RNA–Protein interactions for RNA: YNL330C

RPD3, Transcript of Histone deacetylase, component of both the Rpd3S and Rpd3L complexes, yeastyeast

Gene RPD3, Length 1,302 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RPD3YNL330C YFR009W-AP0C5M9 85 aa6.05□□□□□ -1.44
RPD3YNL330C TOM6P33448 61 aa6.05□□□□□ -1.44
RPD3YNL330C YHL018WP38744 120 aaPredicted RBP6.05□□□□□ -1.44
RPD3YNL330C IGD1P43598 195 aa6.03□□□□□ -1.44
RPD3YNL330C EDC1P53080 175 aaPredicted RBP6.03□□□□□ -1.44
RPD3YNL330C YBR230W-AQ3E762 66 aa6.03□□□□□ -1.44
RPD3YNL330C YJL127C-BQ3E828 52 aa6.03□□□□□ -1.44
RPD3YNL330C ECM12O13529 151 aa6.01□□□□□ -1.45
RPD3YNL330C TDA2P40045 126 aa6.01□□□□□ -1.45
RPD3YNL330C RPL38P49167 78 aaKnown RBP6.01□□□□□ -1.45
RPD3YNL330C RRT15Q3E811 62 aa6.01□□□□□ -1.45
RPD3YNL330C Q0032Q9ZZX7 96 aa6.01□□□□□ -1.45
RPD3YNL330C YAR023CD6VPM8 179 aa6□□□□□ -1.45
RPD3YNL330C YLR156WP0CE96 114 aa6□□□□□ -1.45
RPD3YNL330C YLR159WP0CE97 114 aa6□□□□□ -1.45
RPD3YNL330C YLR161WP0CE98 114 aa6□□□□□ -1.45
RPD3YNL330C YLR122CQ12312 125 aa6□□□□□ -1.45
RPD3YNL330C YNL042W-BQ3E7Z2 85 aa6□□□□□ -1.45
RPD3YNL330C YLR307C-AQ3E825 87 aa6□□□□□ -1.45
RPD3YNL330C SNA2P56508 79 aa5.99□□□□□ -1.45
RPD3YNL330C BET1P22804 142 aa5.99□□□□□ -1.45
RPD3YNL330C YGL041C-BQ3E750 60 aa5.99□□□□□ -1.45
RPD3YNL330C YKL183C-AQ3E765 70 aa5.99□□□□□ -1.45
RPD3YNL330C ICS3P47034 131 aa5.98□□□□□ -1.45
RPD3YNL330C RSM18P40033 138 aa5.97□□□□□ -1.45
RPD3YNL330C YLR415CO13578 112 aa5.96□□□□□ -1.46
RPD3YNL330C YER187WP40102 141 aa5.96□□□□□ -1.46
RPD3YNL330C ATP20Q12233 115 aa5.96□□□□□ -1.46
RPD3YNL330C UTP20P35194 2493 aaKnown RBP5.95□□□□□ -1.46
RPD3YNL330C RPL11AP0C0W9 174 aaKnown RBP5.95□□□□□ -1.46
RPD3YNL330C RPL11BQ3E757 174 aaPredicted RBP5.95□□□□□ -1.46
RPD3YNL330C NUM1Q00402 2748 aa5.94□□□□□ -1.46
RPD3YNL330C COX23P38824 151 aa5.94□□□□□ -1.46
RPD3YNL330C EDC2P40023 145 aaPredicted RBP5.94□□□□□ -1.46
RPD3YNL330C YDR246W-AQ3E763 66 aa5.94□□□□□ -1.46
RPD3YNL330C YLR361C-AQ3E795 98 aa5.94□□□□□ -1.46
RPD3YNL330C AUA1P32450 94 aa5.93□□□□□ -1.46
RPD3YNL330C SPT4P32914 102 aaPredicted RBP5.92□□□□□ -1.46
RPD3YNL330C YHR213W-BQ8TGK1 99 aa5.92□□□□□ -1.46
RPD3YNL330C YRA2P36036 203 aaKnown RBP RIP-Chip data5.91□□□□□ -1.46not detected
RPD3YNL330C RPL36BO14455 100 aaKnown RBP5.89□□□□□ -1.47
RPD3YNL330C YOR314WQ12506 109 aa5.89□□□□□ -1.47
RPD3YNL330C AIM4P38305 123 aaPredicted RBP5.88□□□□□ -1.47
RPD3YNL330C YGL193CP53097 103 aa5.88□□□□□ -1.47
RPD3YNL330C DDR2P89113 61 aa5.88□□□□□ -1.47
RPD3YNL330C YOL014WQ08110 124 aa5.88□□□□□ -1.47
RPD3YNL330C YJL133C-AQ3E7A3 74 aa5.88□□□□□ -1.47
RPD3YNL330C YER039C-AP0CD97 72 aa5.87□□□□□ -1.47
RPD3YNL330C YCR050CP25630 102 aa5.87□□□□□ -1.47
RPD3YNL330C PEX22P39718 180 aa5.87□□□□□ -1.47
RPD3YNL330C YHR007C-AQ07074 71 aa5.85□□□□□ -1.47
RPD3YNL330C YOR072WQ08486 104 aa5.85□□□□□ -1.47
RPD3YNL330C TDA8Q6B2U8 126 aa5.85□□□□□ -1.47
RPD3YNL330C BSC4P53841 131 aa5.84□□□□□ -1.47
RPD3YNL330C ECM19Q06011 112 aa5.83□□□□□ -1.48
RPD3YNL330C NOP10Q6Q547 58 aaPredicted RBP5.83□□□□□ -1.48
RPD3YNL330C GIS2P53849 153 aaKnown RBP RIP-Chip data5.81□□□□□ -1.48 RIP-Chip
RPD3YNL330C YDR182W-AQ3E796 67 aa5.8□□□□□ -1.48
RPD3YNL330C HOT13P36078 116 aa5.79□□□□□ -1.48
RPD3YNL330C YLR162WQ06235 118 aa5.79□□□□□ -1.48
RPD3YNL330C YBR182C-AQ8TGU6 64 aa5.79□□□□□ -1.48
RPD3YNL330C YEL045CP32616 141 aa5.78□□□□□ -1.48
RPD3YNL330C YDR034C-AP0C289 58 aa5.77□□□□□ -1.49
RPD3YNL330C MIC10Q96VH5 97 aa5.77□□□□□ -1.49
RPD3YNL330C RPL36AP05745 100 aaPredicted RBP5.76□□□□□ -1.49
RPD3YNL330C SBH1P52870 82 aa5.76□□□□□ -1.49
RPD3YNL330C YOL166W-AQ8TGJ1 51 aa5.76□□□□□ -1.49
RPD3YNL330C YGR121W-AQ3E816 71 aa5.74□□□□□ -1.49
RPD3YNL330C YPR195CQ06594 109 aa5.72□□□□□ -1.49
RPD3YNL330C YIL102CP40488 101 aa5.71□□□□□ -1.5
RPD3YNL330C LIP1Q03579 150 aa5.71□□□□□ -1.5
RPD3YNL330C YJL197C-AP0C5P0 93 aa5.7□□□□□ -1.5
RPD3YNL330C YHL005CP38752 130 aa5.68□□□□□ -1.5
RPD3YNL330C SPG1P50088 95 aa5.68□□□□□ -1.5
RPD3YNL330C KTI11Q3E840 82 aa5.68□□□□□ -1.5
RPD3YNL330C YOL013W-AP0C272 63 aaPredicted RBP5.67□□□□□ -1.5
RPD3YNL330C YAR064WP39563 99 aa5.67□□□□□ -1.5
RPD3YNL330C YMR230W-AQ3E7B5 62 aa5.67□□□□□ -1.5
RPD3YNL330C KSH1Q8TGJ3 72 aa5.65□□□□□ -1.51
RPD3YNL330C DYN1P36022 4092 aa5.63□□□□□ -1.51
RPD3YNL330C RPS30AP0CX33 63 aaKnown RBP5.63□□□□□ -1.51
RPD3YNL330C RPS30BP0CX34 63 aaKnown RBP5.63□□□□□ -1.51
RPD3YNL330C YLR157W-DP0CE99 70 aa5.62□□□□□ -1.51
RPD3YNL330C YCR043CP25361 127 aa5.62□□□□□ -1.51
RPD3YNL330C YBR027CP38220 110 aa5.62□□□□□ -1.51
RPD3YNL330C YJR085CP47131 105 aaKnown RBP5.62□□□□□ -1.51
RPD3YNL330C YGR164WP53291 111 aa5.61□□□□□ -1.51
RPD3YNL330C YOL097W-AQ3E7Y9 61 aa5.61□□□□□ -1.51
RPD3YNL330C YLR412C-AQ3E742 68 aa5.59□□□□□ -1.51
RPD3YNL330C YBR121C-AP0C5L4 52 aa5.58□□□□□ -1.52
RPD3YNL330C LCL1Q02786 101 aa5.58□□□□□ -1.52
RPD3YNL330C RPS28BP0C0X0 67 aaKnown RBP5.56□□□□□ -1.52
RPD3YNL330C RPS28AQ3E7X9 67 aaPredicted RBP5.56□□□□□ -1.52
RPD3YNL330C YPR153WQ06537 140 aa5.55□□□□□ -1.52
RPD3YNL330C LCL2Q08045 131 aa5.54□□□□□ -1.52
RPD3YNL330C YHR125WP38831 101 aa5.53□□□□□ -1.52
RPD3YNL330C YOR381W-AQ3E804 55 aa5.53□□□□□ -1.52
RPD3YNL330C YKL065W-AQ2V2P2 73 aa5.52□□□□□ -1.53
RPD3YNL330C SDH6Q3E785 79 aa5.51□□□□□ -1.53
RPD3YNL330C YOR268CQ08734 132 aa5.5□□□□□ -1.53
Retrieved 100 of 5,963 RNA–protein pairs in 55.5 ms