RNA–Protein interactions for RNA: ENSMUST00000002708.4

Shh-201, Transcript of Sonic hedgehog protein, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Shh, Length 2,847 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Shh-201ENSMUST00000002708 Tspyl2Q7TQI8 677 aa21.36■■□□□ 1.01
Shh-201ENSMUST00000002708 Plekhh1Q80TI1 1356 aa21.36■■□□□ 1.01
Shh-201ENSMUST00000002708 AU022751B1B0V2 589 aa21.35■■□□□ 1.01
Shh-201ENSMUST00000002708 Uggt1Q6P5E4 1551 aa21.35■■□□□ 1.01
Shh-201ENSMUST00000002708 Atp10aO54827 1508 aa21.35■■□□□ 1.01
Shh-201ENSMUST00000002708 NudcO35685 332 aaKnown RBP21.35■■□□□ 1.01
Shh-201ENSMUST00000002708 Talpid3E9PV87 1520 aa21.35■■□□□ 1.01
Shh-201ENSMUST00000002708 Irx3P81067 507 aa21.33■■□□□ 1.01
Shh-201ENSMUST00000002708 4930567H17RikQ3V0K5 233 aa21.33■■□□□ 1.01
Shh-201ENSMUST00000002708 Ccdc30Q8BVF4 654 aa21.33■■□□□ 1.01
Shh-201ENSMUST00000002708 Golga2Q921M4 999 aa21.33■■□□□ 1.01
Shh-201ENSMUST00000002708 Mbd3Q9Z2D8 285 aaKnown RBP21.33■■□□□ 1
Shh-201ENSMUST00000002708 AdgbG3UZ78 1657 aa21.32■■□□□ 1
Shh-201ENSMUST00000002708 Cdc42bpgQ80UW5 1551 aa21.32■■□□□ 1
Shh-201ENSMUST00000002708 Kiaa1107Q80TK0 1369 aa21.31■■□□□ 1
Shh-201ENSMUST00000002708 ArxO35085 564 aa21.31■■□□□ 1
Shh-201ENSMUST00000002708 Dnai1Q8C0M8 701 aa21.31■■□□□ 1
Shh-201ENSMUST00000002708 Pabpn1Q8CCS6 302 aaKnown RBP21.31■■□□□ 1
Shh-201ENSMUST00000002708 Akap12Q9WTQ5 1684 aa21.31■■□□□ 1
Shh-201ENSMUST00000002708 Cul9Q80TT8 1865 aa21.31■■□□□ 1
Shh-201ENSMUST00000002708 Plcd4Q8K3R3 807 aa21.3■■□□□ 1
Shh-201ENSMUST00000002708 Ino80Q6ZPV2 1559 aa21.3■■□□□ 1
Shh-201ENSMUST00000002708 Dip2cE9PWR4 1557 aa21.29■■□□□ 1
Shh-201ENSMUST00000002708 Gprasp1Q5U4C1 1347 aa21.29■■□□□ 1
Shh-201ENSMUST00000002708 Smc5Q8CG46 1101 aaKnown RBP21.28■■□□□ 1
Shh-201ENSMUST00000002708 AglF8VPN4 1532 aa21.28■■□□□ 1
Shh-201ENSMUST00000002708 Trim30dE9PWL0 497 aa21.28■■□□□ 1
Shh-201ENSMUST00000002708 Eif2s2Q99L45 331 aaKnown RBP21.28■■□□□ 1
Shh-201ENSMUST00000002708 RereQ80TZ9 1558 aa21.27■■□□□ 1
Shh-201ENSMUST00000002708 Ccdc9Q8VC31 543 aaKnown RBP21.27■■□□□ 1
Shh-201ENSMUST00000002708 Lrrc7Q80TE7 1490 aa21.27■■□□□ 1
Shh-201ENSMUST00000002708 Tecpr2Q3UH45 1423 aa21.27■□□□□ 0.99
Shh-201ENSMUST00000002708 Cfap65Q3V0B4 1847 aa21.26■□□□□ 0.99
Shh-201ENSMUST00000002708 PalldQ9ET54 1408 aa21.26■□□□□ 0.99
Shh-201ENSMUST00000002708 Pank1Q8K4K6 548 aa21.25■□□□□ 0.99
Shh-201ENSMUST00000002708 IqubQ8CDK3 788 aa21.25■□□□□ 0.99
Shh-201ENSMUST00000002708 Knl1Q66JQ7 1612 aa21.24■□□□□ 0.99
Shh-201ENSMUST00000002708 Uspl1Q3ULM6 1089 aa21.24■□□□□ 0.99
Shh-201ENSMUST00000002708 Armcx1Q9CX83 456 aa21.24■□□□□ 0.99
Shh-201ENSMUST00000002708 Plxnc1Q9QZC2 1574 aa21.23■□□□□ 0.99
Shh-201ENSMUST00000002708 Ift172Q6VH22 1749 aa21.23■□□□□ 0.99
Shh-201ENSMUST00000002708 Ak7Q9D2H2 614 aa21.23■□□□□ 0.99
Shh-201ENSMUST00000002708 Gm156Q58A37 223 aa21.23■□□□□ 0.99
Shh-201ENSMUST00000002708 Skint5A7XUY5 1461 aa21.22■□□□□ 0.99
Shh-201ENSMUST00000002708 Stk26Q99JT2 416 aa21.22■□□□□ 0.99
Shh-201ENSMUST00000002708 P2rx7Q9Z1M0 595 aa21.22■□□□□ 0.99
Shh-201ENSMUST00000002708 Atp1b4Q99ME6 356 aa21.21■□□□□ 0.99
Shh-201ENSMUST00000002708 Mroh1E0CZ22 1640 aa21.21■□□□□ 0.99
Shh-201ENSMUST00000002708 MaddQ80U28 1577 aa21.21■□□□□ 0.99
Shh-201ENSMUST00000002708 Atxn3Q9CVD2 355 aa21.2■□□□□ 0.98
Shh-201ENSMUST00000002708 InsrP15208 1372 aa21.19■□□□□ 0.98
Shh-201ENSMUST00000002708 Yeats2Q3TUF7 1407 aa21.19■□□□□ 0.98
Shh-201ENSMUST00000002708 IbtkQ6ZPR6 1352 aaKnown RBP21.19■□□□□ 0.98
Shh-201ENSMUST00000002708 Scaf11E9PZM7 1456 aaKnown RBP21.18■□□□□ 0.98
Shh-201ENSMUST00000002708 Ralbp1Q62172 648 aa21.18■□□□□ 0.98
Shh-201ENSMUST00000002708 Zranb1Q7M760 708 aa21.18■□□□□ 0.98
Shh-201ENSMUST00000002708 Polr3glQ8R0C0 218 aa21.18■□□□□ 0.98
Shh-201ENSMUST00000002708 GsdmaQ9EST1 446 aa21.18■□□□□ 0.98
Shh-201ENSMUST00000002708 CenpjQ569L8 1344 aa21.18■□□□□ 0.98
Shh-201ENSMUST00000002708 Slc52a2Q9D8F3 450 aa21.18■□□□□ 0.98
Shh-201ENSMUST00000002708 Mre11Q61216 706 aa21.17■□□□□ 0.98
Shh-201ENSMUST00000002708 Hsp90ab1P11499 724 aaKnown RBP21.16■□□□□ 0.98
Shh-201ENSMUST00000002708 Trim26Q99PN3 545 aa21.16■□□□□ 0.98
Shh-201ENSMUST00000002708 Cald1E9QA15 768 aaKnown RBP21.15■□□□□ 0.98
Shh-201ENSMUST00000002708 Ppm1gQ61074 542 aa21.15■□□□□ 0.98
Shh-201ENSMUST00000002708 Rlbp1Q9Z275 317 aa21.15■□□□□ 0.98
Shh-201ENSMUST00000002708 Map4k4P97820 1233 aaKnown RBP21.15■□□□□ 0.98
Shh-201ENSMUST00000002708 Exosc9Q9JHI7 438 aaKnown RBP21.15■□□□□ 0.98
Shh-201ENSMUST00000002708 KdrP35918 1367 aa21.13■□□□□ 0.97
Shh-201ENSMUST00000002708 Ipo8Q7TMY7 1010 aa21.13■□□□□ 0.97
Shh-201ENSMUST00000002708 Shq1Q7TMX5 569 aa21.12■□□□□ 0.97
Shh-201ENSMUST00000002708 Eif2ak4Q9QZ05 1648 aa21.12■□□□□ 0.97
Shh-201ENSMUST00000002708 Mapk8ip3Q9ESN9 1337 aa21.12■□□□□ 0.97
Shh-201ENSMUST00000002708 Ccdc183A2AJB1 534 aa21.11■□□□□ 0.97
Shh-201ENSMUST00000002708 Apaf1O88879 1249 aa21.11■□□□□ 0.97
Shh-201ENSMUST00000002708 Amer1Q7TS75 1132 aa21.11■□□□□ 0.97
Shh-201ENSMUST00000002708 Kiaa0556Q8C753 1610 aa21.11■□□□□ 0.97
Shh-201ENSMUST00000002708 Adamts7Q68SA9 1657 aa21.11■□□□□ 0.97
Shh-201ENSMUST00000002708 Prrc2bQ7TPM1 1486 aaKnown RBP21.11■□□□□ 0.97
Shh-201ENSMUST00000002708 Gm6268A2A3U9 297 aa21.1■□□□□ 0.97
Shh-201ENSMUST00000002708 U2af1Q9D883 239 aaKnown RBP21.09■□□□□ 0.97
Shh-201ENSMUST00000002708 Ttc37F8VPK0 1563 aa21.09■□□□□ 0.97
Shh-201ENSMUST00000002708 Duxf3A0A0N4SV92 674 aa21.09■□□□□ 0.97
Shh-201ENSMUST00000002708 Iqsec2Q5DU25 1478 aa21.08■□□□□ 0.97
Shh-201ENSMUST00000002708 Tsen2Q6P7W5 460 aa21.08■□□□□ 0.96
Shh-201ENSMUST00000002708 KarsQ99MN1 595 aaKnown RBP21.07■□□□□ 0.96
Shh-201ENSMUST00000002708 Qser1A2BIE1 1698 aa21.06■□□□□ 0.96
Shh-201ENSMUST00000002708 Pnmal2G3X9N3 661 aa21.06■□□□□ 0.96
Shh-201ENSMUST00000002708 Ahdc1Q6PAL7 1594 aaKnown RBP21.06■□□□□ 0.96
Shh-201ENSMUST00000002708 Adgrl3Q80TS3 1537 aa21.06■□□□□ 0.96
Shh-201ENSMUST00000002708 Cep170bQ80U49 1574 aa21.05■□□□□ 0.96
Shh-201ENSMUST00000002708 Rangap1P46061 589 aaKnown RBP21.05■□□□□ 0.96
Shh-201ENSMUST00000002708 Nrxn1Q9CS84 1514 aa21.03■□□□□ 0.96
Shh-201ENSMUST00000002708 Ecm2Q5FW85 670 aa21.03■□□□□ 0.96
Shh-201ENSMUST00000002708 Ppp1r9bQ6R891 817 aaKnown RBP21.03■□□□□ 0.96
Shh-201ENSMUST00000002708 Q9D9H8 365 aa21.03■□□□□ 0.96
Shh-201ENSMUST00000002708 Ppp1r3fQ9JIG4 799 aa21.03■□□□□ 0.96
Shh-201ENSMUST00000002708 Arhgap23Q69ZH9 1483 aa21.02■□□□□ 0.96
Shh-201ENSMUST00000002708 Hfm1D3Z4R1 1434 aa21.02■□□□□ 0.96
Shh-201ENSMUST00000002708 Ksr2Q3UVC0 959 aa21.02■□□□□ 0.96
Retrieved 100 of 22,080 RNA–protein pairs in 8.7 ms