RNA–Protein interactions for RNA: ENST00000302303.5

RFX3-201, Transcript of regulatory factor X3, humanhuman

TSL 1 (best) BASIC

Gene RFX3, Length 1,522 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3-201ENST00000302303 XIRP1Q702N8 1843 aaKnown RBP13.37□□□□□ -0.27
RFX3-201ENST00000302303 PROSER2Q86WR7 435 aaPredicted RBP13.37□□□□□ -0.27
RFX3-201ENST00000302303 POGKQ9P215 609 aa13.37□□□□□ -0.27
RFX3-201ENST00000302303 TMEM94Q12767 1356 aa13.37□□□□□ -0.27
RFX3-201ENST00000302303 EIF3AQ14152 1382 aaKnown RBP13.37□□□□□ -0.27
RFX3-201ENST00000302303 QRICH2Q9H0J4 1663 aa13.36□□□□□ -0.27
RFX3-201ENST00000302303 TULP4Q9NRJ4 1543 aa13.36□□□□□ -0.27
RFX3-201ENST00000302303 DISP3Q9P2K9 1392 aa13.36□□□□□ -0.27
RFX3-201ENST00000302303 MINK1Q8N4C8 1332 aaPredicted RBP13.36□□□□□ -0.27
RFX3-201ENST00000302303 NCOA3Q9Y6Q9 1424 aa13.35□□□□□ -0.27
RFX3-201ENST00000302303 NALCNQ8IZF0 1738 aa13.34□□□□□ -0.27
RFX3-201ENST00000302303 ADGRB2O60241 1585 aa13.33□□□□□ -0.27
RFX3-201ENST00000302303 ADGRL3Q9HAR2 1447 aa13.33□□□□□ -0.28
RFX3-201ENST00000302303 WASLO00401 505 aaPredicted RBP13.32□□□□□ -0.28
RFX3-201ENST00000302303 WASHC2AQ641Q2 1341 aa13.31□□□□□ -0.28
RFX3-201ENST00000302303 CDK19Q9BWU1 502 aa13.31□□□□□ -0.28
RFX3-201ENST00000302303 C19orf44Q9H6X5 657 aa13.31□□□□□ -0.28
RFX3-201ENST00000302303 PRR36Q9H6K5 1346 aa13.31□□□□□ -0.28
RFX3-201ENST00000302303 KIF7Q2M1P5 1343 aa13.3□□□□□ -0.28
RFX3-201ENST00000302303 TMF1P82094 1093 aa13.29□□□□□ -0.28
RFX3-201ENST00000302303 CABP2Q9NPB3 220 aa13.29□□□□□ -0.28
RFX3-201ENST00000302303 CDC42BPGQ6DT37 1551 aa13.29□□□□□ -0.28
RFX3-201ENST00000302303 ZNF316A6NFI3 1004 aaPredicted RBP13.29□□□□□ -0.28
RFX3-201ENST00000302303 PUS7Q96PZ0 661 aaKnown RBP13.29□□□□□ -0.28
RFX3-201ENST00000302303 USP32Q8NFA0 1604 aa13.28□□□□□ -0.28
RFX3-201ENST00000302303 EVC2Q86UK5 1308 aa13.28□□□□□ -0.28
RFX3-201ENST00000302303 CCDC7Q96M83 1385 aa13.28□□□□□ -0.28
RFX3-201ENST00000302303 DCCP43146 1447 aa13.27□□□□□ -0.29
RFX3-201ENST00000302303 SLC24A1O60721 1099 aa13.27□□□□□ -0.29
RFX3-201ENST00000302303 ATP7BP35670 1465 aa13.26□□□□□ -0.29
RFX3-201ENST00000302303 FMN2Q9NZ56 1722 aa13.26□□□□□ -0.29
RFX3-201ENST00000302303 ADRA2BP18089 450 aa13.26□□□□□ -0.29
RFX3-201ENST00000302303 MST1RQ04912 1400 aa13.26□□□□□ -0.29
RFX3-201ENST00000302303 NUTM2FA1L443 756 aa13.25□□□□□ -0.29
RFX3-201ENST00000302303 NUDT16Q96DE0 195 aaKnown RBP13.25□□□□□ -0.29
RFX3-201ENST00000302303 SRPK2P78362 688 aaKnown RBP13.24□□□□□ -0.29
RFX3-201ENST00000302303 MSH6P52701 1360 aa13.24□□□□□ -0.29
RFX3-201ENST00000302303 C14orf37Q86TY3 774 aa13.23□□□□□ -0.29
RFX3-201ENST00000302303 SLC12A5Q9H2X9 1139 aa13.23□□□□□ -0.29
RFX3-201ENST00000302303 C1orf167Q5SNV9 1468 aa13.23□□□□□ -0.29
RFX3-201ENST00000302303 RGPD8O14715 1765 aaPredicted RBP13.23□□□□□ -0.29
RFX3-201ENST00000302303 CADPS2Q86UW7 1296 aa13.23□□□□□ -0.29
RFX3-201ENST00000302303 CERKQ8TCT0 537 aa13.23□□□□□ -0.29
RFX3-201ENST00000302303 CCDC61Q9Y6R9 512 aa13.23□□□□□ -0.29
RFX3-201ENST00000302303 ANKARQ7Z5J8 1434 aa13.23□□□□□ -0.29
RFX3-201ENST00000302303 CD163L1Q9NR16 1453 aa13.23□□□□□ -0.29
RFX3-201ENST00000302303 MYOM1P52179 1685 aa13.22□□□□□ -0.29
RFX3-201ENST00000302303 PLEKHG3A1L390 1219 aa13.22□□□□□ -0.29
RFX3-201ENST00000302303 ORAI2Q96SN7 254 aa13.22□□□□□ -0.29
RFX3-201ENST00000302303 CABP1Q9NZU7 370 aa13.22□□□□□ -0.29
RFX3-201ENST00000302303 TOPAZ1Q8N9V7 1692 aa13.21□□□□□ -0.29
RFX3-201ENST00000302303 ATAD2Q6PL18 1390 aa13.21□□□□□ -0.29
RFX3-201ENST00000302303 ATF3P18847 181 aa13.21□□□□□ -0.29
RFX3-201ENST00000302303 CDCA8Q53HL2 280 aa13.21□□□□□ -0.29
RFX3-201ENST00000302303 SLAIN2Q9P270 581 aa13.21□□□□□ -0.29
RFX3-201ENST00000302303 IQSEC2Q5JU85 1478 aa13.2□□□□□ -0.3
RFX3-201ENST00000302303 CARD14Q9BXL6 1004 aa13.19□□□□□ -0.3
RFX3-201ENST00000302303 CPSF1Q10570 1443 aaKnown RBP13.19□□□□□ -0.3
RFX3-201ENST00000302303 PPIP5K1Q6PFW1 1433 aa13.19□□□□□ -0.3
RFX3-201ENST00000302303 PER1O15534 1290 aaPredicted RBP13.18□□□□□ -0.3
RFX3-201ENST00000302303 POLR3AO14802 1390 aaPredicted RBP13.18□□□□□ -0.3
RFX3-201ENST00000302303 BRINP3Q76B58 766 aa13.18□□□□□ -0.3
RFX3-201ENST00000302303 PMFBP1Q8TBY8 1022 aa13.18□□□□□ -0.3
RFX3-201ENST00000302303 POLR3GLQ9BT43 218 aa13.18□□□□□ -0.3
RFX3-201ENST00000302303 ACEP12821 1306 aa13.17□□□□□ -0.3
RFX3-201ENST00000302303 DDX10Q13206 875 aaKnown RBP13.17□□□□□ -0.3
RFX3-201ENST00000302303 ESCO1Q5FWF5 840 aa13.17□□□□□ -0.3
RFX3-201ENST00000302303 TMC1Q8TDI8 760 aa13.16□□□□□ -0.3
RFX3-201ENST00000302303 PANK3Q9H999 370 aa13.16□□□□□ -0.3
RFX3-201ENST00000302303 PHF8Q9UPP1 1060 aa13.16□□□□□ -0.3
RFX3-201ENST00000302303 SSH2Q76I76 1423 aa13.16□□□□□ -0.3
RFX3-201ENST00000302303 A0A1W2PP64 1363 aa13.16□□□□□ -0.3
RFX3-201ENST00000302303 NINLQ9Y2I6 1382 aa13.16□□□□□ -0.3
RFX3-201ENST00000302303 DDX17Q92841 729 aaKnown RBP13.15□□□□□ -0.3
RFX3-201ENST00000302303 ANKRD36BQ8N2N9 1353 aa13.15□□□□□ -0.3
RFX3-201ENST00000302303 ITSN1Q15811 1721 aa13.14□□□□□ -0.31
RFX3-201ENST00000302303 FOXO3O43524 673 aa13.13□□□□□ -0.31
RFX3-201ENST00000302303 AKAP12Q02952 1782 aa13.12□□□□□ -0.31
RFX3-201ENST00000302303 TOM1O60784 492 aa13.12□□□□□ -0.31
RFX3-201ENST00000302303 ZNF692Q9BU19 519 aaPredicted RBP13.12□□□□□ -0.31
RFX3-201ENST00000302303 USP6P35125 1406 aa13.11□□□□□ -0.31
RFX3-201ENST00000302303 UBAP1LF5GYI3 381 aa13.11□□□□□ -0.31
RFX3-201ENST00000302303 KIF1AQ12756 1690 aa13.1□□□□□ -0.31
RFX3-201ENST00000302303 ROBO1Q9Y6N7 1651 aa13.1□□□□□ -0.31
RFX3-201ENST00000302303 PXDNQ92626 1479 aa13.1□□□□□ -0.31
RFX3-201ENST00000302303 NGDNQ8NEJ9 315 aaKnown RBP13.1□□□□□ -0.31
RFX3-201ENST00000302303 TERF2IPQ9NYB0 399 aa13.1□□□□□ -0.31
RFX3-201ENST00000302303 MON2Q7Z3U7 1717 aa13.1□□□□□ -0.31
RFX3-201ENST00000302303 SOS2Q07890 1332 aaPredicted RBP13.1□□□□□ -0.31
RFX3-201ENST00000302303 NRKQ7Z2Y5 1582 aa13.1□□□□□ -0.31
RFX3-201ENST00000302303 KTN1Q86UP2 1357 aaKnown RBP13.09□□□□□ -0.31
RFX3-201ENST00000302303 XPCQ01831 940 aaPredicted RBP13.09□□□□□ -0.31
RFX3-201ENST00000302303 AMER1Q5JTC6 1135 aaPredicted RBP13.09□□□□□ -0.31
RFX3-201ENST00000302303 NHSL1Q5SYE7 1610 aa13.09□□□□□ -0.31
RFX3-201ENST00000302303 KRT28Q7Z3Y7 464 aa13.08□□□□□ -0.31
RFX3-201ENST00000302303 HDGFL2Q7Z4V5 671 aaPredicted RBP13.08□□□□□ -0.31
RFX3-201ENST00000302303 NSD3Q9BZ95 1437 aa13.08□□□□□ -0.31
RFX3-201ENST00000302303 TRPM3Q9HCF6 1732 aaPredicted RBP13.08□□□□□ -0.32
RFX3-201ENST00000302303 TTC21BQ7Z4L5 1316 aa13.08□□□□□ -0.32
RFX3-201ENST00000302303 FYB1O15117 783 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms