18.82■□□□□ 0.6
TDP2-201ENST00000341060 MED14O60244 1454 aa18.82■□□□□ 0.6
TDP2-201ENST00000341060 ATAD2Q6PL18 1390 aa18.82■□□□□ 0.6
TDP2-201ENST00000341060 CANXP27824 592 aaKnown RBP18.82■□□□□ 0.6
TDP2-201ENST00000341060 YTHDC2Q9H6S0 1430 aaKnown RBP18.81■□□□□ 0.6
TDP2-201ENST00000341060 RARSP54136 660 aaKnown RBP18.81■□□□□ 0.6
TDP2-201ENST00000341060 CLUAP1Q96AJ1 413 aa18.81■□□□□ 0.6
TDP2-201ENST00000341060 ALKQ9UM73 1620 aa18.81■□□□□ 0.6
TDP2-201ENST00000341060 COL3A1P02461 1466 aaPredicted RBP18.81■□□□□ 0.6
TDP2-201ENST00000341060 SAFB2Q14151 953 aaKnown RBP eCLIP18.8■□□□□ 0.6
TDP2-201ENST00000341060 CD163L1Q9NR16 1453 aa18.8■□□□□ 0.6
TDP2-201ENST00000341060 RGS3P49796 1198 aa18.79■□□□□ 0.6
TDP2-201ENST00000341060 IGHDP01880 384 aa18.79■□□□□ 0.6
TDP2-201ENST00000341060 SRPK2P78362 688 aaKnown RBP18.79■□□□□ 0.6
TDP2-201ENST00000341060 AAMPQ13685 434 aa18.79■□□□□ 0.6
TDP2-201ENST00000341060 PANK1Q8TE04 598 aa18.79■□□□□ 0.6
TDP2-201ENST00000341060 COG6Q9Y2V7 657 aa18.79■□□□□ 0.6
TDP2-201ENST00000341060 NLRP1Q9C000 1473 aa18.79■□□□□ 0.6
TDP2-201ENST00000341060 STK26Q9P289 416 aa18.78■□□□□ 0.6
TDP2-201ENST00000341060 U2AF1L5P0DN76 240 aaPredicted RBP18.77■□□□□ 0.6
TDP2-201ENST00000341060 U2AF1Q01081 240 aaKnown RBP eCLIP18.77■□□□□ 0.6
TDP2-201ENST00000341060 FBXO31Q5XUX0 539 aaPredicted RBP18.77■□□□□ 0.6
TDP2-201ENST00000341060 MYH16Q9H6N6 1097 aa18.77■□□□□ 0.6
TDP2-201ENST00000341060 SETD1AO15047 1707 aaKnown RBP18.76■□□□□ 0.59
TDP2-201ENST00000341060 FRAT1Q92837 279 aaPredicted RBP18.76■□□□□ 0.59
TDP2-201ENST00000341060 ESF1Q9H501 851 aaKnown RBP18.76■□□□□ 0.59
TDP2-201ENST00000341060 PPP6R1Q9UPN7 881 aa18.76■□□□□ 0.59
TDP2-201ENST00000341060 PRAM1Q96QH2 718 aa18.75■□□□□ 0.59
TDP2-201ENST00000341060 TERF2IPQ9NYB0 399 aa18.75■□□□□ 0.59
TDP2-201ENST00000341060 USP35Q9P2H5 1018 aa18.75■□□□□ 0.59
TDP2-201ENST00000341060 PPM1GO15355 546 aaPredicted RBP18.74■□□□□ 0.59
TDP2-201ENST00000341060 LAS1LQ9Y4W2 734 aaKnown RBP18.74■□□□□ 0.59
TDP2-201ENST00000341060 MINK1Q8N4C8 1332 aaPredicted RBP18.74■□□□□ 0.59
TDP2-201ENST00000341060 MAPK8IP3Q9UPT6 1336 aa18.74■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 8.2 ms