RNA–Protein interactions for RNA: ENST00000234420.9

MSH6-201, Transcript of mutS homolog 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH6, Length 7,476 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-201ENST00000234420 NFKBIBQ15653 356 aa13.39□□□□□ -0.27
MSH6-201ENST00000234420 TICAM2Q86XR7 235 aa13.39□□□□□ -0.27
MSH6-201ENST00000234420 DDX54Q8TDD1 881 aaKnown RBP13.39□□□□□ -0.27
MSH6-201ENST00000234420 RNF214Q8ND24 703 aa13.39□□□□□ -0.27
MSH6-201ENST00000234420 BCL2L13Q9BXK5 485 aa13.39□□□□□ -0.27
MSH6-201ENST00000234420 BICD2Q8TD16 824 aa13.38□□□□□ -0.27
MSH6-201ENST00000234420 MINK1Q8N4C8 1332 aaPredicted RBP13.38□□□□□ -0.27
MSH6-201ENST00000234420 INCENPQ9NQS7 918 aa13.38□□□□□ -0.27
MSH6-201ENST00000234420 SASS6Q6UVJ0 657 aa13.38□□□□□ -0.27
MSH6-201ENST00000234420 ANKRD20A12PQ8NF67 263 aa13.38□□□□□ -0.27
MSH6-201ENST00000234420 TRERF1Q96PN7 1200 aa13.37□□□□□ -0.27
MSH6-201ENST00000234420 MRE11P49959 708 aa13.37□□□□□ -0.27
MSH6-201ENST00000234420 NLRP2Q9NX02 1062 aa13.37□□□□□ -0.27
MSH6-201ENST00000234420 PDILTQ8N807 584 aa13.37□□□□□ -0.27
MSH6-201ENST00000234420 ZRSR2Q15696 482 aaKnown RBP13.37□□□□□ -0.27
MSH6-201ENST00000234420 CLASRPQ8N2M8 674 aaKnown RBP13.37□□□□□ -0.27
MSH6-201ENST00000234420 SLTMQ9NWH9 1034 aaKnown RBP eCLIP13.37□□□□□ -0.27
MSH6-201ENST00000234420 UQCRHLA0A096LP55 91 aa13.36□□□□□ -0.27
MSH6-201ENST00000234420 UQCRHP07919 91 aa13.36□□□□□ -0.27
MSH6-201ENST00000234420 ZHX3Q9H4I2 956 aa13.36□□□□□ -0.27
MSH6-201ENST00000234420 FAM69CQ0P6D2 419 aa13.36□□□□□ -0.27
MSH6-201ENST00000234420 GOLGA6L7A0A1B0GV03 622 aa13.36□□□□□ -0.27
MSH6-201ENST00000234420 WASHC4Q2M389 1173 aa13.35□□□□□ -0.27
MSH6-201ENST00000234420 RIC3Q7Z5B4 369 aa13.35□□□□□ -0.27
MSH6-201ENST00000234420 CHMP5Q9NZZ3 219 aa13.35□□□□□ -0.27
MSH6-201ENST00000234420 ANKRD62A6NC57 917 aa13.35□□□□□ -0.27
MSH6-201ENST00000234420 ANO2Q9NQ90 1003 aa13.35□□□□□ -0.27
MSH6-201ENST00000234420 PIBF1Q8WXW3 757 aa13.35□□□□□ -0.27
MSH6-201ENST00000234420 STAC3Q96MF2 364 aa13.34□□□□□ -0.27
MSH6-201ENST00000234420 TERF2IPQ9NYB0 399 aa13.34□□□□□ -0.27
MSH6-201ENST00000234420 CGNQ9P2M7 1197 aaKnown RBP13.34□□□□□ -0.27
MSH6-201ENST00000234420 COG3Q96JB2 828 aa13.34□□□□□ -0.27
MSH6-201ENST00000234420 NEBLO76041 1014 aa13.33□□□□□ -0.27
MSH6-201ENST00000234420 ZHX1Q9UKY1 873 aaPredicted RBP13.33□□□□□ -0.27
MSH6-201ENST00000234420 VTI1AQ96AJ9 217 aa13.33□□□□□ -0.28
MSH6-201ENST00000234420 HMGN5P82970 282 aaKnown RBP13.33□□□□□ -0.28
MSH6-201ENST00000234420 ESCO1Q5FWF5 840 aa13.33□□□□□ -0.28
MSH6-201ENST00000234420 TRDNQ13061 729 aa13.33□□□□□ -0.28
MSH6-201ENST00000234420 KIF6Q6ZMV9 814 aa13.33□□□□□ -0.28
MSH6-201ENST00000234420 CCDC173Q0VFZ6 552 aa13.32□□□□□ -0.28
MSH6-201ENST00000234420 BBXQ8WY36 941 aaPredicted RBP13.32□□□□□ -0.28
MSH6-201ENST00000234420 PKD2Q13563 968 aa13.32□□□□□ -0.28
MSH6-201ENST00000234420 CRBNQ96SW2 442 aa13.32□□□□□ -0.28
MSH6-201ENST00000234420 ZMYND15Q9H091 742 aa13.32□□□□□ -0.28
MSH6-201ENST00000234420 ADAMTS2O95450 1211 aa13.32□□□□□ -0.28
MSH6-201ENST00000234420 CBX1P83916 185 aa13.31□□□□□ -0.28
MSH6-201ENST00000234420 ANKRD45Q5TZF3 282 aa13.31□□□□□ -0.28
MSH6-201ENST00000234420 SCLT1Q96NL6 688 aa13.31□□□□□ -0.28
MSH6-201ENST00000234420 CLEC11AQ9Y240 323 aa13.31□□□□□ -0.28
MSH6-201ENST00000234420 CPLX1O14810 134 aa13.31□□□□□ -0.28
MSH6-201ENST00000234420 ENOX2Q16206 610 aaKnown RBP13.31□□□□□ -0.28
MSH6-201ENST00000234420 PDE3BQ13370 1112 aa13.31□□□□□ -0.28
MSH6-201ENST00000234420 MPNDQ8N594 471 aa13.31□□□□□ -0.28
MSH6-201ENST00000234420 TRMT1LQ7Z2T5 733 aaKnown RBP13.3□□□□□ -0.28
MSH6-201ENST00000234420 SPC24Q8NBT2 197 aa13.3□□□□□ -0.28
MSH6-201ENST00000234420 CCDC47Q96A33 483 aaKnown RBP13.3□□□□□ -0.28
MSH6-201ENST00000234420 ATP2B1P20020 1258 aa13.3□□□□□ -0.28
MSH6-201ENST00000234420 FAM193AP78312 1265 aa13.3□□□□□ -0.28
MSH6-201ENST00000234420 BCCIPQ9P287 314 aaKnown RBP eCLIP13.3□□□□□ -0.28
MSH6-201ENST00000234420 XPCQ01831 940 aaPredicted RBP13.29□□□□□ -0.28
MSH6-201ENST00000234420 RALBP1Q15311 655 aa13.29□□□□□ -0.28
MSH6-201ENST00000234420 IFIT2P09913 472 aaKnown RBP13.29□□□□□ -0.28
MSH6-201ENST00000234420 UBE2Q2Q8WVN8 375 aa13.29□□□□□ -0.28
MSH6-201ENST00000234420 RAPGEF4Q8WZA2 1011 aa13.29□□□□□ -0.28
MSH6-201ENST00000234420 TRIM5Q9C035 493 aa13.29□□□□□ -0.28
MSH6-201ENST00000234420 CENPQQ7L2Z9 268 aaPredicted RBP13.29□□□□□ -0.28
MSH6-201ENST00000234420 MAP3K9P80192 1104 aa13.29□□□□□ -0.28
MSH6-201ENST00000234420 VPS37CA5D8V6 355 aaPredicted RBP13.28□□□□□ -0.28
MSH6-201ENST00000234420 NF2P35240 595 aa13.28□□□□□ -0.28
MSH6-201ENST00000234420 DRC1Q96MC2 740 aa13.28□□□□□ -0.28
MSH6-201ENST00000234420 GOLGA6L10A6NI86 522 aa13.28□□□□□ -0.28
MSH6-201ENST00000234420 TAX1BP1Q86VP1 789 aa13.28□□□□□ -0.28
MSH6-201ENST00000234420 HOOK1Q9UJC3 728 aaKnown RBP13.28□□□□□ -0.28
MSH6-201ENST00000234420 KRT18P05783 430 aaKnown RBP13.28□□□□□ -0.28
MSH6-201ENST00000234420 HMOX1P09601 288 aa13.27□□□□□ -0.28
MSH6-201ENST00000234420 MYO6Q9UM54 1294 aa13.27□□□□□ -0.28
MSH6-201ENST00000234420 TRAK2O60296 914 aa13.27□□□□□ -0.29
MSH6-201ENST00000234420 CAVIN1Q6NZI2 390 aaKnown RBP13.27□□□□□ -0.29
MSH6-201ENST00000234420 BAZ1BQ9UIG0 1483 aaKnown RBP13.27□□□□□ -0.29
MSH6-201ENST00000234420 CDK5RAP3Q96JB5 506 aa13.26□□□□□ -0.29
MSH6-201ENST00000234420 BRPF1P55201 1214 aaPredicted RBP13.26□□□□□ -0.29
MSH6-201ENST00000234420 LMOD3Q0VAK6 560 aa13.26□□□□□ -0.29
MSH6-201ENST00000234420 KTN1Q86UP2 1357 aaKnown RBP13.26□□□□□ -0.29
MSH6-201ENST00000234420 GOLGA6L10A0A0M3HER8 536 aa13.25□□□□□ -0.29
MSH6-201ENST00000234420 TOM1L2Q6ZVM7 507 aa13.25□□□□□ -0.29
MSH6-201ENST00000234420 CNNM1Q9NRU3 951 aa13.25□□□□□ -0.29
MSH6-201ENST00000234420 OFD1O75665 1012 aa13.25□□□□□ -0.29
MSH6-201ENST00000234420 SEPT7Q16181 437 aaKnown RBP13.25□□□□□ -0.29
MSH6-201ENST00000234420 EXOC6Q8TAG9 804 aa13.25□□□□□ -0.29
MSH6-201ENST00000234420 CENPJQ9HC77 1338 aaPredicted RBP13.25□□□□□ -0.29
MSH6-201ENST00000234420 SMC2O95347 1197 aa13.25□□□□□ -0.29
MSH6-201ENST00000234420 SYCP1Q15431 976 aa13.24□□□□□ -0.29
MSH6-201ENST00000234420 CCDC112Q8NEF3 446 aa13.24□□□□□ -0.29
MSH6-201ENST00000234420 FAM177A1Q8N128 213 aaPredicted RBP13.24□□□□□ -0.29
MSH6-201ENST00000234420 EIF3JO75822 258 aaKnown RBP13.24□□□□□ -0.29
MSH6-201ENST00000234420 CCDC102AQ96A19 550 aa13.24□□□□□ -0.29
MSH6-201ENST00000234420 HSPA5P11021 654 aaKnown RBP13.23□□□□□ -0.29
MSH6-201ENST00000234420 MYL6BP14649 208 aa13.23□□□□□ -0.29
MSH6-201ENST00000234420 CLGNO14967 610 aa13.23□□□□□ -0.29
MSH6-201ENST00000234420 PDCL2Q8N4E4 241 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 84.1 ms