RNA–Protein interactions for RNA: ENST00000334504.11

COL4A6-201, Transcript of collagen type IV alpha 6 chain, humanhuman

APPRIS P1 TSL 5 BASIC

Gene COL4A6, Length 6,700 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-201ENST00000334504 USP8P40818 1118 aa11.79□□□□□ -0.52
COL4A6-201ENST00000334504 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.79□□□□□ -0.52
COL4A6-201ENST00000334504 FMN1Q68DA7 1419 aa11.79□□□□□ -0.52
COL4A6-201ENST00000334504 CDC45O75419 566 aa11.78□□□□□ -0.52
COL4A6-201ENST00000334504 ZRSR2Q15696 482 aaKnown RBP11.78□□□□□ -0.52
COL4A6-201ENST00000334504 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.78□□□□□ -0.52
COL4A6-201ENST00000334504 CENPHQ9H3R5 247 aa11.78□□□□□ -0.52
COL4A6-201ENST00000334504 ODF2Q5BJF6 829 aa11.77□□□□□ -0.52
COL4A6-201ENST00000334504 LRRFIP1Q32MZ4 808 aaKnown RBP11.77□□□□□ -0.52
COL4A6-201ENST00000334504 CBX1P83916 185 aa11.77□□□□□ -0.53
COL4A6-201ENST00000334504 GIMAP7Q8NHV1 300 aa11.77□□□□□ -0.53
COL4A6-201ENST00000334504 SYTL4Q96C24 671 aaPredicted RBP11.77□□□□□ -0.53
COL4A6-201ENST00000334504 FMNL2Q96PY5 1086 aa11.77□□□□□ -0.53
COL4A6-201ENST00000334504 ESPNB1AK53 854 aa11.77□□□□□ -0.53
COL4A6-201ENST00000334504 OFD1O75665 1012 aa11.77□□□□□ -0.53
COL4A6-201ENST00000334504 SMARCE1Q969G3 411 aa11.77□□□□□ -0.53
COL4A6-201ENST00000334504 TCEAL9Q9UHQ7 104 aa11.77□□□□□ -0.53
COL4A6-201ENST00000334504 SOGA1O94964 1423 aa11.77□□□□□ -0.53
COL4A6-201ENST00000334504 GOLGA6L7A0A1B0GV03 622 aa11.76□□□□□ -0.53
COL4A6-201ENST00000334504 PDCL2Q8N4E4 241 aa11.76□□□□□ -0.53
COL4A6-201ENST00000334504 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.76□□□□□ -0.53
COL4A6-201ENST00000334504 EIF3JO75822 258 aaKnown RBP11.76□□□□□ -0.53
COL4A6-201ENST00000334504 AMPHP49418 695 aa11.76□□□□□ -0.53
COL4A6-201ENST00000334504 TRDNQ13061 729 aa11.76□□□□□ -0.53
COL4A6-201ENST00000334504 ST20-MTHFSA0A0A6YYL1 179 aa11.76□□□□□ -0.53
COL4A6-201ENST00000334504 GOLGA6L10A6NI86 522 aa11.76□□□□□ -0.53
COL4A6-201ENST00000334504 SAFBQ15424 915 aaKnown RBP eCLIP11.76□□□□□ -0.53
COL4A6-201ENST00000334504 EPS15P42566 896 aa11.76□□□□□ -0.53
COL4A6-201ENST00000334504 FAM193AP78312 1265 aa11.76□□□□□ -0.53
COL4A6-201ENST00000334504 PANK1Q8TE04 598 aa11.75□□□□□ -0.53
COL4A6-201ENST00000334504 ZFYVE27Q5T4F4 411 aa11.75□□□□□ -0.53
COL4A6-201ENST00000334504 ERLIN1O75477 346 aa11.75□□□□□ -0.53
COL4A6-201ENST00000334504 BRPF1P55201 1214 aaPredicted RBP11.75□□□□□ -0.53
COL4A6-201ENST00000334504 DYDC1Q8WWB3 177 aa11.74□□□□□ -0.53
COL4A6-201ENST00000334504 KINO60870 393 aaKnown RBP11.74□□□□□ -0.53
COL4A6-201ENST00000334504 API5Q9BZZ5 524 aaKnown RBP11.74□□□□□ -0.53
COL4A6-201ENST00000334504 C9orf78Q9NZ63 289 aaPredicted RBP11.74□□□□□ -0.53
COL4A6-201ENST00000334504 DHX16O60231 1041 aaKnown RBP11.74□□□□□ -0.53
COL4A6-201ENST00000334504 KDM4AO75164 1064 aa11.74□□□□□ -0.53
COL4A6-201ENST00000334504 ZMYND15Q9H091 742 aa11.74□□□□□ -0.53
COL4A6-201ENST00000334504 ROCK1Q13464 1354 aa11.74□□□□□ -0.53
COL4A6-201ENST00000334504 DHX57Q6P158 1386 aaKnown RBP11.74□□□□□ -0.53
COL4A6-201ENST00000334504 ERICH2A1L162 156 aa11.73□□□□□ -0.53
COL4A6-201ENST00000334504 FIBPO43427 364 aa11.73□□□□□ -0.53
COL4A6-201ENST00000334504 FILIP1LQ4L180 1135 aa11.73□□□□□ -0.53
COL4A6-201ENST00000334504 FAM177A1Q8N128 213 aaPredicted RBP11.73□□□□□ -0.53
COL4A6-201ENST00000334504 CTDP1Q9Y5B0 961 aaPredicted RBP11.73□□□□□ -0.53
COL4A6-201ENST00000334504 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.73□□□□□ -0.53
COL4A6-201ENST00000334504 NECTIN2Q92692 538 aa11.73□□□□□ -0.53
COL4A6-201ENST00000334504 INCENPQ9NQS7 918 aa11.73□□□□□ -0.53
COL4A6-201ENST00000334504 NGEFQ8N5V2 710 aa11.72□□□□□ -0.53
COL4A6-201ENST00000334504 CCDC102AQ96A19 550 aa11.72□□□□□ -0.53
COL4A6-201ENST00000334504 NEFHP12036 1026 aa11.72□□□□□ -0.53
COL4A6-201ENST00000334504 EIF2S2P20042 333 aaKnown RBP11.72□□□□□ -0.53
COL4A6-201ENST00000334504 IBSPP21815 317 aaPredicted RBP11.72□□□□□ -0.53
COL4A6-201ENST00000334504 ENOX2Q16206 610 aaKnown RBP11.72□□□□□ -0.53
COL4A6-201ENST00000334504 AMOTL1Q8IY63 956 aa11.72□□□□□ -0.53
COL4A6-201ENST00000334504 ERLIN2O94905 339 aa11.72□□□□□ -0.53
COL4A6-201ENST00000334504 NEXNQ0ZGT2 675 aa11.72□□□□□ -0.53
COL4A6-201ENST00000334504 GPATCH11Q8N954 259 aa11.72□□□□□ -0.53
COL4A6-201ENST00000334504 ANKRD30AQ9BXX3 1397 aa11.72□□□□□ -0.53
COL4A6-201ENST00000334504 SERPINC1P01008 464 aa11.71□□□□□ -0.53
COL4A6-201ENST00000334504 CCDC192P0DO97 292 aa11.71□□□□□ -0.53
COL4A6-201ENST00000334504 CGNQ9P2M7 1197 aaKnown RBP11.71□□□□□ -0.53
COL4A6-201ENST00000334504 G3BP1Q13283 466 aaKnown RBP eCLIP11.71□□□□□ -0.54
COL4A6-201ENST00000334504 TRERF1Q96PN7 1200 aa11.71□□□□□ -0.54
COL4A6-201ENST00000334504 TRIM34Q9BYJ4 488 aa11.71□□□□□ -0.54
COL4A6-201ENST00000334504 ERC2O15083 957 aa11.7□□□□□ -0.54
COL4A6-201ENST00000334504 CEBPZQ03701 1054 aaKnown RBP11.7□□□□□ -0.54
COL4A6-201ENST00000334504 ZHX1Q9UKY1 873 aaPredicted RBP11.7□□□□□ -0.54
COL4A6-201ENST00000334504 NEK4P51957 841 aa11.7□□□□□ -0.54
COL4A6-201ENST00000334504 CCDC181Q5TID7 509 aa11.7□□□□□ -0.54
COL4A6-201ENST00000334504 MAGEC2Q9UBF1 373 aaPredicted RBP11.7□□□□□ -0.54
COL4A6-201ENST00000334504 KIF7Q2M1P5 1343 aa11.7□□□□□ -0.54
COL4A6-201ENST00000334504 PSMA5P28066 241 aa11.7□□□□□ -0.54
COL4A6-201ENST00000334504 STK11IPQ8N1F8 1099 aa11.7□□□□□ -0.54
COL4A6-201ENST00000334504 LRRCC1Q9C099 1032 aa11.7□□□□□ -0.54
COL4A6-201ENST00000334504 ANKRD62A6NC57 917 aa11.7□□□□□ -0.54
COL4A6-201ENST00000334504 CARMIL1Q5VZK9 1371 aa11.7□□□□□ -0.54
COL4A6-201ENST00000334504 RIPK4P57078 832 aa11.7□□□□□ -0.54
COL4A6-201ENST00000334504 TAX1BP1Q86VP1 789 aa11.7□□□□□ -0.54
COL4A6-201ENST00000334504 NGDNQ8NEJ9 315 aaKnown RBP11.7□□□□□ -0.54
COL4A6-201ENST00000334504 TNMDQ9H2S6 317 aa11.69□□□□□ -0.54
COL4A6-201ENST00000334504 TRAK1Q9UPV9 953 aa11.69□□□□□ -0.54
COL4A6-201ENST00000334504 RABEP1Q15276 862 aa11.69□□□□□ -0.54
COL4A6-201ENST00000334504 TICAM2Q86XR7 235 aa11.69□□□□□ -0.54
COL4A6-201ENST00000334504 ZSCAN30Q86W11 494 aa11.69□□□□□ -0.54
COL4A6-201ENST00000334504 NOL10Q9BSC4 688 aaKnown RBP11.69□□□□□ -0.54
COL4A6-201ENST00000334504 PDZRN3Q9UPQ7 1066 aa11.69□□□□□ -0.54
COL4A6-201ENST00000334504 PDCL3Q9H2J4 239 aa11.69□□□□□ -0.54
COL4A6-201ENST00000334504 NINLQ9Y2I6 1382 aa11.69□□□□□ -0.54
COL4A6-201ENST00000334504 RALYLQ86SE5 291 aaKnown RBP11.68□□□□□ -0.54
COL4A6-201ENST00000334504 CCDC43Q96MW1 224 aaKnown RBP11.68□□□□□ -0.54
COL4A6-201ENST00000334504 SEPT7Q16181 437 aaKnown RBP11.68□□□□□ -0.54
COL4A6-201ENST00000334504 BRMS1Q9HCU9 246 aa11.68□□□□□ -0.54
COL4A6-201ENST00000334504 USP47Q96K76 1375 aa11.68□□□□□ -0.54
COL4A6-201ENST00000334504 PPFIBP1Q86W92 1011 aa11.68□□□□□ -0.54
COL4A6-201ENST00000334504 DHX8Q14562 1220 aaKnown RBP11.68□□□□□ -0.54
COL4A6-201ENST00000334504 AAMPQ13685 434 aa11.68□□□□□ -0.54
COL4A6-201ENST00000334504 ZNF396Q96N95 335 aaPredicted RBP11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms