RNA–Protein interactions for RNA: ENST00000302528.11

CLIP1-201, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 5 BASIC

Gene CLIP1, Length 5,833 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-201ENST00000302528 GOLGA6L7A0A1B0GV03 622 aa12.49□□□□□ -0.41
CLIP1-201ENST00000302528 SMARCE1Q969G3 411 aa12.49□□□□□ -0.41
CLIP1-201ENST00000302528 ENOX2Q16206 610 aaKnown RBP12.49□□□□□ -0.41
CLIP1-201ENST00000302528 NECTIN2Q92692 538 aa12.48□□□□□ -0.41
CLIP1-201ENST00000302528 WASHC4Q2M389 1173 aa12.48□□□□□ -0.41
CLIP1-201ENST00000302528 EZRP15311 586 aaKnown RBP12.48□□□□□ -0.41
CLIP1-201ENST00000302528 MAGEC2Q9UBF1 373 aaPredicted RBP12.48□□□□□ -0.41
CLIP1-201ENST00000302528 CCDC39Q9UFE4 941 aa12.48□□□□□ -0.41
CLIP1-201ENST00000302528 COG6Q9Y2V7 657 aa12.48□□□□□ -0.41
CLIP1-201ENST00000302528 EIF4G1Q04637 1599 aaKnown RBP12.47□□□□□ -0.41
CLIP1-201ENST00000302528 CCAR1Q8IX12 1150 aaKnown RBP12.47□□□□□ -0.41
CLIP1-201ENST00000302528 CDK5RAP3Q96JB5 506 aa12.47□□□□□ -0.41
CLIP1-201ENST00000302528 FILIP1LQ4L180 1135 aa12.47□□□□□ -0.41
CLIP1-201ENST00000302528 GOLGA6L10A6NI86 522 aa12.47□□□□□ -0.41
CLIP1-201ENST00000302528 PDCL3Q9H2J4 239 aa12.47□□□□□ -0.41
CLIP1-201ENST00000302528 INTS3Q68E01 1043 aaKnown RBP12.47□□□□□ -0.41
CLIP1-201ENST00000302528 ERC2O15083 957 aa12.46□□□□□ -0.41
CLIP1-201ENST00000302528 E9PSI1 815 aa12.46□□□□□ -0.41
CLIP1-201ENST00000302528 KIF3BO15066 747 aa12.46□□□□□ -0.41
CLIP1-201ENST00000302528 MEX3CQ5U5Q3 659 aaKnown RBP12.46□□□□□ -0.41
CLIP1-201ENST00000302528 CCDC97Q96F63 343 aaPredicted RBP12.46□□□□□ -0.41
CLIP1-201ENST00000302528 DDX19BQ9UMR2 479 aa12.46□□□□□ -0.41
CLIP1-201ENST00000302528 PLIN1O60240 522 aa12.46□□□□□ -0.41
CLIP1-201ENST00000302528 KIAA0754O94854 1291 aa12.46□□□□□ -0.41
CLIP1-201ENST00000302528 SMC2O95347 1197 aa12.46□□□□□ -0.41
CLIP1-201ENST00000302528 MTERF4Q7Z6M4 381 aaKnown RBP12.46□□□□□ -0.41
CLIP1-201ENST00000302528 NEUROD6Q96NK8 337 aa12.46□□□□□ -0.41
CLIP1-201ENST00000302528 KRT18P05783 430 aaKnown RBP12.46□□□□□ -0.42
CLIP1-201ENST00000302528 KDM4AO75164 1064 aa12.45□□□□□ -0.42
CLIP1-201ENST00000302528 MPHOSPH9Q99550 1183 aa12.45□□□□□ -0.42
CLIP1-201ENST00000302528 TRAK1Q9UPV9 953 aa12.45□□□□□ -0.42
CLIP1-201ENST00000302528 ARHGAP35Q9NRY4 1499 aa12.45□□□□□ -0.42
CLIP1-201ENST00000302528 CCP110O43303 1012 aa12.45□□□□□ -0.42
CLIP1-201ENST00000302528 BRPF1P55201 1214 aaPredicted RBP12.45□□□□□ -0.42
CLIP1-201ENST00000302528 FKBP5Q13451 457 aaPredicted RBP12.45□□□□□ -0.42
CLIP1-201ENST00000302528 HSP90AB4PQ58FF6 505 aa12.45□□□□□ -0.42
CLIP1-201ENST00000302528 API5Q9BZZ5 524 aaKnown RBP12.45□□□□□ -0.42
CLIP1-201ENST00000302528 TRIM5Q9C035 493 aa12.45□□□□□ -0.42
CLIP1-201ENST00000302528 ROCK1Q13464 1354 aa12.44□□□□□ -0.42
CLIP1-201ENST00000302528 DCAF8L1A6NGE4 600 aa12.44□□□□□ -0.42
CLIP1-201ENST00000302528 CRBNQ96SW2 442 aa12.44□□□□□ -0.42
CLIP1-201ENST00000302528 EFCAB2Q5VUJ9 269 aa12.44□□□□□ -0.42
CLIP1-201ENST00000302528 TAX1BP1Q86VP1 789 aa12.43□□□□□ -0.42
CLIP1-201ENST00000302528 ATP2B1P20020 1258 aa12.43□□□□□ -0.42
CLIP1-201ENST00000302528 TXLNAP40222 546 aa12.43□□□□□ -0.42
CLIP1-201ENST00000302528 DHX37Q8IY37 1157 aaKnown RBP12.43□□□□□ -0.42
CLIP1-201ENST00000302528 INCENPQ9NQS7 918 aa12.43□□□□□ -0.42
CLIP1-201ENST00000302528 SART3Q15020 963 aaKnown RBP12.43□□□□□ -0.42
CLIP1-201ENST00000302528 ZNHIT6Q9NWK9 470 aaKnown RBP12.43□□□□□ -0.42
CLIP1-201ENST00000302528 WASHC2CQ9Y4E1 1318 aa12.43□□□□□ -0.42
CLIP1-201ENST00000302528 EXOC6Q8TAG9 804 aa12.42□□□□□ -0.42
CLIP1-201ENST00000302528 PIP4K2AP48426 406 aaPredicted RBP12.42□□□□□ -0.42
CLIP1-201ENST00000302528 RNF214Q8ND24 703 aa12.42□□□□□ -0.42
CLIP1-201ENST00000302528 FMNL2Q96PY5 1086 aa12.42□□□□□ -0.42
CLIP1-201ENST00000302528 KINO60870 393 aaKnown RBP12.42□□□□□ -0.42
CLIP1-201ENST00000302528 NASPP49321 788 aaPredicted RBP12.42□□□□□ -0.42
CLIP1-201ENST00000302528 MYBBP1AQ9BQG0 1328 aaKnown RBP12.41□□□□□ -0.42
CLIP1-201ENST00000302528 CCDC181Q5TID7 509 aa12.41□□□□□ -0.42
CLIP1-201ENST00000302528 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.41□□□□□ -0.42
CLIP1-201ENST00000302528 ANKRD30AQ9BXX3 1397 aa12.41□□□□□ -0.42
CLIP1-201ENST00000302528 KIF15Q9NS87 1388 aa12.41□□□□□ -0.42
CLIP1-201ENST00000302528 LUC7LQ9NQ29 371 aaKnown RBP12.41□□□□□ -0.42
CLIP1-201ENST00000302528 PSMA5P28066 241 aa12.41□□□□□ -0.42
CLIP1-201ENST00000302528 RRP1P56182 461 aaKnown RBP12.4□□□□□ -0.42
CLIP1-201ENST00000302528 DZIP1LQ8IYY4 767 aaKnown RBP12.4□□□□□ -0.42
CLIP1-201ENST00000302528 STK11IPQ8N1F8 1099 aa12.4□□□□□ -0.42
CLIP1-201ENST00000302528 DYDC1Q8WWB3 177 aa12.4□□□□□ -0.42
CLIP1-201ENST00000302528 NEBLO76041 1014 aa12.4□□□□□ -0.42
CLIP1-201ENST00000302528 LETM1O95202 739 aaPredicted RBP12.4□□□□□ -0.42
CLIP1-201ENST00000302528 RABEP1Q15276 862 aa12.4□□□□□ -0.42
CLIP1-201ENST00000302528 CENPHQ9H3R5 247 aa12.4□□□□□ -0.42
CLIP1-201ENST00000302528 DEF6Q9H4E7 631 aa12.4□□□□□ -0.42
CLIP1-201ENST00000302528 ATAD2BQ9ULI0 1458 aa12.4□□□□□ -0.42
CLIP1-201ENST00000302528 RIC3Q7Z5B4 369 aa12.39□□□□□ -0.43
CLIP1-201ENST00000302528 CLASRPQ8N2M8 674 aaKnown RBP12.39□□□□□ -0.43
CLIP1-201ENST00000302528 PANK3Q9H999 370 aa12.38□□□□□ -0.43
CLIP1-201ENST00000302528 CCDC112Q8NEF3 446 aa12.38□□□□□ -0.43
CLIP1-201ENST00000302528 TBC1D2BQ9UPU7 963 aa12.38□□□□□ -0.43
CLIP1-201ENST00000302528 GBP2P32456 591 aaPredicted RBP12.38□□□□□ -0.43
CLIP1-201ENST00000302528 MRE11P49959 708 aa12.38□□□□□ -0.43
CLIP1-201ENST00000302528 KIF21BO75037 1637 aa12.38□□□□□ -0.43
CLIP1-201ENST00000302528 NINLQ9Y2I6 1382 aa12.38□□□□□ -0.43
CLIP1-201ENST00000302528 SLC3A2P08195 630 aaKnown RBP12.38□□□□□ -0.43
CLIP1-201ENST00000302528 PHF23Q9BUL5 403 aaPredicted RBP12.37□□□□□ -0.43
CLIP1-201ENST00000302528 TXLNBQ8N3L3 684 aa12.37□□□□□ -0.43
CLIP1-201ENST00000302528 FSD1Q9BTV5 496 aa12.37□□□□□ -0.43
CLIP1-201ENST00000302528 TANGO6Q9C0B7 1094 aa12.37□□□□□ -0.43
CLIP1-201ENST00000302528 ZHX3Q9H4I2 956 aa12.37□□□□□ -0.43
CLIP1-201ENST00000302528 AIMP1Q12904 312 aaKnown RBP12.37□□□□□ -0.43
CLIP1-201ENST00000302528 C22orf23Q9BZE7 217 aa12.37□□□□□ -0.43
CLIP1-201ENST00000302528 WASHC2AQ641Q2 1341 aa12.37□□□□□ -0.43
CLIP1-201ENST00000302528 AEBP2Q6ZN18 517 aaPredicted RBP12.36□□□□□ -0.43
CLIP1-201ENST00000302528 TAF3Q5VWG9 929 aa12.36□□□□□ -0.43
CLIP1-201ENST00000302528 PPFIBP1Q86W92 1011 aa12.36□□□□□ -0.43
CLIP1-201ENST00000302528 SERPINC1P01008 464 aa12.36□□□□□ -0.43
CLIP1-201ENST00000302528 RIPK4P57078 832 aa12.36□□□□□ -0.43
CLIP1-201ENST00000302528 LNPKQ9C0E8 428 aa12.36□□□□□ -0.43
CLIP1-201ENST00000302528 DIAPH1O60610 1272 aaKnown RBP12.36□□□□□ -0.43
CLIP1-201ENST00000302528 DESP17661 470 aa12.36□□□□□ -0.43
CLIP1-201ENST00000302528 EVC2Q86UK5 1308 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms