RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 DNAI2Q9GZS0 605 aa16.66■□□□□ 0.26
CCDC88A-201ENST00000263630 EID1Q9Y6B2 187 aa16.66■□□□□ 0.26
CCDC88A-201ENST00000263630 CEP164Q9UPV0 1460 aa16.66■□□□□ 0.26
CCDC88A-201ENST00000263630 PSMA5P28066 241 aa16.65■□□□□ 0.26
CCDC88A-201ENST00000263630 GRIPAP1Q4V328 841 aa16.65■□□□□ 0.26
CCDC88A-201ENST00000263630 SMC2O95347 1197 aa16.65■□□□□ 0.26
CCDC88A-201ENST00000263630 MLECQ14165 292 aa16.65■□□□□ 0.26
CCDC88A-201ENST00000263630 TRIM5Q9C035 493 aa16.64■□□□□ 0.26
CCDC88A-201ENST00000263630 MSH5O43196 834 aa16.64■□□□□ 0.25
CCDC88A-201ENST00000263630 SIN3AQ96ST3 1273 aa16.64■□□□□ 0.25
CCDC88A-201ENST00000263630 LRRCC1Q9C099 1032 aa16.64■□□□□ 0.25
CCDC88A-201ENST00000263630 RBM33Q96EV2 1170 aaKnown RBP16.64■□□□□ 0.25
CCDC88A-201ENST00000263630 KIF27Q86VH2 1401 aa16.64■□□□□ 0.25
CCDC88A-201ENST00000263630 NEBLO76041 1014 aa16.64■□□□□ 0.25
CCDC88A-201ENST00000263630 GOLGA6L10A0A0M3HER8 536 aa16.64■□□□□ 0.25
CCDC88A-201ENST00000263630 DCAF8L1A6NGE4 600 aa16.64■□□□□ 0.25
CCDC88A-201ENST00000263630 EVA1CP58658 441 aa16.63■□□□□ 0.25
CCDC88A-201ENST00000263630 DACH1Q9UI36 760 aa16.63■□□□□ 0.25
CCDC88A-201ENST00000263630 PDCL3Q9H2J4 239 aa16.63■□□□□ 0.25
CCDC88A-201ENST00000263630 CCDC146Q8IYE0 955 aa16.63■□□□□ 0.25
CCDC88A-201ENST00000263630 SLC3A2P08195 630 aaKnown RBP16.63■□□□□ 0.25
CCDC88A-201ENST00000263630 ZKSCAN2Q63HK3 967 aa16.63■□□□□ 0.25
CCDC88A-201ENST00000263630 CENPHQ9H3R5 247 aa16.63■□□□□ 0.25
CCDC88A-201ENST00000263630 G3BP1Q13283 466 aaKnown RBP eCLIP16.63■□□□□ 0.25
CCDC88A-201ENST00000263630 BCCIPQ9P287 314 aaKnown RBP eCLIP16.62■□□□□ 0.25
CCDC88A-201ENST00000263630 MRE11P49959 708 aa16.62■□□□□ 0.25
CCDC88A-201ENST00000263630 DDX23Q9BUQ8 820 aaKnown RBP16.62■□□□□ 0.25
CCDC88A-201ENST00000263630 IKQ13123 557 aaPredicted RBP16.62■□□□□ 0.25
CCDC88A-201ENST00000263630 ARHGAP35Q9NRY4 1499 aa16.62■□□□□ 0.25
CCDC88A-201ENST00000263630 PDCP20941 246 aa16.61■□□□□ 0.25
CCDC88A-201ENST00000263630 KRT18P05783 430 aaKnown RBP16.61■□□□□ 0.25
CCDC88A-201ENST00000263630 NLRP13Q86W25 1043 aa16.61■□□□□ 0.25
CCDC88A-201ENST00000263630 DDX19BQ9UMR2 479 aa16.61■□□□□ 0.25
CCDC88A-201ENST00000263630 DDX11Q96FC9 970 aa16.61■□□□□ 0.25
CCDC88A-201ENST00000263630 TEFQ10587 303 aa16.61■□□□□ 0.25
CCDC88A-201ENST00000263630 ANKRD18BA2A2Z9 1011 aa16.6■□□□□ 0.25
CCDC88A-201ENST00000263630 MAP2K1Q02750 393 aaPredicted RBP16.6■□□□□ 0.25
CCDC88A-201ENST00000263630 HSPA5P11021 654 aaKnown RBP16.6■□□□□ 0.25
CCDC88A-201ENST00000263630 PPFIBP1Q86W92 1011 aa16.6■□□□□ 0.25
CCDC88A-201ENST00000263630 PKNOX2Q96KN3 472 aa16.6■□□□□ 0.25
CCDC88A-201ENST00000263630 JAKMIP3Q5VZ66 844 aa16.59■□□□□ 0.25
CCDC88A-201ENST00000263630 MBD3O95983 291 aa16.59■□□□□ 0.25
CCDC88A-201ENST00000263630 PDE4AP27815 886 aa16.59■□□□□ 0.25
CCDC88A-201ENST00000263630 KIF15Q9NS87 1388 aa16.58■□□□□ 0.25
CCDC88A-201ENST00000263630 E9PSI1 815 aa16.58■□□□□ 0.25
CCDC88A-201ENST00000263630 JMYQ8N9B5 988 aa16.58■□□□□ 0.25
CCDC88A-201ENST00000263630 ZNF396Q96N95 335 aaPredicted RBP16.58■□□□□ 0.25
CCDC88A-201ENST00000263630 SETD5Q9C0A6 1442 aa16.57■□□□□ 0.24
CCDC88A-201ENST00000263630 SAMD1Q6SPF0 538 aaPredicted RBP16.57■□□□□ 0.24
CCDC88A-201ENST00000263630 EIF4G1Q04637 1599 aaKnown RBP16.56■□□□□ 0.24
CCDC88A-201ENST00000263630 CETN2P41208 172 aa16.56■□□□□ 0.24
CCDC88A-201ENST00000263630 BRPF1P55201 1214 aaPredicted RBP16.56■□□□□ 0.24
CCDC88A-201ENST00000263630 TSPY26PQ9H489 355 aa16.55■□□□□ 0.24
CCDC88A-201ENST00000263630 KAT6BQ8WYB5 2073 aa16.55■□□□□ 0.24
CCDC88A-201ENST00000263630 ANAPC15P60006 121 aa16.55■□□□□ 0.24
CCDC88A-201ENST00000263630 FAM107BQ9H098 131 aa16.55■□□□□ 0.24
CCDC88A-201ENST00000263630 LTV1Q96GA3 475 aaPredicted RBP16.55■□□□□ 0.24
CCDC88A-201ENST00000263630 SHTN1A0MZ66 631 aa16.55■□□□□ 0.24
CCDC88A-201ENST00000263630 CBFA2T2O43439 604 aa16.55■□□□□ 0.24
CCDC88A-201ENST00000263630 POTEJP0CG39 1038 aa16.55■□□□□ 0.24
CCDC88A-201ENST00000263630 MCM3P25205 808 aa16.55■□□□□ 0.24
CCDC88A-201ENST00000263630 MCM2P49736 904 aa16.54■□□□□ 0.24
CCDC88A-201ENST00000263630 SERPINC1P01008 464 aa16.53■□□□□ 0.24
CCDC88A-201ENST00000263630 BCL11BQ9C0K0 894 aaPredicted RBP16.53■□□□□ 0.24
CCDC88A-201ENST00000263630 CCDC175P0C221 793 aa16.53■□□□□ 0.24
CCDC88A-201ENST00000263630 CFAP45Q9UL16 551 aa16.53■□□□□ 0.24
CCDC88A-201ENST00000263630 PODXL2Q9NZ53 605 aa16.53■□□□□ 0.24
CCDC88A-201ENST00000263630 ERCC6Q03468 1493 aa16.53■□□□□ 0.24
CCDC88A-201ENST00000263630 CCDC27Q2M243 656 aa16.53■□□□□ 0.24
CCDC88A-201ENST00000263630 BAZ1BQ9UIG0 1483 aaKnown RBP16.53■□□□□ 0.24
CCDC88A-201ENST00000263630 FOSBP53539 338 aa16.53■□□□□ 0.24
CCDC88A-201ENST00000263630 TSHZ2Q9NRE2 1034 aa16.53■□□□□ 0.24
CCDC88A-201ENST00000263630 HIP1O00291 1037 aa16.52■□□□□ 0.24
CCDC88A-201ENST00000263630 MAP9Q49MG5 647 aa16.52■□□□□ 0.24
CCDC88A-201ENST00000263630 GGT6Q6P531 493 aa16.52■□□□□ 0.24
CCDC88A-201ENST00000263630 LRRFIP2Q9Y608 721 aaKnown RBP16.52■□□□□ 0.23
CCDC88A-201ENST00000263630 UACAQ9BZF9 1416 aa16.52■□□□□ 0.23
CCDC88A-201ENST00000263630 GBP3Q9H0R5 595 aa16.52■□□□□ 0.23
CCDC88A-201ENST00000263630 AAMPQ13685 434 aa16.51■□□□□ 0.23
CCDC88A-201ENST00000263630 MICALCLQ6ZW33 695 aa16.51■□□□□ 0.23
CCDC88A-201ENST00000263630 CNTROBQ8N137 903 aa16.51■□□□□ 0.23
CCDC88A-201ENST00000263630 TBC1D2BQ9UPU7 963 aa16.51■□□□□ 0.23
CCDC88A-201ENST00000263630 ZWINTO95229 277 aa16.5■□□□□ 0.23
CCDC88A-201ENST00000263630 GIGYF2Q6Y7W6 1299 aaKnown RBP16.5■□□□□ 0.23
CCDC88A-201ENST00000263630 API5Q9BZZ5 524 aaKnown RBP16.5■□□□□ 0.23
CCDC88A-201ENST00000263630 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.5■□□□□ 0.23
CCDC88A-201ENST00000263630 GCOM1H8Y6P7 765 aaPredicted RBP16.5■□□□□ 0.23
CCDC88A-201ENST00000263630 MYZAPP0CAP1 466 aa16.5■□□□□ 0.23
CCDC88A-201ENST00000263630 ERC1Q8IUD2 1116 aa16.5■□□□□ 0.23
CCDC88A-201ENST00000263630 PDCL2Q8N4E4 241 aa16.5■□□□□ 0.23
CCDC88A-201ENST00000263630 WASHC4Q2M389 1173 aa16.49■□□□□ 0.23
CCDC88A-201ENST00000263630 NGEFQ8N5V2 710 aa16.49■□□□□ 0.23
CCDC88A-201ENST00000263630 COG3Q96JB2 828 aa16.49■□□□□ 0.23
CCDC88A-201ENST00000263630 CCDC192P0DO97 292 aa16.49■□□□□ 0.23
CCDC88A-201ENST00000263630 CCDC148Q8NFR7 591 aa16.49■□□□□ 0.23
CCDC88A-201ENST00000263630 DZIP1LQ8IYY4 767 aaKnown RBP16.49■□□□□ 0.23
CCDC88A-201ENST00000263630 ZNF397Q8NF99 534 aaPredicted RBP16.49■□□□□ 0.23
CCDC88A-201ENST00000263630 NOL12Q9UGY1 213 aaKnown RBP eCLIP16.49■□□□□ 0.23
CCDC88A-201ENST00000263630 V9GYY5 206 aaPredicted RBP16.49■□□□□ 0.23
CCDC88A-201ENST00000263630 TANGO6Q9C0B7 1094 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms