RNA–Protein interactions for RNA: ENST00000316048.2

SMCO3-201, Transcript of single-pass membrane protein with coiled-coil domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMCO3, Length 2,104 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCO3-201ENST00000316048 VPS9D1Q9Y2B5 631 aa7.3□□□□□ -1.24
SMCO3-201ENST00000316048 RETREG2Q8NC44 543 aa7.3□□□□□ -1.24
SMCO3-201ENST00000316048 NDUFB9Q9Y6M9 179 aa7.3□□□□□ -1.24
SMCO3-201ENST00000316048 C6orf229H3BNL8 230 aa7.29□□□□□ -1.24
SMCO3-201ENST00000316048 RSPH4AQ5TD94 716 aa7.28□□□□□ -1.24
SMCO3-201ENST00000316048 VAC14Q08AM6 782 aa7.28□□□□□ -1.24
SMCO3-201ENST00000316048 PER1O15534 1290 aaPredicted RBP7.27□□□□□ -1.25
SMCO3-201ENST00000316048 ST18O60284 1047 aa7.27□□□□□ -1.25
SMCO3-201ENST00000316048 PUS10Q3MIT2 529 aaKnown RBP7.27□□□□□ -1.25
SMCO3-201ENST00000316048 SLC4A5Q9BY07 1137 aa7.27□□□□□ -1.25
SMCO3-201ENST00000316048 HELBQ8NG08 1087 aaPredicted RBP7.27□□□□□ -1.25
SMCO3-201ENST00000316048 EMP3P54852 163 aa7.26□□□□□ -1.25
SMCO3-201ENST00000316048 HDGFL1Q5TGJ6 251 aa7.26□□□□□ -1.25
SMCO3-201ENST00000316048 SLF2Q8IX21 1173 aa7.26□□□□□ -1.25
SMCO3-201ENST00000316048 PRM3Q9NNZ6 103 aa7.26□□□□□ -1.25
SMCO3-201ENST00000316048 POTEB3A0JP26 581 aa7.25□□□□□ -1.25
SMCO3-201ENST00000316048 FAM205CA6NFA0 338 aa7.25□□□□□ -1.25
SMCO3-201ENST00000316048 POTEBQ6S5H4 581 aa7.25□□□□□ -1.25
SMCO3-201ENST00000316048 WWC1Q8IX03 1113 aa7.25□□□□□ -1.25
SMCO3-201ENST00000316048 BHMG1C9JSJ3 638 aaPredicted RBP7.25□□□□□ -1.25
SMCO3-201ENST00000316048 HDGFP51858 240 aaKnown RBP7.25□□□□□ -1.25
SMCO3-201ENST00000316048 NR6A1Q15406 480 aa7.25□□□□□ -1.25
SMCO3-201ENST00000316048 PRR7Q8TB68 274 aa7.25□□□□□ -1.25
SMCO3-201ENST00000316048 ZFRQ96KR1 1074 aaKnown RBP7.25□□□□□ -1.25
SMCO3-201ENST00000316048 ATP6V1AP38606 617 aa7.24□□□□□ -1.25
SMCO3-201ENST00000316048 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP7.23□□□□□ -1.25
SMCO3-201ENST00000316048 RFX1P22670 979 aa7.23□□□□□ -1.25
SMCO3-201ENST00000316048 SLC27A5Q9Y2P5 690 aa7.23□□□□□ -1.25
SMCO3-201ENST00000316048 MORN1Q5T089 497 aa7.22□□□□□ -1.25
SMCO3-201ENST00000316048 TRAIPQ9BWF2 469 aa7.22□□□□□ -1.25
SMCO3-201ENST00000316048 GRIPAP1Q4V328 841 aa7.22□□□□□ -1.25
SMCO3-201ENST00000316048 CFAP70Q5T0N1 1121 aa7.22□□□□□ -1.25
SMCO3-201ENST00000316048 RNF19BQ6ZMZ0 732 aa7.22□□□□□ -1.25
SMCO3-201ENST00000316048 ZNF687Q8N1G0 1237 aa7.22□□□□□ -1.25
SMCO3-201ENST00000316048 NBPF3Q9H094 633 aa7.22□□□□□ -1.25
SMCO3-201ENST00000316048 ZBTB7CA1YPR0 619 aa7.21□□□□□ -1.25
SMCO3-201ENST00000316048 PBX2P40425 430 aa7.21□□□□□ -1.25
SMCO3-201ENST00000316048 SLC4A3P48751 1232 aa7.21□□□□□ -1.25
SMCO3-201ENST00000316048 LAPTM4BQ86VI4 370 aa7.21□□□□□ -1.25
SMCO3-201ENST00000316048 AEBP1Q8IUX7 1158 aa7.21□□□□□ -1.25
SMCO3-201ENST00000316048 UCN2Q96RP3 112 aa7.21□□□□□ -1.25
SMCO3-201ENST00000316048 CARNS1A5YM72 827 aa7.21□□□□□ -1.26
SMCO3-201ENST00000316048 BLOC1S3Q6QNY0 202 aa7.21□□□□□ -1.26
SMCO3-201ENST00000316048 HS3ST6Q96QI5 342 aa7.2□□□□□ -1.26
SMCO3-201ENST00000316048 WASHC4Q2M389 1173 aa7.19□□□□□ -1.26
SMCO3-201ENST00000316048 MRPL50Q8N5N7 158 aaKnown RBP7.19□□□□□ -1.26
SMCO3-201ENST00000316048 ALG2Q9H553 416 aa7.19□□□□□ -1.26
SMCO3-201ENST00000316048 KMT5BQ4FZB7 885 aa7.19□□□□□ -1.26
SMCO3-201ENST00000316048 RETREG3Q86VR2 466 aa7.19□□□□□ -1.26
SMCO3-201ENST00000316048 LRCH3Q96II8 777 aa7.19□□□□□ -1.26
SMCO3-201ENST00000316048 ACTN4O43707 911 aaKnown RBP7.18□□□□□ -1.26
SMCO3-201ENST00000316048 ADGRD1Q6QNK2 874 aa7.18□□□□□ -1.26
SMCO3-201ENST00000316048 PPP1R12CQ9BZL4 782 aa7.18□□□□□ -1.26
SMCO3-201ENST00000316048 LHX8Q68G74 356 aa7.18□□□□□ -1.26
SMCO3-201ENST00000316048 CDKN2AIPQ9NXV6 580 aaPredicted RBP7.18□□□□□ -1.26
SMCO3-201ENST00000316048 PALM3A6NDB9 673 aaPredicted RBP7.17□□□□□ -1.26
SMCO3-201ENST00000316048 PPP1R15AO75807 674 aaPredicted RBP7.17□□□□□ -1.26
SMCO3-201ENST00000316048 BCAMP50895 628 aa7.17□□□□□ -1.26
SMCO3-201ENST00000316048 APLP1P51693 650 aa7.17□□□□□ -1.26
SMCO3-201ENST00000316048 SRPK2P78362 688 aaKnown RBP7.17□□□□□ -1.26
SMCO3-201ENST00000316048 PBXIP1Q96AQ6 731 aa7.17□□□□□ -1.26
SMCO3-201ENST00000316048 HRO43593 1189 aa7.16□□□□□ -1.26
SMCO3-201ENST00000316048 LSM11P83369 360 aaKnown RBP eCLIP7.16□□□□□ -1.26
SMCO3-201ENST00000316048 KCTD17Q8N5Z5 321 aa7.16□□□□□ -1.26
SMCO3-201ENST00000316048 TK2O00142 265 aa7.15□□□□□ -1.26
SMCO3-201ENST00000316048 CDCA8Q53HL2 280 aa7.15□□□□□ -1.26
SMCO3-201ENST00000316048 MAP10Q9P2G4 905 aa7.15□□□□□ -1.26
SMCO3-201ENST00000316048 LMOD1P29536 600 aaPredicted RBP7.15□□□□□ -1.27
SMCO3-201ENST00000316048 TFIP11Q9UBB9 837 aaKnown RBP7.15□□□□□ -1.27
SMCO3-201ENST00000316048 HPS5Q9UPZ3 1129 aa7.15□□□□□ -1.27
SMCO3-201ENST00000316048 LCE2DQ5TA82 110 aaPredicted RBP7.14□□□□□ -1.27
SMCO3-201ENST00000316048 LYPD8Q6UX82 237 aa7.14□□□□□ -1.27
SMCO3-201ENST00000316048 FBXO45P0C2W1 286 aa7.13□□□□□ -1.27
SMCO3-201ENST00000316048 DESI1Q6ICB0 168 aa7.13□□□□□ -1.27
SMCO3-201ENST00000316048 TBC1D9Q6ZT07 1266 aa7.13□□□□□ -1.27
SMCO3-201ENST00000316048 FAM163AQ96GL9 167 aaPredicted RBP7.13□□□□□ -1.27
SMCO3-201ENST00000316048 USB1Q9BQ65 265 aaKnown RBP7.13□□□□□ -1.27
SMCO3-201ENST00000316048 PIK3CDO00329 1044 aa7.13□□□□□ -1.27
SMCO3-201ENST00000316048 Q3C1V9 767 aa7.13□□□□□ -1.27
SMCO3-201ENST00000316048 BRICD5Q6PL45 260 aa7.13□□□□□ -1.27
SMCO3-201ENST00000316048 SCUBE3Q8IX30 993 aa7.13□□□□□ -1.27
SMCO3-201ENST00000316048 THAP11Q96EK4 314 aa7.12□□□□□ -1.27
SMCO3-201ENST00000316048 MAFBQ9Y5Q3 323 aaPredicted RBP7.12□□□□□ -1.27
SMCO3-201ENST00000316048 ACIN1Q9UKV3 1341 aaKnown RBP7.12□□□□□ -1.27
SMCO3-201ENST00000316048 SOWAHBA6NEL2 793 aa7.12□□□□□ -1.27
SMCO3-201ENST00000316048 F12P00748 615 aaPredicted RBP7.12□□□□□ -1.27
SMCO3-201ENST00000316048 ANKRD13DQ6ZTN6 518 aa7.12□□□□□ -1.27
SMCO3-201ENST00000316048 PPP4CP60510 307 aa7.11□□□□□ -1.27
SMCO3-201ENST00000316048 SEMA3FQ13275 785 aa7.11□□□□□ -1.27
SMCO3-201ENST00000316048 ANKK1Q8NFD2 765 aa7.11□□□□□ -1.27
SMCO3-201ENST00000316048 PRDM9Q9NQV7 894 aa7.11□□□□□ -1.27
SMCO3-201ENST00000316048 PCDHB3Q9Y5E6 796 aa7.11□□□□□ -1.27
SMCO3-201ENST00000316048 CCDC9Q9Y3X0 531 aaKnown RBP7.1□□□□□ -1.27
SMCO3-201ENST00000316048 NR1H3Q13133 447 aa7.09□□□□□ -1.27
SMCO3-201ENST00000316048 NPM2Q86SE8 214 aaKnown RBP7.09□□□□□ -1.27
SMCO3-201ENST00000316048 WBP1LQ9NX94 342 aa7.09□□□□□ -1.27
SMCO3-201ENST00000316048 FKBPLQ9UIM3 349 aa7.09□□□□□ -1.27
SMCO3-201ENST00000316048 GOLGA8CPA6NN73 597 aa7.09□□□□□ -1.28
SMCO3-201ENST00000316048 WNT2BQ93097 391 aa7.09□□□□□ -1.28
SMCO3-201ENST00000316048 GZF1Q9H116 711 aaPredicted RBP7.09□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms